Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05466 and RBAM_032980

See Amino acid alignment / Visit BSNT_05466 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05466___ywtE.1.9828.seq
#    -bsequence dna-align/RBAM_032980___ywtE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05466___ywtE-RBAM_032980___ywtE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05466___ywtE-RBAM_032980___ywtE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05466___ywtE
# 2: RBAM_032980___ywtE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 872
# Identity:     649/872 (74.4%)
# Similarity:   649/872 (74.4%)
# Gaps:          25/872 ( 2.9%)
# Score: 2326.5
# 
#
#=======================================

BSNT_05466___      1 ATGAAATGTATTGCGATTGATCTAGACGGAACATTACTGAATAAAGAAAG     50
                     |||||||..||.||.|||||..|||||||.|||||||||||....||.||
RBAM_032980__      1 ATGAAATTGATAGCCATTGACTTAGACGGCACATTACTGAACTCGGACAG     50

BSNT_05466___     51 CGTCATTTCTGCGGAAAACAGAGAGGCGAT-CAAGCGGGCCGTTGATGCC     99
                     .||.||||||.||||||||||||.|||..| ||| .|.||.|.|||.||.
RBAM_032980__     51 TGTGATTTCTCCGGAAAACAGAGCGGCTTTACAA-AGAGCGGATGAAGCG     99

BSNT_05466___    100 GGCATCCTCGTCACCATTTGCACGGGAAGAGCGACATTTGATGTAAAGGC    149
                     |||||.|||||..||||.||||||||.|||||.||.|||||||||||.||
RBAM_032980__    100 GGCATTCTCGTGGCCATCTGCACGGGCAGAGCCACGTTTGATGTAAAAGC    149

BSNT_05466___    150 GCTGCTGGATGACTTGGACATCCCTATCATTGCAGCTAATGGCGGTACGA    199
                     |||..||.|.||.|||||.||.||.||||||||.||.||.|||||.||..
RBAM_032980__    150 GCTCTTGAAGGATTTGGATATTCCGATCATTGCGGCAAACGGCGGGACAG    199

BSNT_05466___    200 TCCATGACACGGGTTACCGTTTGATAAGCCGGACATTAATGGATCAGGAA    249
                     |||||||||..||.|||||..|..|.||||||...||||||||||||.|.
RBAM_032980__    200 TCCATGACAAAGGATACCGCCTCGTCAGCCGGCTCTTAATGGATCAGCAG    249

BSNT_05466___    250 GCCGGCAAAGCGATTGCTGATTACTT-ACTGTCAAAAAACATTTACTTTG    298
                     |||||.||.|..||.||.|.|||.|| ||.|.| |||.||||||||||||
RBAM_032980__    250 GCCGGGAAGGATATAGCCGCTTATTTAACGGAC-AAAGACATTTACTTTG    298

BSNT_05466___    299 AGGTATATACAGATGACCATCTGCTTTCTCCTTTTGACGGCAAAGCTAAG    348
                     ||||.|||||||||||.||||||||.||.||.|||||||||.|..|.||.
RBAM_032980__    299 AGGTCTATACAGATGATCATCTGCTGTCCCCATTTGACGGCGAGTCCAAA    348

BSNT_05466___    349 CTGCACGCGGAGCTAGACATTCTAAAGAGCGCAAATCCAAACGAGCAGAC    398
                     |||||.||.||.||.||.|||||.||.|||||.|||||.||.||  |||.
RBAM_032980__    349 CTGCAGGCAGAACTGGATATTCTGAAAAGCGCCAATCCTAAGGA--AGAT    396

BSNT_05466___    399 A--GATGAACTGTGGCAAGGAGCCATGACTCAATTCAAGCAATTTGGAAT    446
                     |  .||..|.|.|||.|.||.||.|.|||.||.|||||.|||||.||.||
RBAM_032980__    397 ATTCATACATTATGGGAGGGCGCAAAGACGCAGTTCAAACAATTCGGCAT    446

BSNT_05466___    447 TAAACCAATCCCTCATAT-----CGAATCTGTTTTTGAGGGCGGTGAAAA    491
                     ||||||..|.|...||||     |||     |||||.|.||.|..|||.|
RBAM_032980__    447 TAAACCCGTACAGGATATACAGGCGA-----TTTTTAACGGAGACGAACA    491

BSNT_05466___    492 TATTTATAAGCTTCTATGCTTCTCCTTTGATATGGACAAGCTGAAACAAG    541
                     |.||||.||||||||.||.|||||.|||||||||||.||.||||.|.|.|
RBAM_032980__    492 TGTTTACAAGCTTCTTTGTTTCTCTTTTGATATGGAAAAACTGAGAAACG    541

BSNT_05466___    542 CGAAGGAAGAGCTGAAGCATCATAAAAAACTGGCGCAAACCTCTTCCGGA    591
                     |.||.|||||..|.|..||||||...|||.|..|.||.||.|||||||||
RBAM_032980__    542 CCAAAGAAGAAATTACACATCATCCGAAATTATCCCAGACATCTTCCGGA    591

BSNT_05466___    592 AAACATATTATTGAAATCCTGCCGGCCTCTTCAGGAAAAGGACGCGCGTT    641
                     |||||.|||||.||||||||.||.|||..|||.|||||.|||||.||..|
RBAM_032980__    592 AAACACATTATCGAAATCCTCCCTGCCGGTTCTGGAAAGGGACGTGCTCT    641

BSNT_05466___    642 AACAAAGC-TGGCTGACATATACGGAATTGAAACACAGGATATCTATGCG    690
                     .||..||| ||.||.|| |.|||||||||||||.|||||||||.||.||.
RBAM_032980__    642 GACGGAGCTTGCCTCAC-TGTACGGAATTGAAAAACAGGATATTTACGCC    690

BSNT_05466___    691 ATCGGCGACAGTCCGAACGATTTGTCCATGTTTGAAGTCTCAGGACACCG    740
                     |||||||||||.|||||.|||||.|||||||||||||...|.|||.||||
RBAM_032980__    691 ATCGGCGACAGCCCGAATGATTTCTCCATGTTTGAAGCGGCGGGAAACCG    740

BSNT_05466___    741 TATCGCCATGGAAAATGCGATTGATGAATTAAAAGAAAAAAGCACCTTTG    790
                     .||||||||||..|||||||||||||||.|.||.|||||||||||.|.|.
RBAM_032980__    741 CATCGCCATGGGCAATGCGATTGATGAACTGAAGGAAAAAAGCACGTATA    790

BSNT_05466___    791 TCACAAAAAGCAATGACGAAAATGGTGTGGCCTACTTTATAGACCAGCTT    840
                     |.|||||||||||.||.|||||.||.||.||.||.||.||..|||.||||
RBAM_032980__    791 TTACAAAAAGCAACGATGAAAACGGCGTCGCATATTTCATCAACCGGCTT    840

BSNT_05466___    841 CTTTCAGGACAA-TATGCATAA    861
                     ||    .||||| .||..||||
RBAM_032980__    841 CT----CGACAACGATCAATAA    858


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05466 and RBAM_032980

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
