Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05460 and RBAM_032930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:56
# Commandline: needle
# -asequence dna-align/BSNT_05460___gerBB.1.9828.seq
# -bsequence dna-align/RBAM_032930___gerBB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05460___gerBB-RBAM_032930___gerBB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05460___gerBB-RBAM_032930___gerBB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05460___gerBB
# 2: RBAM_032930___gerBB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1135
# Identity: 792/1135 (69.8%)
# Similarity: 792/1135 (69.8%)
# Gaps: 56/1135 ( 4.9%)
# Score: 2575.0
#
#
#=======================================
BSNT_05460___ 1 ATGAGGCAATCAGAGGACAAGCTTACATTTATGCAGACGCTTATTATGGT 50
||||...||.|.||.||||||||..|.|||||||||||.|||.|.|||||
RBAM_032930__ 1 ATGAAAAAACCGGAAGACAAGCTGTCGTTTATGCAGACACTTCTCATGGT 50
BSNT_05460___ 51 AAGCAGTACAATGATCGGTGCTGGCGTCTTAACCCTTTCCCGCTCAGCCG 100
||||.|.|||||||||||.||.|||||.|||||.||..|.|||||.||||
RBAM_032930__ 51 AAGCGGAACAATGATCGGAGCGGGCGTGTTAACACTGCCGCGCTCCGCCG 100
BSNT_05460___ 101 CTGAAACCGACAGTCCGATTGGATGGATCATGATCCTGCTGCAGGGCGTT 150
|...|.|.||||||||||..|||||||||||.||.||..|||||.|.||.
RBAM_032930__ 101 CAACAGCGGACAGTCCGAGCGGATGGATCATTATTCTTGTGCAGAGTGTC 150
BSNT_05460___ 151 ATTTTTAT---TATTTTTTCTCTGCTTTTTTTGCCTTTTCTTCAACGAAA 197
.|.||||| .||..| .|||||.|||.||||.|||.|.||...|||
RBAM_032930__ 151 GTGTTTATCGGCATCGT---CCTGCTCTTTATGCCGTTTTTGCAGAAAAA 197
BSNT_05460___ 198 CAGCGGGAAAACGATTTTTGAGC----TCAACAGCAT----TGCAGCGGG 239
|||||||.||||.||||.||||| |||| ||||| .||.|||..
RBAM_032930__ 198 CAGCGGGGAAACCATTTATGAGCTGAATCAA-AGCATCATGGGCCGCGCC 246
BSNT_05460___ 240 AAAAGTGGTTGGTTTCT-TTTTGAATGTATTTATTTCC--CTG-TATTTT 285
| |.|.|||| ||.|||||.||||.|| | ||| ||||||
RBAM_032930__ 247 A--------TCGGTTCTCTTCTGAATTTATTCAT---CAGCTGTTATTTT 285
BSNT_05460___ 286 ATCGGTATCGTATGTTTTCAGACACGGATTTTAGGCGAGGTTGTCGGATT 335
.|||..|.|||.||||||||..|.||..||.|.||.||.||..|| .|||
RBAM_032930__ 286 GTCGTCACCGTCTGTTTTCAAGCCCGTTTTCTCGGTGAAGTCATC-AATT 334
BSNT_05460___ 336 -CTTTCTTTTAAAAAACACACCGATGGCGGTTGTTGTGATCATTTTTCTG 384
||||.|..|.|||||.||.|||||||..||.||..|..||||.||||||
RBAM_032930__ 335 ACTTTTTACTGAAAAATACGCCGATGGGTGTCGTCATATTCATCTTTCTG 384
BSNT_05460___ 385 GCAGTTGCCATTTATCATGTGGCTGGGGGCGTATACCCCATTGCAAAGGT 434
||.||.|.||||||.||||||.|.||.||.||.||.||||||.|||||.|
RBAM_032930__ 385 GCGGTCGGCATTTACCATGTGACCGGCGGGGTCTATCCCATTTCAAAGCT 434
BSNT_05460___ 435 ATATGCATATATCTTCCCTATTACAATTATTATTTTTCTCATGCTTTTGA 484
.|||||.|||.|.||.||.|||.|.||..|.|||.|..|.|.|||..|.|
RBAM_032930__ 435 TTATGCCTATCTGTTTCCGATTGCGATCGTCATTCTGATTACGCTGCTCA 484
BSNT_05460___ 485 TGTTTAGCTTTCGTTTGTTTCAGTTAGATTTTATACGGCCCGTTTTTGAA 534
|.||.||.||..|..|||||.||.|.|||||..|.||.||.||..|.|||
RBAM_032930__ 485 TATTCAGTTTGAGACTGTTTAAGCTGGATTTCGTCCGCCCGGTCATGGAA 534
BSNT_05460___ 535 GGCGGCTTTCAAAGTTTTTTTTCTTTATTTCCTAAAACCCTTTTATATTT 584
||.||||...||||.||||||....|.|||||....||||||.|.|||||
RBAM_032930__ 535 GGAGGCTACAAAAGCTTTTTTGAGCTGTTTCCGCGGACCCTTCTGTATTT 584
BSNT_05460___ 585 TTCTGGATTTGAAATTATTTTTTATCTCGTTCCCTTTATGAAAGATCCAA 634
|||.|||.||||..|.|||.|||||||.||.||.|||||||||.|.||.|
RBAM_032930__ 585 TTCGGGACTTGAGGTGATTCTTTATCTGGTGCCGTTTATGAAAAACCCGA 634
BSNT_05460___ 635 AGCAGGTAAAAAAAGCTGTCGCCTTTGGTATTGTAACCTCAACTGTTTTC 684
||||||..|||||.||.|..|.|||.||.||.|.|..|.|.|...||||.
RBAM_032930__ 635 AGCAGGCGAAAAAGGCGGCTGTCTTCGGCATCGCAGGCGCGAGCATTTTT 684
BSNT_05460___ 685 TACAGCATTACTTTGTTTATTGTCATTGGCTGTATGAGTGTGGCTGAGGC 734
||||||.||||..||.||.|.|||||.|||||||||...||.|||||.||
RBAM_032930__ 685 TACAGCTTTACGCTGCTTGTCGTCATCGGCTGTATGTCGGTCGCTGAAGC 734
BSNT_05460___ 735 AAAAACAGTGACGTGGCCGACGATTTCACTCATTCATGCATTAGAAATCC 784
.|||||.|||||||..|||||.|||||.||.||||||||.||.||||||.
RBAM_032930__ 735 CAAAACGGTGACGTATCCGACCATTTCCCTGATTCATGCCTTGGAAATCA 784
BSNT_05460___ 785 CGGGCATTTTTATTGAACGGTTTGACCTGTTT-TTACAGTTAACTTGGAC 833
.|||||||||.||.||.||||||||..|.||| ||..|.|| ||.|||||
RBAM_032930__ 785 GGGGCATTTTCATAGAGCGGTTTGATATCTTTCTTTTAATT-ACGTGGAC 833
BSNT_05460___ 834 A-GCACAGCAATTTGCATGTATGCTCGGCTCCTTTAAAGGGGCGCATATC 882
| || |||||.||..|.||||||||||||||.|||||||||||||||.||
RBAM_032930__ 834 ATGC-CAGCAGTTCACCTGTATGCTCGGCTCTTTTAAAGGGGCGCATCTC 882
BSNT_05460___ 883 GGATT-AACAGATATCTTCCACCTGAAAAATAAAAACAATCCTTGGCT-- 929
||||| |||| ..||.|||...||||||||||||||||||.|.|||||
RBAM_032930__ 883 GGATTAAACA-CCATTTTCAGACTGAAAAATAAAAACAATGCCTGGCTGA 931
BSNT_05460___ 930 ------GCTTACTGCATTGCTGGCTGTTACATTTTTTCTATCAATGTTTC 973
||||| .||||.||.|||||....||.||.||||..|
RBAM_032930__ 932 TGGGGAGCTTA--------TTGGCAGTGACATTCGGCCTTTCGATGTACC 973
BSNT_05460___ 974 CTGAAGATCTTAATGCCGTGTTT-TATTACGGTACACTTCTCGGATATAT 1022
|.||.|||.|.|||...|||||| .|||...|.|.| |||||||||||..
RBAM_032930__ 974 CCGATGATATCAATAGTGTGTTTGCATTTGCGAATA-TTCTCGGATATGC 1022
BSNT_05460___ 1023 ATTTCTAGGCATCATTGTAATACCATTTTTCATCTGGTTTTTAAGCTGGA 1072
.|||.|.|.|.|||||.|.||.||.|||.|||||||||||.|.|||||||
RBAM_032930__ 1023 GTTTTTTGCCGTCATTATGATTCCTTTTCTCATCTGGTTTGTCAGCTGGA 1072
BSNT_05460___ 1073 TACAGAAAAAACTGGGGAGGGGGCAGCTGCAATGA 1107
|..|.||||.|.|.||||||...|||..|..||||
RBAM_032930__ 1073 TGAAAAAAATAGTCGGGAGGAAACAGACGTCATGA 1107
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