Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05420 and RBAM_032740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:53
# Commandline: needle
# -asequence dna-align/BSNT_05420___tuaC.1.9828.seq
# -bsequence dna-align/RBAM_032740___tuaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05420___tuaC-RBAM_032740___tuaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05420___tuaC-RBAM_032740___tuaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05420___tuaC
# 2: RBAM_032740___tuaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1310
# Identity: 786/1310 (60.0%)
# Similarity: 786/1310 (60.0%)
# Gaps: 247/1310 (18.9%)
# Score: 2101.0
#
#
#=======================================
BSNT_05420___ 1 TTGAAGGTTCTTTGGATTACCAGTGTTTATCCAAGTAGTCAAAAACCGGG 50
.|||||||..|.|||||.||.|||||.|||||.||.|||.|.||.|||||
RBAM_032740__ 1 ATGAAGGTATTGTGGATGACAAGTGTCTATCCGAGCAGTGAGAAGCCGGG 50
BSNT_05420___ 51 AGAAGGTGTTTTTCATGAAACACAGGTTCAGGCGTTGTATATGCAGGGCG 100
.|||||.|||||||||||.||.||||..||.|...||...|.||..||||
RBAM_032740__ 51 GGAAGGCGTTTTTCATGAGACGCAGGCCCAAGAACTGAGAAAGCTTGGCG 100
BSNT_05420___ 101 TTGATGTGACAGTCATATGTCCATTACCTGTGAA---CCCTGCTCCTCTG 147
..||..||||.|||||.|||||....|| ||| |.|.||.||..|.
RBAM_032740__ 101 CGGAGATGACCGTCATTTGTCCGCGGCC---GAAACTCGCCGCGCCATTC 147
BSNT_05420___ 148 AGGCTGTTGAAAAAAAAGTACCGCCAAACACG--AACAGTCCCGGAATAT 195
.||.||.|||||||.|.|||.||.|||| |.| |.||| .||||...||
RBAM_032740__ 148 CGGGTGCTGAAAAAGACGTATCGGCAAA-AGGATATCAG-GCCGGCGCAT 195
BSNT_05420___ 196 GAA-----GAAAGAAAAG-GTATC----------CCGGTTTA-CAGACCA 228
||| ||||| | ||.|| |||.|||| |||
RBAM_032740__ 196 GAATGGCGGAAAG----GCGTGTCCGTCCACCGGCCGTTTTATCAG---- 237
BSNT_05420___ 229 CCATATACAGCTCTGCCGGGACAGCTAAAATGGGCTCAGCCGCATCGCCG 278
||..|.||.||.|||||.||||||||.|||||||||
RBAM_032740__ 238 ---------GCGGTTCCCGGGCAGCTGAAATGGGCGCAGCCGCAT----- 273
BSNT_05420___ 279 GATCGCAAAGTCAGTATTGAGGA--CGAT------CGAGAAGTACA---- 316
||| ||.||.|.||| |.|| ||| ||.||.|
RBAM_032740__ 274 ------AAA---AGAATGGCGGAATCCATTCTTTCCGA-AATTAAAAATC 313
BSNT_05420___ 317 ---GCCTTGCGCCGAATCTTATCCATGCCCATTTCGCGATGCCATCCGGG 363
||||...|||..||||.||.||.||.||||||||.|||||.||.||.
RBAM_032740__ 314 ATGGCCTGAAGCCCGATCTGATTCACGCGCATTTCGCCATGCCGTCAGGC 363
BSNT_05420___ 364 GGTGCCGCTGCCGTTATTG-CACAGAGGCTGAAGG--TTCCTTATGTTCT 410
||.||.||.||| |||| ..||.|||||..||| ||||.|||||.||
RBAM_032740__ 364 GGAGCGGCCGCC---ATTGTGTCAAAGGCTTTAGGCATTCCGTATGTGCT 410
BSNT_05420___ 411 AACTTTGCACGGAAGCGATGTCAATATTTATCCTCATTACAGCAAAGGCG 460
.||.|||||.||.||.|||||||||.|.|||||.||||||||||||.|||
RBAM_032740__ 411 GACCTTGCATGGCAGTGATGTCAATGTCTATCCGCATTACAGCAAAAGCG 460
BSNT_05420___ 461 CTTTTCGAGCATTTGATA-TGGCTGTGCATGCTGCAGCTAAAGTTTTGGC 509
||..|||.|||||| |.| |.||.||||..|..|||||..|..|||..||
RBAM_032740__ 461 CTCATCGCGCATTT-ACATTTGCGGTGCGGGAAGCAGCCGATATTTACGC 509
BSNT_05420___ 510 TGTCAGCG--ATGCTTTGAAAGCCAAAACAAAAGAAA----TGACCGGTG 553
|||.|||| |..|| ||...||||||.|||| |.|.||..|
RBAM_032740__ 510 TGTGAGCGGCAGTCT------GCGGGAACAAATGAAAAAGCTTATCGAAG 553
BSNT_05420___ 554 CTGATTGCTCGGTGCTTCCTATCGGCGTCAACCTGGACAATTTTCAAAAA 603
|.||.|||.|.||||||||.||||||.|||..||.|||...||||.||||
RBAM_032740__ 554 CGGAGTGCACCGTGCTTCCGATCGGCATCACGCTTGACGCCTTTCGAAAA 603
BSNT_05420___ 604 AACTCCGCTTCAACACTTGAATTGA----GGGAGAAA----CTCGGCTTG 645
| |...|.|.|| ||| .|| |..||||| ||||||.|.
RBAM_032740__ 604 A-----GGAACGAGAC--GAA-AGAAGCCGTCAGAAAACGCCTCGGCCTT 645
BSNT_05420___ 646 CCGACAGACAAAAAATTGCTGACGTTCGTCGGTC--GCTTGGTGAAAG-G 692
||..|.||.||||||.||.|...||||.|.|| | |||| ||.|||| |
RBAM_032740__ 646 CCTCCGGATAAAAAACTGATCGTGTTCATAGG-CAGGCTT-GTCAAAGAG 693
BSNT_05420___ 693 AAAGG-GTGTAGCCGAGCTGGCTGAAGC-GGTCAGGTCGCTTGATGACAG 740
||||| ||.| .|||..|..|..|||| |.||| .||..|.|||||.||
RBAM_032740__ 694 AAAGGCGTTT--TCGACTTATCAAAAGCTGTTCA-ATCATTGGATGAAAG 740
BSNT_05420___ 741 CTACAGAGCTGTATTCATCGGCGATGGACCGGAGAAGCAGCATATCCGTC 790
.||...||||||.||..||||.||.||.|| .||.||||.|.|
RBAM_032740__ 741 ATATGAAGCTGTCTTTGTCGGTGACGGTCC-----CGCCGCATCTTC--- 782
BSNT_05420___ 791 AAATCGCCGGTGAAAAAGC-AATAT--TAATGGGGCAGGTCTCAAACCTT 837
||.|| |||||...|| .|||| |.|.||||||.||..|.|| |..
RBAM_032740__ 783 --ATTGC--GTGAAGCCGCTCATATCGTCACGGGGCAAGTGCCGAA-CGA 827
BSNT_05420___ 838 CAA-ATATCTGAATATCTGGCT-GCCTCTGATCTGTTTGTGCTCCCTTCG 885
||| .||...||.||||| ||| |||||.|||.|..|.|.|||.||.||.
RBAM_032740__ 828 CAAGGTACAGGACTATCT-GCTGGCCTCGGATGTAATGGCGCTGCCGTCC 876
BSNT_05420___ 886 TATTCA--GAAGGGATGCCGACTGTTGTCATTGAAGCGCTCGCCCTCAAG 933
|| || |||||.|||||||||||.||||||||.||||||||.||.|||
RBAM_032740__ 877 TA--CAGCGAAGGCATGCCGACTGTGGTCATTGAGGCGCTCGCTCTGAAG 924
BSNT_05420___ 934 GTTCCGGTGCTTTGTACGGCGGTCGGAGGGGTTCCGTCTTTATTCGGAAA 983
||.||||||.|.|||||.|..||||||||..|..|.|||||||||||.|
RBAM_032740__ 925 GTGCCGGTGATCTGTACCGATGTCGGAGGATTGGCTTCTTTATTCGGGA- 973
BSNT_05420___ 984 GCATGAACATC------TGCTGATCAAGCCCCGCTCGGCTTCAAGCATTA 1027
||||.| |||||||||||| |||.|||| |.|
RBAM_032740__ 974 -----AACACCGGGGGTTGCTGATCAAGC------CGGGTTCA--CCT-- 1008
BSNT_05420___ 1028 CAGAAGCTGTC--AAGGGAT------ATTTG--GAAGTCGGCACTTG--- 1064
.|||.||||.| ||..||| ||.|| ||||..|...||||
RBAM_032740__ 1009 GAGACGCTGGCAGAATCGATTCTGCAATATGACGAAGGAGAGGCTTGGAC 1058
BSNT_05420___ 1065 ---GCAAGAAGTCATTGCTGAAGAACTGTATCAAACGGT--GCTCGATGA 1109
|||| |..||.||.|||||.||||||||.|| ||.|| .|
RBAM_032740__ 1059 GCCGCAA------ACAGCCGAGGAACTTTATCAAACCGTCCGCACG--TA 1100
BSNT_05420___ 1110 TTATGACGCCTTTCAAAATGCCGGCAAGTTGCTGGATGTG-TATAAGGAT 1158
||.||||||....||||| ||..||...||||.|.|.| .|||..|||
RBAM_032740__ 1101 TTTTGACGCAAGCCAAAA---CGCGAAAACGCTGAAAGAGAAATACCGAT 1147
BSNT_05420___ 1159 --GTTGTCAAGAACAATTAA------------------------------ 1176
|| |||.||
RBAM_032740__ 1148 CCGT----------AATGAACCGGGCCGGGCAAGAGGAGAACCTTTCGAA 1187
BSNT_05420___ 1176 ---------- 1176
RBAM_032740__ 1188 AGAGGGATGA 1197
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