Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05464 and RBAM_032960

See Amino acid alignment / Visit BSNT_05464 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05464.1.9828.seq
#    -bsequence dna-align/RBAM_032960___ywtG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05464-RBAM_032960___ywtG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05464-RBAM_032960___ywtG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05464
# 2: RBAM_032960___ywtG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1383
# Identity:     956/1383 (69.1%)
# Similarity:   956/1383 (69.1%)
# Gaps:         177/1383 (12.8%)
# Score: 3621.0
# 
#
#=======================================

BSNT_05464         1 ATGAAAAAG----CAGTCAAATATATGGCTTTATTTTTTCGGAGCTCTTG     46
                     ||| |||||    ||.||.||||.||||||.|||||||||||.||.||.|
RBAM_032960__      1 ATG-AAAAGCATACACTCGAATAAATGGCTCTATTTTTTCGGCGCACTCG     49

BSNT_05464        47 GAGGCGCGTTATATGGCTATGATACCGGAGTGATTTCCGGAGCTATTTTA     96
                     |.|||||||||||.||.||||||||||||||.||||||||||||||||||
RBAM_032960__     50 GCGGCGCGTTATACGGATATGATACCGGAGTCATTTCCGGAGCTATTTTA     99

BSNT_05464        97 TTTATGAAAAAGGAGTTAGGATTGAATGCGTTTACAGAAGGTCTTGTTGT    146
                     |||||||||||.||..|.|||.||||.||.|||||||||||.||.||.||
RBAM_032960__    100 TTTATGAAAAAAGAACTGGGACTGAACGCCTTTACAGAAGGCCTCGTCGT    149

BSNT_05464       147 CAGCTCCTTACTGGTTGGGGCGATACTAGGCTCGGGAGCGGCCGGCAAGC    196
                     |||.||.|||.|||..||||||||.||.||.||||||...||||||||.|
RBAM_032960__    150 CAGTTCGTTATTGGCGGGGGCGATTCTCGGATCGGGATTCGCCGGCAAAC    199

BSNT_05464       197 TGACTGACCGTTTCGGAAGAAAAAAAGCAATTATGACGGCCGCGCTGTTG    246
                     ||||.|||||.|||||.||....||.||.||.|||...||.||||||.||
RBAM_032960__    200 TGACCGACCGGTTCGGCAGGCGGAAGGCCATCATGGGAGCGGCGCTGCTG    249

BSNT_05464       247 TTTTGTATAGGCGGTCTTGGTGTGGCACTGGCCCCAAATACGGGAGTCAT    296
                     |||||||||||||||.|.||.||.||..|.|||||.|||||.|..||.||
RBAM_032960__    250 TTTTGTATAGGCGGTTTAGGAGTCGCTTTTGCCCCGAATACAGAGGTGAT    299

BSNT_05464       297 GGTGCTGTTTCGCATCATTTTGGGACTTGCAGTCGGAACATCGACGACGA    346
                     |||.||.||.||.||||||.|.|||||.||.|||||||||||.||.||||
RBAM_032960__    300 GGTTCTTTTCCGGATCATTCTCGGACTGGCTGTCGGAACATCTACAACGA    349

BSNT_05464       347 TCGTGCCGCTTTATTTATCTGAACTGGCGCCAAAGCATAAGCGCGGGGCG    396
                     ||||.|||||.||||||||.||.|||||.||.||||||||.||.||||||
RBAM_032960__    350 TCGTTCCGCTCTATTTATCGGAGCTGGCTCCGAAGCATAAACGGGGGGCG    399

BSNT_05464       397 CTGTCATCACTGAATCAGCTGATGATCACGGTCGGCATCCTTCTTTCTTA    446
                     ||.||.||.|||||||||||||||||.||||||||.|||||..|||||||
RBAM_032960__    400 CTTTCTTCGCTGAATCAGCTGATGATTACGGTCGGAATCCTCGTTTCTTA    449

BSNT_05464       447 CATTGTCAATTACATATTTGCCGATGCCGAAGCGTGGCGCTGGATGCTTG    496
                     .||.||.||.||.||||||||||||||.|..||.||||||||||||||||
RBAM_032960__    450 TATCGTGAACTATATATTTGCCGATGCAGGCGCTTGGCGCTGGATGCTTG    499

BSNT_05464       497 GATTGGCTGCTGTGCCGTCATTGCTCTTGCTCATTGGCATTTTGTTTATG    546
                     ||.|.||.|.||||||||||.|..|..||||.||.||.||..|.||||||
RBAM_032960__    500 GACTTGCGGTTGTGCCGTCAGTCATTCTGCTGATCGGAATCCTATTTATG    549

BSNT_05464       547 CCGGAGAGCCCGCGCTGGCTGTTCACGAATGGCGAAGAA-AGCAAAGCGA    595
                     |||||.|||||||||||||||||.||||..|||.||||| || ||||| |
RBAM_032960__    550 CCGGAAAGCCCGCGCTGGCTGTTTACGATCGGCAAAGAAGAG-AAAGC-A    597

BSNT_05464       596 AGA-ACATTCTTGAAAAGTTGCGTGGCACAACAG-ATATTGATCAGGAAA    643
                     ||| |.||.|||..|...|||||.||.||.| || ||||||||.|.||.|
RBAM_032960__    598 AGAGAAATCCTTTCATCATTGCGGGGAACGA-AGAATATTGATGATGAGA    646

BSNT_05464       644 TACATGATATAAAAGAAGCGGAAAAGCAGGATGAAGGCGGCCTGAAGGAG    693
                     |..||.|.||.|||||||||||||||.|..|.|||||||||.||||.||.
RBAM_032960__    647 TTGATCAGATGAAAGAAGCGGAAAAGGAAAACGAAGGCGGCTTGAAAGAA    696

BSNT_05464       694 CTGTTCGATCCATGGGTGCGCCCAGCCCTGATTGCCGGTTTGGGATTGGC    743
                     .||||.||.||.||||||.|.||.||.|||||||||||..|.|||.|.||
RBAM_032960__    697 TTGTTTGAGCCGTGGGTGAGACCCGCGCTGATTGCCGGCCTCGGACTTGC    746

BSNT_05464       744 ATTTTTGCAGCAATTTATCGGAACGAATACGATCATCTACTATGCGCCAA    793
                     .||||||||||||||.|||||.||.|||||.||.||.||.||.||.||.|
RBAM_032960__    747 CTTTTTGCAGCAATTCATCGGGACAAATACAATTATTTATTACGCCCCGA    796

BSNT_05464       794 AAACCTTTACAAACGTCGGATTCGGAAACTCCGCTTCAATTTTAGGAACG    843
                     ||||.|||||.|..|||||.|||||.||.|||||.||.||.||.||||||
RBAM_032960__    797 AAACATTTACCAGTGTCGGGTTCGGCAATTCCGCGTCTATATTGGGAACG    846

BSNT_05464       844 GTCGGAATCGGCACAGTCAATGTTGTCATGACATTAGTAGCGATTAAAAT    893
                     ||||||||||||.|.||||||||..|||||||..|.|..||.||||||.|
RBAM_032960__    847 GTCGGAATCGGCGCTGTCAATGTCATCATGACGCTTGCGGCTATTAAAGT    896

BSNT_05464       894 CATCGACAAGATTGGAAGAAAGCCGTTACTGCTATTCGGGAATGCGGGAA    943
                     |||.||.|||||.||..|.||||||.|.|||||...|||.||||||||.|
RBAM_032960__    897 CATTGATAAGATCGGCCGGAAGCCGCTGCTGCTGGCCGGTAATGCGGGCA    946

BSNT_05464       944 TGGTGATCAGCTTGATCGTTCTCGCTTTAGTAAATCTCTTTTTCGATAAC    993
                     ||||.|||||..||.||||..|.||....||.|||||.||.||.|  |||
RBAM_032960__    947 TGGTCATCAGTCTGCTCGTATTGGCCGCGGTCAATCTTTTCTTTG--AAC    994

BSNT_05464       994 ACTC--CGGCTGCCTCATGGACGACCGTCATTTGTTTAGGCGTGTTTATC   1041
                     |.||  |.||.||.||||||||.||.||.||||||||||||.||||||||
RBAM_032960__    995 ATTCAGCAGCCGCATCATGGACAACGGTGATTTGTTTAGGCCTGTTTATC   1044

BSNT_05464      1042 GTTGTCTTTGCGGTCAGCTGGGGACCGGTTGTGTGGGTGATGCTTCCTGA   1091
                     .||||.|||||||||||||||||.||.|..||||||||.|||||||||||
RBAM_032960__   1045 ATTGTGTTTGCGGTCAGCTGGGGGCCTGCCGTGTGGGTCATGCTTCCTGA   1094

BSNT_05464      1092 ATTGTTCCTGCTTCATGTCAGAGGAATCGGGACCGGTGTTTCGAC-----   1136
                     |||.||||.|||.||||||.|.||.||||||||.|||||.||.||     
RBAM_032960__   1095 ATTATTCCCGCTGCATGTCCGGGGTATCGGGACGGGTGTCTCCACTTTAA   1144

BSNT_05464      1137 ---------------------------CA---------GCGATG------   1144
                                                ||         .|||||      
RBAM_032960__   1145 TGCTGCATGCCGGAACATTGATTGTCTCATTAACCTATCCGATGTTAATG   1194

BSNT_05464      1145 ---------GGAATCAGTTATTTATTCCTGATTTATGCCGCGATCGGTAT   1185
                              ||.|||||.||||||||.||.|||||||||||||||||.||
RBAM_032960__   1195 GAAGCAGTCGGCATCAGCTATTTATTTCTCATTTATGCCGCGATCGGGAT   1244

BSNT_05464      1186 CATGGCGTTCTTATTTGTCCGATTTAA-----------------------   1212
                     ..||||.|||.|.||.|||||.|||||                       
RBAM_032960__   1245 ACTGGCATTCCTGTTCGTCCGGTTTAAAGTGACCGAGACGAAGGGGAAAA   1294

BSNT_05464      1212 --------------------------------------------------   1212
                                                                       
RBAM_032960__   1295 GCCTTGAAGAAATTGAGCAGGATCTGAAAAGCCGTAACGGAGGCTCGGGA   1344

BSNT_05464      1212 ---------------------------------   1212
                                                      
RBAM_032960__   1345 TCAGAATCAAATCGGCGGACAGTTCATCCGTAA   1377


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