Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05464 and RBAM_032960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:57
# Commandline: needle
# -asequence dna-align/BSNT_05464.1.9828.seq
# -bsequence dna-align/RBAM_032960___ywtG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05464-RBAM_032960___ywtG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05464-RBAM_032960___ywtG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05464
# 2: RBAM_032960___ywtG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1383
# Identity: 956/1383 (69.1%)
# Similarity: 956/1383 (69.1%)
# Gaps: 177/1383 (12.8%)
# Score: 3621.0
#
#
#=======================================
BSNT_05464 1 ATGAAAAAG----CAGTCAAATATATGGCTTTATTTTTTCGGAGCTCTTG 46
||| ||||| ||.||.||||.||||||.|||||||||||.||.||.|
RBAM_032960__ 1 ATG-AAAAGCATACACTCGAATAAATGGCTCTATTTTTTCGGCGCACTCG 49
BSNT_05464 47 GAGGCGCGTTATATGGCTATGATACCGGAGTGATTTCCGGAGCTATTTTA 96
|.|||||||||||.||.||||||||||||||.||||||||||||||||||
RBAM_032960__ 50 GCGGCGCGTTATACGGATATGATACCGGAGTCATTTCCGGAGCTATTTTA 99
BSNT_05464 97 TTTATGAAAAAGGAGTTAGGATTGAATGCGTTTACAGAAGGTCTTGTTGT 146
|||||||||||.||..|.|||.||||.||.|||||||||||.||.||.||
RBAM_032960__ 100 TTTATGAAAAAAGAACTGGGACTGAACGCCTTTACAGAAGGCCTCGTCGT 149
BSNT_05464 147 CAGCTCCTTACTGGTTGGGGCGATACTAGGCTCGGGAGCGGCCGGCAAGC 196
|||.||.|||.|||..||||||||.||.||.||||||...||||||||.|
RBAM_032960__ 150 CAGTTCGTTATTGGCGGGGGCGATTCTCGGATCGGGATTCGCCGGCAAAC 199
BSNT_05464 197 TGACTGACCGTTTCGGAAGAAAAAAAGCAATTATGACGGCCGCGCTGTTG 246
||||.|||||.|||||.||....||.||.||.|||...||.||||||.||
RBAM_032960__ 200 TGACCGACCGGTTCGGCAGGCGGAAGGCCATCATGGGAGCGGCGCTGCTG 249
BSNT_05464 247 TTTTGTATAGGCGGTCTTGGTGTGGCACTGGCCCCAAATACGGGAGTCAT 296
|||||||||||||||.|.||.||.||..|.|||||.|||||.|..||.||
RBAM_032960__ 250 TTTTGTATAGGCGGTTTAGGAGTCGCTTTTGCCCCGAATACAGAGGTGAT 299
BSNT_05464 297 GGTGCTGTTTCGCATCATTTTGGGACTTGCAGTCGGAACATCGACGACGA 346
|||.||.||.||.||||||.|.|||||.||.|||||||||||.||.||||
RBAM_032960__ 300 GGTTCTTTTCCGGATCATTCTCGGACTGGCTGTCGGAACATCTACAACGA 349
BSNT_05464 347 TCGTGCCGCTTTATTTATCTGAACTGGCGCCAAAGCATAAGCGCGGGGCG 396
||||.|||||.||||||||.||.|||||.||.||||||||.||.||||||
RBAM_032960__ 350 TCGTTCCGCTCTATTTATCGGAGCTGGCTCCGAAGCATAAACGGGGGGCG 399
BSNT_05464 397 CTGTCATCACTGAATCAGCTGATGATCACGGTCGGCATCCTTCTTTCTTA 446
||.||.||.|||||||||||||||||.||||||||.|||||..|||||||
RBAM_032960__ 400 CTTTCTTCGCTGAATCAGCTGATGATTACGGTCGGAATCCTCGTTTCTTA 449
BSNT_05464 447 CATTGTCAATTACATATTTGCCGATGCCGAAGCGTGGCGCTGGATGCTTG 496
.||.||.||.||.||||||||||||||.|..||.||||||||||||||||
RBAM_032960__ 450 TATCGTGAACTATATATTTGCCGATGCAGGCGCTTGGCGCTGGATGCTTG 499
BSNT_05464 497 GATTGGCTGCTGTGCCGTCATTGCTCTTGCTCATTGGCATTTTGTTTATG 546
||.|.||.|.||||||||||.|..|..||||.||.||.||..|.||||||
RBAM_032960__ 500 GACTTGCGGTTGTGCCGTCAGTCATTCTGCTGATCGGAATCCTATTTATG 549
BSNT_05464 547 CCGGAGAGCCCGCGCTGGCTGTTCACGAATGGCGAAGAA-AGCAAAGCGA 595
|||||.|||||||||||||||||.||||..|||.||||| || ||||| |
RBAM_032960__ 550 CCGGAAAGCCCGCGCTGGCTGTTTACGATCGGCAAAGAAGAG-AAAGC-A 597
BSNT_05464 596 AGA-ACATTCTTGAAAAGTTGCGTGGCACAACAG-ATATTGATCAGGAAA 643
||| |.||.|||..|...|||||.||.||.| || ||||||||.|.||.|
RBAM_032960__ 598 AGAGAAATCCTTTCATCATTGCGGGGAACGA-AGAATATTGATGATGAGA 646
BSNT_05464 644 TACATGATATAAAAGAAGCGGAAAAGCAGGATGAAGGCGGCCTGAAGGAG 693
|..||.|.||.|||||||||||||||.|..|.|||||||||.||||.||.
RBAM_032960__ 647 TTGATCAGATGAAAGAAGCGGAAAAGGAAAACGAAGGCGGCTTGAAAGAA 696
BSNT_05464 694 CTGTTCGATCCATGGGTGCGCCCAGCCCTGATTGCCGGTTTGGGATTGGC 743
.||||.||.||.||||||.|.||.||.|||||||||||..|.|||.|.||
RBAM_032960__ 697 TTGTTTGAGCCGTGGGTGAGACCCGCGCTGATTGCCGGCCTCGGACTTGC 746
BSNT_05464 744 ATTTTTGCAGCAATTTATCGGAACGAATACGATCATCTACTATGCGCCAA 793
.||||||||||||||.|||||.||.|||||.||.||.||.||.||.||.|
RBAM_032960__ 747 CTTTTTGCAGCAATTCATCGGGACAAATACAATTATTTATTACGCCCCGA 796
BSNT_05464 794 AAACCTTTACAAACGTCGGATTCGGAAACTCCGCTTCAATTTTAGGAACG 843
||||.|||||.|..|||||.|||||.||.|||||.||.||.||.||||||
RBAM_032960__ 797 AAACATTTACCAGTGTCGGGTTCGGCAATTCCGCGTCTATATTGGGAACG 846
BSNT_05464 844 GTCGGAATCGGCACAGTCAATGTTGTCATGACATTAGTAGCGATTAAAAT 893
||||||||||||.|.||||||||..|||||||..|.|..||.||||||.|
RBAM_032960__ 847 GTCGGAATCGGCGCTGTCAATGTCATCATGACGCTTGCGGCTATTAAAGT 896
BSNT_05464 894 CATCGACAAGATTGGAAGAAAGCCGTTACTGCTATTCGGGAATGCGGGAA 943
|||.||.|||||.||..|.||||||.|.|||||...|||.||||||||.|
RBAM_032960__ 897 CATTGATAAGATCGGCCGGAAGCCGCTGCTGCTGGCCGGTAATGCGGGCA 946
BSNT_05464 944 TGGTGATCAGCTTGATCGTTCTCGCTTTAGTAAATCTCTTTTTCGATAAC 993
||||.|||||..||.||||..|.||....||.|||||.||.||.| |||
RBAM_032960__ 947 TGGTCATCAGTCTGCTCGTATTGGCCGCGGTCAATCTTTTCTTTG--AAC 994
BSNT_05464 994 ACTC--CGGCTGCCTCATGGACGACCGTCATTTGTTTAGGCGTGTTTATC 1041
|.|| |.||.||.||||||||.||.||.||||||||||||.||||||||
RBAM_032960__ 995 ATTCAGCAGCCGCATCATGGACAACGGTGATTTGTTTAGGCCTGTTTATC 1044
BSNT_05464 1042 GTTGTCTTTGCGGTCAGCTGGGGACCGGTTGTGTGGGTGATGCTTCCTGA 1091
.||||.|||||||||||||||||.||.|..||||||||.|||||||||||
RBAM_032960__ 1045 ATTGTGTTTGCGGTCAGCTGGGGGCCTGCCGTGTGGGTCATGCTTCCTGA 1094
BSNT_05464 1092 ATTGTTCCTGCTTCATGTCAGAGGAATCGGGACCGGTGTTTCGAC----- 1136
|||.||||.|||.||||||.|.||.||||||||.|||||.||.||
RBAM_032960__ 1095 ATTATTCCCGCTGCATGTCCGGGGTATCGGGACGGGTGTCTCCACTTTAA 1144
BSNT_05464 1137 ---------------------------CA---------GCGATG------ 1144
|| .|||||
RBAM_032960__ 1145 TGCTGCATGCCGGAACATTGATTGTCTCATTAACCTATCCGATGTTAATG 1194
BSNT_05464 1145 ---------GGAATCAGTTATTTATTCCTGATTTATGCCGCGATCGGTAT 1185
||.|||||.||||||||.||.|||||||||||||||||.||
RBAM_032960__ 1195 GAAGCAGTCGGCATCAGCTATTTATTTCTCATTTATGCCGCGATCGGGAT 1244
BSNT_05464 1186 CATGGCGTTCTTATTTGTCCGATTTAA----------------------- 1212
..||||.|||.|.||.|||||.|||||
RBAM_032960__ 1245 ACTGGCATTCCTGTTCGTCCGGTTTAAAGTGACCGAGACGAAGGGGAAAA 1294
BSNT_05464 1212 -------------------------------------------------- 1212
RBAM_032960__ 1295 GCCTTGAAGAAATTGAGCAGGATCTGAAAAGCCGTAACGGAGGCTCGGGA 1344
BSNT_05464 1212 --------------------------------- 1212
RBAM_032960__ 1345 TCAGAATCAAATCGGCGGACAGTTCATCCGTAA 1377
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