Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05465 and RBAM_032970

See Amino acid alignment / Visit BSNT_05465 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05465___ywtF.1.9828.seq
#    -bsequence dna-align/RBAM_032970___ywtF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05465___ywtF-RBAM_032970___ywtF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05465___ywtF-RBAM_032970___ywtF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05465___ywtF
# 2: RBAM_032970___ywtF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity:     717/1031 (69.5%)
# Similarity:   717/1031 (69.5%)
# Gaps:          88/1031 ( 8.5%)
# Score: 2401.5
# 
#
#=======================================

BSNT_05465___      1 ATGGAGGAACGATTACAACACAAGAAGAAA-AAGAGACGTCTGAAAAAAT     49
                     |||||.|||||||..||||.| ||||.||| ||.|||||.||.|.|||||
RBAM_032970__      1 ATGGAAGAACGATCTCAACGC-AGAAAAAAGAAAAGACGCCTCAGAAAAT     49

BSNT_05465___     50 GGGTGAAATTCACAATCGGTTTGT-------TT----GCTATTCTAATT-     87
                     ||||||||           |||||       ||    ||| ||||.||| 
RBAM_032970__     50 GGGTGAAA-----------TTTGTACTGGTATTCGCCGCT-TTCTTATTG     87

BSNT_05465___     88 ---ATCGTAACTGGTTCAATTGGTACCTATGCTTATATAAAGTTGAACAA    134
                        ||||   |.|||||..|.||.|||||.||.|.|.|.||.|||||.||
RBAM_032970__     88 GTGATCG---CCGGTTCCGTCGGCACCTACGCATTTGTGAAATTGAATAA    134

BSNT_05465___    135 TGCGTCAAAACAAGCACATATTGATCTAAATGAAAATGG---TCAATCCG    181
                     ||||.|.|||.||||.||..|....||   |||....||   .||.||||
RBAM_032970__    135 TGCGACCAAAGAAGCGCACGTCAGCCT---TGACCGCGGCGACCAGTCCG    181

BSNT_05465___    182 TTAAACGTATCAAAGAATTTGATCCGAAAAAAGACTCATTTACTGTATTA    231
                     |.|||||.||||||||||||||.|||||.||.||.||.||.||.|||||.
RBAM_032970__    182 TAAAACGGATCAAAGAATTTGACCCGAAGAAGGATTCTTTCACCGTATTG    231

BSNT_05465___    232 CTTTTAGGAATTGATTCAAGA----------AATTCCAAAGGTGAGACGG    271
                     |||||||||||       |||          |||   ||.||.||..|.|
RBAM_032970__    232 CTTTTAGGAAT-------AGACGCCCGTGACAAT---AAGGGCGAATCAG    271

BSNT_05465___    272 TTGACGATGCTCGAAGTGACGCTAATGTCTTAGTTACCTTTAATCGAAAA    321
                     |.||.||.||..||||||||||.||.||..|.||.|||||.||.||.|||
RBAM_032970__    272 TAGATGACGCAAGAAGTGACGCCAACGTGCTCGTCACCTTCAACCGGAAA    321

BSNT_05465___    322 AACAAATCAGCAACAATGTTAAGTATACCGAGAGATTCTTATGTTAACAT    371
                     ||.|||.||||.||.|||.|.||.||.|||.|.|||||.|||||.|||||
RBAM_032970__    322 AAGAAAACAGCGACGATGCTCAGCATTCCGCGGGATTCCTATGTCAACAT    371

BSNT_05465___    372 CCCTGGTTATGGATATGATAAATTTACACATGCCCATGCATATGGAGG--    419
                     |||.||..|.||.|||||.|||||..|.||.||.|||||.||.||.||  
RBAM_032970__    372 CCCGGGACACGGCTATGACAAATTCGCGCACGCACATGCTTACGGCGGTT    421

BSNT_05465___    420 AGTAA---AAC-TCTCGGCGAAAACAATTGAAAACCTTCTAGATATTCCA    465
                     | |||   ||| |.|     ||||||.|.||||||.|.||.||||||||.
RBAM_032970__    422 A-TAATTTAACTTAT-----AAAACAGTAGAAAACATGCTTGATATTCCG    465

BSNT_05465___    466 GTAGATTATGTAATAGAAAGTAATTTTGACGCTTTTAAAGATGTTGTGGA    515
                     |||||||||||..|.||.||.||.||.|||||.||....|||||.||..|
RBAM_032970__    466 GTAGATTATGTGGTTGAGAGCAACTTCGACGCGTTCCGCGATGTCGTCAA    515

BSNT_05465___    516 TGAATTAAATGGAGTTAGTATAAATGTAAAAAATGAAAAAATAGTTAATC    565
                     |||.||.||.||.||||...|||||||.||||...|.|||||.|...|||
RBAM_032970__    516 TGAGTTGAACGGCGTTACGGTAAATGTGAAAAGCCAGAAAATTGCCGATC    565

BSNT_05465___    566 AAATTAAAAAAGATACAAAAGGAAAAGTCACATTAAAAACTGGCGTTCAA    615
                     ..||||||...||||||||||||||||||....|.||..|.|||||.||.
RBAM_032970__    566 GTATTAAAGTCGATACAAAAGGAAAAGTCGTGCTGAAGCCGGGCGTCCAG    615

BSNT_05465___    616 ACACTAAACGGTGAAGAAGCACTAGCTTATGTAAGGACACGTAAAGCTGA    665
                     ||.||..|||||||..|.|||||.|||||||||||.|||||.|||||.||
RBAM_032970__    616 ACGCTTGACGGTGAGCAGGCACTGGCTTATGTAAGAACACGCAAAGCGGA    665

BSNT_05465___    666 TACCGATTTTCAACGCGGTCAAAGACAGATGGAAGTCCTAAATGCCATCA    715
                     .||||||.|....|||||.|||||||||||||||||.||.|..|||||.|
RBAM_032970__    666 CACCGATCTGATGCGCGGACAAAGACAGATGGAAGTGCTGAGCGCCATTA    715

BSNT_05465___    716 TAAAAAAATCTAAATCATTAAGCTCAATACCAGCATATGATGATATCGTT    765
                     |.||||||||||||||.||||||||.||.|||.|.|||||.||||||||.
RBAM_032970__    716 TTAAAAAATCTAAATCGTTAAGCTCGATCCCATCTTATGACGATATCGTC    765

BSNT_05465___    766 GATAGTTTAGGGGAAAATTTAAAGATGAATTTATCTTTAAATGATGCAAT    815
                     ||.||.||||||.||||.|||||.|||||.||||||.|.|||||.||.||
RBAM_032970__    766 GACAGCTTAGGGAAAAACTTAAAAATGAACTTATCTCTTAATGACGCCAT    815

BSNT_05465___    816 CGGTTTATTTCCTTTTATAACTTCTTTAAAATCAGTTGATACTGAACAAC    865
                     ||||.|.|||||.|||||.||.||..|.|||||.||.|||.||...||.|
RBAM_032970__    816 CGGTCTGTTTCCGTTTATCACATCGCTGAAATCGGTGGATTCTTTGCAGC    865

BSNT_05465___    866 TTACCGGTTCTGACATGTATCTCTACAGCTCTCGTGAG--CG--AAAAAA    911
                     |.||.|||||.||||..|||.|.||||   |||.|.||  ||  |||||.
RBAM_032970__    866 TGACAGGTTCAGACAGCTATATTTACA---CTCCTCAGTACGGCAAAAAT    912

BSNT_05465___    912 ACTATATTATTTGAAACTTGAT-AGTGAAAAGCTAGAAGAAGTCAAAACC    960
                     | |.|||||.||.||.||..|| || |||||.||..|||||||.|||||.
RBAM_032970__    913 A-TTTATTACTTCAAGCTGAATGAG-GAAAACCTTCAAGAAGTAAAAACA    960

BSNT_05465___    961 GAACTAAAAAATGACATAGA----TAACTGA    987
                     .||.||||||||||..||||    |||    
RBAM_032970__    961 AAATTAAAAAATGATTTAGACGCGTAA----    987


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