Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05427 and RBAM_032770
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:54
# Commandline: needle
# -asequence dna-align/BSNT_05427___lytC.1.9828.seq
# -bsequence dna-align/RBAM_032770___lytC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05427___lytC-RBAM_032770___lytC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05427___lytC-RBAM_032770___lytC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05427___lytC
# 2: RBAM_032770___lytC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1730
# Identity: 922/1730 (53.3%)
# Similarity: 922/1730 (53.3%)
# Gaps: 508/1730 (29.4%)
# Score: 2100.5
#
#
#=======================================
BSNT_05427___ 1 -----------------ATGT-----TGTTGTTA-----GGGTTCTTTTT 23
|||| .||..||| |||.||.||.|
RBAM_032770__ 1 TTGAAATTCATCATAAAATGTCTCCCCGTCTTTATTCTCGGGGTCATTCT 50
BSNT_05427___ 24 GTTTATGCCTAATGTATTTGCGGCCAACTCTGTCACAAGATTAGACGGTG 73
.|||.|.|||...|..||.||.|.||||.|.||.|.|||..|.|.|||
RBAM_032770__ 51 ATTTGTCCCTTCCGCTTTGGCTGACAACACGGTTAAAAGGATCGGCGG-- 98
BSNT_05427___ 74 TAAA----TCGTTATGA---GG------TTGCGGTGAACGTTTCCAAGCA 110
|| .||.||||| || |.||||..|| .|||.||
RBAM_032770__ 99 --AAGCACCCGGTATGATACGGCTGTACTGGCGGCAAA-----ACAATCA 141
BSNT_05427___ 111 GGGATGGTCAAGTGCAAGCACTGTCATTGTTGCAAAT-------GGAAAG 153
.|| |||.|||.|.|| ||.||.||| || ||||..
RBAM_032770__ 142 TGG--GGTGAAGCGAAA--ACGGTAATT-------ATCACCGGCGGAACT 180
BSNT_05427___ 154 GCATATGCAGACGTCCTTTCAGCAACTCCATTTGCCTATCGAAACAACGC 203
.|||||||.||.|...||.|.||..|.||..||.|.||||.|||.||.||
RBAM_032770__ 181 TCATATGCCGATGCAATTGCCGCTGCGCCGCTTTCATATCAAAAAAATGC 230
BSNT_05427___ 204 GC-----CTGTT--CTATTAACTGA--AGC-GTCTAAATTACCAACGGCG 243
|| ||||| |.|.||| .|| ||| |||| ..||||
RBAM_032770__ 231 GCCGCTGCTGTTTACAAATAA-AGATCAGCTGTCT--------GCCGGC- 270
BSNT_05427___ 244 ACAAAAAACCGAATTAGTCAGTTAAAACCTAGCAAAGTG---ATCGTAAT 290
||||||||..||.|.|.|.|.||||||.|.|..||.||| ||||||
RBAM_032770__ 271 ACAAAAAAGGGATTAATTGATTTAAAAACGAAAAATGTGATTATCGTA-- 318
BSNT_05427___ 291 CGGCGGAA------CCGTCAGCGTTC----AAAACGGCGTCGTAAACGAG 330
|||||.| |||| ||| ||.||.| |||
RBAM_032770__ 319 -GGCGGCACACCTGCCGT-----TTCGAAAAATACTG------AAA---- 352
BSNT_05427___ 331 ATTAAAAAGCTTGGTGTGTCATC--TGTCGAACG--CATCGGCGGAGCGA 376
||.|||..|||...|..|.|||| ||||.|||| .|||.| |||||
RBAM_032770__ 353 ATCAAATTGCTAAATTAGGCATCAGTGTCAAACGATTATCAG-GGAGC-- 399
BSNT_05427___ 377 ATCGCTACGAGGTTGCGGCGAATAT--------TGCAAATAAGTTGC--- 415
||||| |||| .|||| ||||.||
RBAM_032770__ 400 ------ACGAG----------ATATGCCACAGCCGCAA--AAGTGGCGGG 431
BSNT_05427___ 416 CGAAA----AA----TTCAAAAGC---TGTCATCGCAAACGGAACGGCGT 454
.|||| || |||.|.||| |||..|| ||||| ||
RBAM_032770__ 432 TGAAATGACAAGATCTTCTACAGCCCTTGTGGTC--------AACGG-GT 472
BSNT_05427___ 455 ATGCTGA--CA--------GCCTAGCGATCGGCGCATATG---CCGCAAG 491
.||.||| || |.|| ||||| ..|.|||| ||||.|.
RBAM_032770__ 473 TTGTTGATGCAGATGGAATGGCT-GCGAT---TTCTTATGCGTCCGCTAA 518
BSNT_05427___ 492 AAACGGCAT-TCCGATTCTTTTAA---------CATCGTCAAAT------ 525
||| || |||||||.|.||.| ||.|||.||||
RBAM_032770__ 519 AAA----ATATCCGATTTTATTCACTAATGATTCAACGTTAAATGGTTCT 564
BSNT_05427___ 526 ---TCCATACCGACAGCGACAAAAAATGCAATGAAGAGCAAAGG----AA 568
||| |||||.||.||.|||..||| ||
RBAM_032770__ 565 ACGTCC------------------AATGCGATCAAAAGCTTAGGGATTAA 596
BSNT_05427___ 569 CAACATCGACCATCGTCGTAGGCGGTG--AAGTCAGCATCTCCAGCAGC- 615
.||| ||.||.|||.|.||||| | ||| |||||| |||||||
RBAM_032770__ 597 AAAC----ACGATTGTCATTGGCGG-GACAAG-CAGCAT---CAGCAGCT 637
BSNT_05427___ 616 --GTATACAAACAGCTTGCTTCTCCGA------CGCGGATCGGCGGCAGC 657
.|.|||||..|.|| .|||| |..|.|||.||||||..
RBAM_032770__ 638 CACTTTACAATAAACT------GCCGAACCCTTCAAGAATCAGCGGCAAA 681
BSNT_05427___ 658 AACCGCTATGAAGTCGCGGCAAA--TGTC-GTCAAGAAATATTATTCTTC 704
||||||||| || |||| ||.|| |||
RBAM_032770__ 682 AACCGCTAT------------AACCTGTCTGTGAA----------TCT-- 707
BSNT_05427___ 705 TGCGAAGAATGCA--ATTATCAGCAACGGCTATGCGTATG---CCGATGG 749
|||.||.||..|| .||| ||||..||||||.|||.|| ||.||||
RBAM_032770__ 708 TGCAAAAAAGACAGGCTTA--AGCACAGGCTATACGTTTGTTACCAATGG 755
BSNT_05427___ 750 ATT--AACAGG--------ATCTGTTC--TGGCG-GCTAA--GCAAAACC 784
.|| ||.||| ||| .|| .|||| |||.| ||.||||.
RBAM_032770__ 756 TTTTAAAGAGGCGGATACCATC--GTCGGAGGCGTGCTGAGCGCCAAACA 803
BSNT_05427___ 785 GTCCGATGATGTTC--------ACGAATGCATCGTCTTTGCCGACA--CC 824
| .||.|| |||| |||||||.| |||| |.
RBAM_032770__ 804 G--GGAAGA-GTTCACCTGCTGACGAATGGA-----------GACAGTCT 839
BSNT_05427___ 825 GACAAGAGAAGT---------GATCGGTTCCAAAAACATGACGACGTTTA 865
|.|||.|||.|| .|||||....||||||||.||.|..||.|
RBAM_032770__ 840 GTCAAAAGACGTCCGGACGTATATCGGAAGTAAAAACATCACCAGCTTCA 889
BSNT_05427___ 866 CCGTGCTTGGCGGAACGGTTTC-TCTTCAATC--CAATGTCGTGTCACAG 912
||||..| .||||..|..|| ||||.||.| |||||.||.|||.|||
RBAM_032770__ 890 CCGTCAT---AGGAAGTGCGTCATCTTTAAGCAACAATGCCGCGTCGCAG 936
BSNT_05427___ 913 CTGAAAAATCCGATCGTCGGCAAAAAAATCTTCATTGATGCAGGGCACGG 962
||.||||||||..|.||||||||||...||||.||||||.|.||||||||
RBAM_032770__ 937 CTTAAAAATCCCGTTGTCGGCAAAACGGTCTTTATTGATCCGGGGCACGG 986
BSNT_05427___ 963 -----AGG-TACAGACAGCGGTGCTATCGGCAACAGTCTATATGAAAAAA 1006
||| |.|| ||.||.|.|||||||.|..|...|||.||||
RBAM_032770__ 987 CTATCAGGATTCA------GGAGCAACCGGCAACGGCTTGCTTGAGAAAA 1030
BSNT_05427___ 1007 GTGTGAACCTTGATGTTGCAAAATTA-----ATTAATACGAAATTATCAA 1051
.|||.||.||||||.|.|| || .||||.|...||||||
RBAM_032770__ 1031 ATGTAAATCTTGATATCGC-----TACGCGTCTTAACAATCAATTAT--- 1072
BSNT_05427___ 1052 ACGGCG-----GTGCT--CTGCCAATAATGGCGAGGACGAACGACA-CTT 1093
|||||| |.||| ||| |||||.||||||.|..||||| |||
RBAM_032770__ 1073 ACGGCGCGGGCGCGCTTACTG----TAATGTCGAGGAAGGGCGACACCTT 1118
BSNT_05427___ 1094 ACCTGA--CGCTTGCACAGCGCGTG-TCAAAAGCACAGTCAAA---TAAA 1137
||| ||||||...||.|.||| .||||.| |.|.|| .||.
RBAM_032770__ 1119 ---TGACTCGCTTGAGGAGAGAGTGAACAAAGG----GGCGAAGGCGAAC 1161
BSNT_05427___ 1138 GCAGATTTGTTTGTCAGCATCCATGCAAACTC----GGCAACGCCTGCTG 1183
||.|||.|.||..|||||.|||||||.|||.| |..|||..|.| ||
RBAM_032770__ 1162 GCCGATATTTTCATCAGCGTCCATGCGAACGCAAATGATAACAGCAG-TG 1210
BSNT_05427___ 1184 CTTCCGGAACAGAAACTTACTATTATACGACGTATGAATCAGCCAATAGT 1233
|...|||.||.||.||.||.|||.|||..|||||..||||.||.||.|||
RBAM_032770__ 1211 CAAACGGTACGGAGACGTATTATGATAAAACGTACCAATCCGCAAACAGT 1260
BSNT_05427___ 1234 -------------AAAAGGTTGGCAACCGAGATTCAAAATCGTCTCTATG 1270
||||..|| ||.||||| |||.||.|||
RBAM_032770__ 1261 CTGAGGCTTGCCCAAAATATT--CAGCCGAG------AATGGTTTCT--- 1299
BSNT_05427___ 1271 TAGCGCTGAATACAACAAACCGTGGTGTGAAAATCGGCAACTTCC----- 1315
||.||....|||....||||..||||||| ||||.||
RBAM_032770__ 1300 --GCTCTCGGCACACGTGACCGCAGTGTGAA-------AACTGCCGGATT 1340
BSNT_05427___ 1316 --ATGTCATCAGGGAATCCAAAATGCCAAGCTGCCTTGTT-GAACTTGCG 1362
|.|||||.|.|.|.||.||||||||.|| ||.|||||| |||...|..
RBAM_032770__ 1341 TTACGTCATTAAGTATTCTAAAATGCCGAG-TGTCTTGTTAGAAACCGGT 1389
BSNT_05427___ 1363 TTTATCA---------------CCAATATCAACGATGCGGCTAAGCTCAA 1397
|||.||| ||||||| .|.||
RBAM_032770__ 1390 TTTGTCACAAGCCCGATTGATGCCAATAT----------------TTTAA 1423
BSNT_05427___ 1398 AAGCTCAATTTACAAAGAAAAAGGCGCTAAAGCGATTTACGACGG----- 1442
|| |||| |||.|||||||| |..||.|..||.|||
RBAM_032770__ 1424 AA---CAAT---CAACGAAAAAGG------ACAGACTCGCGGCGGGGATC 1461
BSNT_05427___ 1443 -----AATCGTTGCTTACTAT------TAA 1461
|..||||.|.|.|||| |||
RBAM_032770__ 1462 ACCCAAGGCGTTTCCTCCTATTTCCGATAA 1491
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