Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05465 and RBAM_032970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence dna-align/BSNT_05465___ywtF.1.9828.seq
# -bsequence dna-align/RBAM_032970___ywtF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05465___ywtF-RBAM_032970___ywtF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05465___ywtF-RBAM_032970___ywtF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05465___ywtF
# 2: RBAM_032970___ywtF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity: 717/1031 (69.5%)
# Similarity: 717/1031 (69.5%)
# Gaps: 88/1031 ( 8.5%)
# Score: 2401.5
#
#
#=======================================
BSNT_05465___ 1 ATGGAGGAACGATTACAACACAAGAAGAAA-AAGAGACGTCTGAAAAAAT 49
|||||.|||||||..||||.| ||||.||| ||.|||||.||.|.|||||
RBAM_032970__ 1 ATGGAAGAACGATCTCAACGC-AGAAAAAAGAAAAGACGCCTCAGAAAAT 49
BSNT_05465___ 50 GGGTGAAATTCACAATCGGTTTGT-------TT----GCTATTCTAATT- 87
|||||||| ||||| || ||| ||||.|||
RBAM_032970__ 50 GGGTGAAA-----------TTTGTACTGGTATTCGCCGCT-TTCTTATTG 87
BSNT_05465___ 88 ---ATCGTAACTGGTTCAATTGGTACCTATGCTTATATAAAGTTGAACAA 134
|||| |.|||||..|.||.|||||.||.|.|.|.||.|||||.||
RBAM_032970__ 88 GTGATCG---CCGGTTCCGTCGGCACCTACGCATTTGTGAAATTGAATAA 134
BSNT_05465___ 135 TGCGTCAAAACAAGCACATATTGATCTAAATGAAAATGG---TCAATCCG 181
||||.|.|||.||||.||..|....|| |||....|| .||.||||
RBAM_032970__ 135 TGCGACCAAAGAAGCGCACGTCAGCCT---TGACCGCGGCGACCAGTCCG 181
BSNT_05465___ 182 TTAAACGTATCAAAGAATTTGATCCGAAAAAAGACTCATTTACTGTATTA 231
|.|||||.||||||||||||||.|||||.||.||.||.||.||.|||||.
RBAM_032970__ 182 TAAAACGGATCAAAGAATTTGACCCGAAGAAGGATTCTTTCACCGTATTG 231
BSNT_05465___ 232 CTTTTAGGAATTGATTCAAGA----------AATTCCAAAGGTGAGACGG 271
||||||||||| ||| ||| ||.||.||..|.|
RBAM_032970__ 232 CTTTTAGGAAT-------AGACGCCCGTGACAAT---AAGGGCGAATCAG 271
BSNT_05465___ 272 TTGACGATGCTCGAAGTGACGCTAATGTCTTAGTTACCTTTAATCGAAAA 321
|.||.||.||..||||||||||.||.||..|.||.|||||.||.||.|||
RBAM_032970__ 272 TAGATGACGCAAGAAGTGACGCCAACGTGCTCGTCACCTTCAACCGGAAA 321
BSNT_05465___ 322 AACAAATCAGCAACAATGTTAAGTATACCGAGAGATTCTTATGTTAACAT 371
||.|||.||||.||.|||.|.||.||.|||.|.|||||.|||||.|||||
RBAM_032970__ 322 AAGAAAACAGCGACGATGCTCAGCATTCCGCGGGATTCCTATGTCAACAT 371
BSNT_05465___ 372 CCCTGGTTATGGATATGATAAATTTACACATGCCCATGCATATGGAGG-- 419
|||.||..|.||.|||||.|||||..|.||.||.|||||.||.||.||
RBAM_032970__ 372 CCCGGGACACGGCTATGACAAATTCGCGCACGCACATGCTTACGGCGGTT 421
BSNT_05465___ 420 AGTAA---AAC-TCTCGGCGAAAACAATTGAAAACCTTCTAGATATTCCA 465
| ||| ||| |.| ||||||.|.||||||.|.||.||||||||.
RBAM_032970__ 422 A-TAATTTAACTTAT-----AAAACAGTAGAAAACATGCTTGATATTCCG 465
BSNT_05465___ 466 GTAGATTATGTAATAGAAAGTAATTTTGACGCTTTTAAAGATGTTGTGGA 515
|||||||||||..|.||.||.||.||.|||||.||....|||||.||..|
RBAM_032970__ 466 GTAGATTATGTGGTTGAGAGCAACTTCGACGCGTTCCGCGATGTCGTCAA 515
BSNT_05465___ 516 TGAATTAAATGGAGTTAGTATAAATGTAAAAAATGAAAAAATAGTTAATC 565
|||.||.||.||.||||...|||||||.||||...|.|||||.|...|||
RBAM_032970__ 516 TGAGTTGAACGGCGTTACGGTAAATGTGAAAAGCCAGAAAATTGCCGATC 565
BSNT_05465___ 566 AAATTAAAAAAGATACAAAAGGAAAAGTCACATTAAAAACTGGCGTTCAA 615
..||||||...||||||||||||||||||....|.||..|.|||||.||.
RBAM_032970__ 566 GTATTAAAGTCGATACAAAAGGAAAAGTCGTGCTGAAGCCGGGCGTCCAG 615
BSNT_05465___ 616 ACACTAAACGGTGAAGAAGCACTAGCTTATGTAAGGACACGTAAAGCTGA 665
||.||..|||||||..|.|||||.|||||||||||.|||||.|||||.||
RBAM_032970__ 616 ACGCTTGACGGTGAGCAGGCACTGGCTTATGTAAGAACACGCAAAGCGGA 665
BSNT_05465___ 666 TACCGATTTTCAACGCGGTCAAAGACAGATGGAAGTCCTAAATGCCATCA 715
.||||||.|....|||||.|||||||||||||||||.||.|..|||||.|
RBAM_032970__ 666 CACCGATCTGATGCGCGGACAAAGACAGATGGAAGTGCTGAGCGCCATTA 715
BSNT_05465___ 716 TAAAAAAATCTAAATCATTAAGCTCAATACCAGCATATGATGATATCGTT 765
|.||||||||||||||.||||||||.||.|||.|.|||||.||||||||.
RBAM_032970__ 716 TTAAAAAATCTAAATCGTTAAGCTCGATCCCATCTTATGACGATATCGTC 765
BSNT_05465___ 766 GATAGTTTAGGGGAAAATTTAAAGATGAATTTATCTTTAAATGATGCAAT 815
||.||.||||||.||||.|||||.|||||.||||||.|.|||||.||.||
RBAM_032970__ 766 GACAGCTTAGGGAAAAACTTAAAAATGAACTTATCTCTTAATGACGCCAT 815
BSNT_05465___ 816 CGGTTTATTTCCTTTTATAACTTCTTTAAAATCAGTTGATACTGAACAAC 865
||||.|.|||||.|||||.||.||..|.|||||.||.|||.||...||.|
RBAM_032970__ 816 CGGTCTGTTTCCGTTTATCACATCGCTGAAATCGGTGGATTCTTTGCAGC 865
BSNT_05465___ 866 TTACCGGTTCTGACATGTATCTCTACAGCTCTCGTGAG--CG--AAAAAA 911
|.||.|||||.||||..|||.|.|||| |||.|.|| || |||||.
RBAM_032970__ 866 TGACAGGTTCAGACAGCTATATTTACA---CTCCTCAGTACGGCAAAAAT 912
BSNT_05465___ 912 ACTATATTATTTGAAACTTGAT-AGTGAAAAGCTAGAAGAAGTCAAAACC 960
| |.|||||.||.||.||..|| || |||||.||..|||||||.|||||.
RBAM_032970__ 913 A-TTTATTACTTCAAGCTGAATGAG-GAAAACCTTCAAGAAGTAAAAACA 960
BSNT_05465___ 961 GAACTAAAAAATGACATAGA----TAACTGA 987
.||.||||||||||..|||| |||
RBAM_032970__ 961 AAATTAAAAAATGATTTAGACGCGTAA---- 987
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