Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05457 and RBAM_032910

See Amino acid alignment / Visit BSNT_05457 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:56
# Commandline: needle
#    -asequence dna-align/BSNT_05457___pmi.1.9828.seq
#    -bsequence dna-align/RBAM_032910___pmi.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05457___pmi-RBAM_032910___pmi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05457___pmi-RBAM_032910___pmi.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05457___pmi
# 2: RBAM_032910___pmi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 972
# Identity:     716/972 (73.7%)
# Similarity:   716/972 (73.7%)
# Gaps:          42/972 ( 4.3%)
# Score: 2522.5
# 
#
#=======================================

BSNT_05457___      1 ATGACGCAATCACCGATTTTTCTAACGCCTGTGTTTAAAGAAAAAATCTG     50
                     |||||||||...|||||||||.||..||||||.|.||||||||||.|.||
RBAM_032910__      1 ATGACGCAAGAGCCGATTTTTTTACAGCCTGTATGTAAAGAAAAACTATG     50

BSNT_05457___     51 GGGCGGAACCGCT-TTACGAGATAGATTTGGATACAGTATTCCTTCAGAA     99
                     ||||||.| ||.| |||||.||..||||.|||||....||.|||||||||
RBAM_032910__     51 GGGCGGCA-CGTTATTACGCGAACGATTCGGATATGACATACCTTCAGAA     99

BSNT_05457___    100 TCAACGGGGGAATGCTGGGCCATTTCCGCTCATCCAAAAGGACCGAGCAC    149
                     .||||.||.|||||||||||.||.||.||.|||||..|.|||..||||||
RBAM_032910__    100 ACAACCGGCGAATGCTGGGCGATATCAGCCCATCCGCACGGAATGAGCAC    149

BSNT_05457___    150 TGTTGCAAA--TGGCCCGTATAAAGGAAAGACATTGATCGAGCTTTGGGA    197
                     .||  ||||  .||.||||||.||||.||.||.|||||.||.||.|||||
RBAM_032910__    150 GGT--CAAAAGCGGTCCGTATCAAGGGAAAACCTTGATGGAACTGTGGGA    197

BSNT_05457___    198 AGAGCACCGTGAAGTATTCGGCGGTGTAGAGGGGGATCGGTTCCCGCTTC    247
                     ..||||..|.|||.||||||||||....||.|||||.|||||.|||||.|
RBAM_032910__    198 TCAGCATAGAGAATTATTCGGCGGAACGGAAGGGGACCGGTTTCCGCTGC    247

BSNT_05457___    248 TGA--AAAAGCTGCTGGATGTGAAGGAAGGTACGTCAATTAAAGTTCACC    295
                     |||  ||||  |.|||||.||.||..||..|..|||..|||||||.||.|
RBAM_032910__    248 TGACGAAAA--TACTGGACGTCAAACAACATCTGTCCGTTAAAGTCCATC    295

BSNT_05457___    296 CTGATGATTACTATGCCGGAGAAAACGAAGAGGGAGAACTCGGCAAGACG    345
                     ||||.|||||..|.||||..||..|.|.|..|||.|||...||.||..|.
RBAM_032910__    296 CTGACGATTATGACGCCGAGGATCATGGACTGGGCGAAACGGGGAAATCT    345

BSNT_05457___    346 GAATGCTGGTACATTATCGACTGTAAGGAAAACGCAGAAATCATTTACGG    395
                     ||.||||||||||||||.||||||||.|||||.||.||||||||.|||||
RBAM_032910__    346 GAGTGCTGGTACATTATTGACTGTAAAGAAAATGCGGAAATCATATACGG    395

BSNT_05457___    396 GCATACGGCCCGCTCAAAAACCGAACTTGTCACAATGATCAACAGCGGTG    445
                     .||.||||||||.||.|||.|.|||||||||||.|||||.||||||||||
RBAM_032910__    396 TCACACGGCCCGTTCGAAAGCGGAACTTGTCACCATGATTAACAGCGGTG    445

BSNT_05457___    446 ACTGGGAGGGCCTGCTGCGAAGAATCAAAATTAAACCGGGTGATTTCTAT    495
                     |||||||.|||||||||||..|..|.|||||.|||||.||.|||||.|||
RBAM_032910__    446 ACTGGGAAGGCCTGCTGCGCCGTGTGAAAATCAAACCCGGCGATTTTTAT    495

BSNT_05457___    496 TATGTGCCGAGCGGAACGCTGCATG-CATTGTGCAAGGGGGCCCTTGTTT    544
                     |||||||||||||||||..|.|||| |||| |||..||||||.||.||..
RBAM_032910__    496 TATGTGCCGAGCGGAACCATCCATGCCATT-TGCGCGGGGGCGCTCGTGC    544

BSNT_05457___    545 TAGAGACTCAGCAAAATTCAGATGCCACATACCGGGTGTACGATTATGAC    594
                     |.||.||.|||||.||||||||.||..|.||||||.|.||.|||||    
RBAM_032910__    545 TTGAAACACAGCAGAATTCAGAGGCGGCCTACCGGATATATGATTA----    590

BSNT_05457___    595 CGGG----TTGATGACAACGGGAAGCCAAGAGAGCTTCATTTTGCCAAAG    640
                     ||||    ..|||.|.|||||..||.|..|.|||||.|||.|...|.|.|
RBAM_032910__    591 CGGGCGTACAGATCAAAACGGCCAGGCGCGTGAGCTGCATATCCGCGATG    640

BSNT_05457___    641 CGGTCAATGCCGCCACGGTTCCCCATGTGGACGGGTATATTGATGAATCG    690
                     |.|||||.||.|||||.|||||.|||||||||||.|.|.|.||||||||.
RBAM_032910__    641 CCGTCAACGCAGCCACCGTTCCTCATGTGGACGGATTTTTAGATGAATCA    690

BSNT_05457___    691 ACCGAATCAAGAAAAGGAATAACCATTAAAACGTTTGTCCAAGGGGAATA    740
                     ||.|||.|.||||||||..|.|||||.|||||.|||||.||.||.|||||
RBAM_032910__    691 ACTGAAACGAGAAAAGGCGTCACCATCAAAACCTTTGTGCAGGGAGAATA    740

BSNT_05457___    741 TTTTTCGGTGTATA--AATGGGACATCAATGG--CGAAGCTGAAATGGCT    786
                     ||||||  ||||||  |||||||.||||..||  ||  ||.||||||.|.
RBAM_032910__    741 TTTTTC--TGTATACCAATGGGATATCAGCGGGACG--GCGGAAATGACC    786

BSNT_05457___    787 CAGGATGAATCC-TTTCTGATTTGCAGCGTGATAGAAGGAAGCGGTTTGC    835
                     |||||.| .||| |||.||.|.||||||||.|.||||||||||||.|...
RBAM_032910__    787 CAGGACG-CTCCGTTTATGCTGTGCAGCGTCACAGAAGGAAGCGGCTCCA    835

BSNT_05457___    836 TGATGTATGAGAGAGAAACATGTCCGCTCA------AAAAAGGCGATCAC    879
                     |.||.|.|||     |..||.|||||| ||      |||||||||..||.
RBAM_032910__    836 TCATCTGTGA-----AGGCAAGTCCGC-CAAGCTTGAAAAAGGCGCGCAT    879

BSNT_05457___    880 TTTATTATGCCGGCTCAAATGCCCGATTTTACGATAAAAGGAACTTGTAC    929
                     ||.||..||||||.|||.|||||.||.|||||||||||.|||..|||.||
RBAM_032910__    880 TTCATACTGCCGGATCAGATGCCTGACTTTACGATAAACGGAGATTGCAC    929

BSNT_05457___    930 CCTTATCGTGTCTCATATTTAA    951
                     ..|.|||||.||||||||.|||
RBAM_032910__    930 GATCATCGTTTCTCATATATAA    951


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05457 and RBAM_032910

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
