Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05447 and RBAM_032830

See Amino acid alignment / Visit BSNT_05447 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:55
# Commandline: needle
#    -asequence dna-align/BSNT_05447.1.9828.seq
#    -bsequence dna-align/RBAM_032830___tagH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05447-RBAM_032830___tagH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05447-RBAM_032830___tagH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05447
# 2: RBAM_032830___tagH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1582
# Identity:     694/1582 (43.9%)
# Similarity:   694/1582 (43.9%)
# Gaps:         707/1582 (44.7%)
# Score: 2481.0
# 
#
#=======================================

BSNT_05447         1 ATGAAACTAAAAGTTTCGTTTCGAAATGTTTCAAAACAGTATCAGCTTTA     50
                     ||||||||||||||||||||..||||||||||||||||||||...||.||
RBAM_032830__      1 ATGAAACTAAAAGTTTCGTTCAGAAATGTTTCAAAACAGTATTTTCTATA     50

BSNT_05447        51 TGAAAAACAATCGGATAAAATTAAAGGGCTGTTTTTTCCGAA---TAAGG     97
                     |.|||||||.||.||.|||||||||||.||||||||.||.||   .||..
RBAM_032830__     51 TAAAAAACAGTCTGACAAAATTAAAGGACTGTTTTTCCCAAACAGAAATC    100

BSNT_05447        98 ATAAAAGTTTTTTTGCTGTTCGGAATGTCTCCTTTGACGTGTACGAAGGG    147
                     |.|||.|||||||.|||||.||.|||||.||.||||||||.||.||||||
RBAM_032830__    101 AAAAAGGTTTTTTCGCTGTCCGAAATGTTTCTTTTGACGTCTATGAAGGG    150

BSNT_05447       148 GAGACGATCGGATTTGTGGGGATTAATGGATCGGGAAAATCGACGATGTC    197
                     ||.|||||||||||.||.|||||.||.||.|||||||||||.||||||||
RBAM_032830__    151 GAAACGATCGGATTCGTAGGGATCAACGGCTCGGGAAAATCAACGATGTC    200

BSNT_05447       198 CAACCTGCTGGCAAAAATCATTCCGCCGACAAGCGGTGAAATTGAAATGA    247
                     |||..||||.|||||.||||||||||||||||||||.||.|||||.||||
RBAM_032830__    201 CAATTTGCTTGCAAAGATCATTCCGCCGACAAGCGGGGAGATTGATATGA    250

BSNT_05447       248 ACGGGCAACCTTCCCTGATTGCGATTTCCGCAGGATTAAACAATGCGCTG    297
                     |||||||.||.||..|.||.||||||||.||.|||||||||||| |..|.
RBAM_032830__    251 ACGGGCAGCCGTCTTTAATCGCGATTTCTGCCGGATTAAACAAT-CAATT    299

BSNT_05447       298 ACG-GGCAGAGATAACATTCGTCTCAAGTGTTTAATGATGGGTCTCACAA    346
                     |.| ||.|.|||.|||||||||.|.||.||.||.|||||||||||||..|
RBAM_032830__    300 AAGCGGTAAAGACAACATTCGTTTAAAATGCTTGATGATGGGTCTCAACA    349

BSNT_05447       347 ATAAAGAAATTGATGAGATGTATGACAGCATCGTTGAATTTGCTGAAATC    396
                     ||....|.||.||.|||.|.|||||.|..|||||||||||.||.||.|||
RBAM_032830__    350 ATCGGCAGATAGACGAGCTTTATGAAAAAATCGTTGAATTCGCGGATATC    399

BSNT_05447       397 GGCGAGTTTATCAATCAGCCGGTCAAAAGCTATTCCAGCGGAATGAAGTC    446
                     |||||.|||||..|||||||.||.|||||||||||.|||||.|||||.||
RBAM_032830__    400 GGCGACTTTATAGATCAGCCTGTTAAAAGCTATTCAAGCGGGATGAAATC    449

BSNT_05447       447 CCGGCTTGGCTTTGCGATCTCAGTGCATATTGATCCCGATATTTTAATTA    496
                     |||.||.||.|||||.||.||.|.||||||.||.||.|||||..|.||||
RBAM_032830__    450 CCGTCTCGGTTTTGCCATATCGGCGCATATGGACCCTGATATCCTTATTA    499

BSNT_05447       497 TTGACGAAGCGTTATCAGTAGGTGATCAAACCTTCTATGATAAATGTGTC    546
                     ||||.||.|||.|.||||||||.||.||.||.||||||.|.||||||||.
RBAM_032830__    500 TTGATGAGGCGCTCTCAGTAGGGGACCAGACTTTCTATCAGAAATGTGTG    549

BSNT_05447       547 GACAGAATTACCGAGTTTAAAAATCAAGGGAAAACCATTTTCTTTGTCAG    596
                     |||.|.|||||.|||||||||.|.|..||.|||||.||.||.||.|||||
RBAM_032830__    550 GACCGCATTACGGAGTTTAAAGAACGCGGCAAAACGATCTTTTTCGTCAG    599

BSNT_05447       597 CCATTCAATTGGTCAAATCGAGAAAATTTGCGATCGGGTCGCCTGGATCG    646
                     .|||||.||.||.||.||.||||||||.||.||||||||.||.|||||..
RBAM_032830__    600 TCATTCCATCGGACAGATTGAGAAAATGTGTGATCGGGTGGCTTGGATGC    649

BSNT_05447       647 ATAATGGCGAGCTTCGAATGTTTGATGATAC-AAAGACGGTCGTAAAGGA    695
                     ||.|.|||||..|.||.|||||.||.||.|| |||| |.||.||.||.||
RBAM_032830__    650 ATTACGGCGAAATGCGCATGTTCGACGAAACGAAAG-CCGTTGTGAAAGA    698

BSNT_05447       696 ATATAAAGAATTT----ATCAGCTGGTTTAAAAAGCTTTCCATAAAAGAG    741
                     ||||||||..|||    ||    |||||.||.||||||||.|..||||| 
RBAM_032830__    699 ATATAAAGCTTTTGTGGAT----TGGTTCAACAAGCTTTCAAAGAAAGA-    743

BSNT_05447       742 AAAG-ACAAATATAAAAAAGAGCA-ATTAGCAAGTCGCAAAA-------A    782
                     |||| |.||||||.||||.||||| |||  .|||  |||.||       |
RBAM_032830__    744 AAAGAAGAAATATCAAAACGAGCAGATT--GAAG--GCAGAACGCGGGCA    789

BSNT_05447       783 GGTTTTGTCCGA-----AGAAGATCTAGCTCA--TCCTGAAAAAGAAAAG    825
                     |       ||||     ||||.||| || |||  ..|.|.||||| ||||
RBAM_032830__    790 G-------CCGAGGAACAGAAAATC-AG-TCAGGCGCAGCAAAAG-AAAG    829

BSNT_05447       826 AAAAAACAAAAATCTTTGGCAAATATCATTCCGATTGCAGGTTTATCCAT    875
                     ..||..|.|||.||.|| ||.||||..||||.||||            |.
RBAM_032830__    830 CGAAGCCCAAATTCATT-GCCAATACGATTCAGATT------------AC    866

BSNT_05447       876 CCTGCTCGTATTG---------GCCGCCGGAG---CGATGTTTGTTTAA-    912
                     .|||||.|.||||         |.|||.||.|   ||||||   |||.| 
RBAM_032830__    867 GCTGCTTGCATTGCTGGCTGTCGGCGCAGGCGCTTCGATGT---TTTCAG    913

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__    914 ACAAGCCTCTGCGTGCGATTACATCTTTCGGTGACGTCAAACAGAGCGAT    963

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__    964 GCCGGCCTTTATGAGTCTGTGAATAAACCTGCTTTGGTAAAAGCTGAAAA   1013

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1014 GGCGGACCTTTATACTGAAAAAGATATAAAAGGAAAAGCCTCCGCAAGTG   1063

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1064 TAAGTTTCGGCACGAAGGTGCAGGTAGAAGCCGAAAATAACCAGGCGGCC   1113

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1114 AAAGTGAAATTAAACGATAAAGAGTACTTTATGAAAAAGACTGATCTGTA   1163

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1164 TAAAGTGAACGCTTTAAAAAAGACGGATGTTCAGCTTAATGATTTCAGCG   1213

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1214 GCAGTTTATCAAGCCAAACAGCAGAAGAGTTTCTCTCATATCTCAATAAA   1263

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1264 AGCCGGGACGATGTGCAGAGTAAACTGAAAAATCCAGCTGCCGGACAAAC   1313

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1314 GGCTGACGGACGGAACGTATTAAAAACATCCGATGCAAAAACGGATGTAG   1363

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1364 TGATTGACAAGGATACAGTCTCCGAAGTGGTTTTTCATTTATCGCGTCCC   1413

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1414 GCAGACATCTCAGCTTTAAGTGAAAAAGGCGGCAGCAAAATCAATCAGAA   1463

BSNT_05447       912 --------------------------------------------------    912
                                                                       
RBAM_032830__   1464 TTTGCTCATGCTTAAAAACCAGGAATATACTTTTTCTGTGAACAATGCTG   1513

BSNT_05447       912 --------------------------------    912
                                                     
RBAM_032830__   1514 ATCAAACACTGACCGTAACGTCTAAAAAGTAA   1545


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