Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05412 and RBAM_032700

See Amino acid alignment / Visit BSNT_05412 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:53
# Commandline: needle
#    -asequence dna-align/BSNT_05412___tuaG.1.9828.seq
#    -bsequence dna-align/RBAM_032700___tuaG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05412___tuaG-RBAM_032700___tuaG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05412___tuaG-RBAM_032700___tuaG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05412___tuaG
# 2: RBAM_032700___tuaG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 793
# Identity:     568/793 (71.6%)
# Similarity:   568/793 (71.6%)
# Gaps:          68/793 ( 8.6%)
# Score: 1950.0
# 
#
#=======================================

BSNT_05412___      1 ATGACGA---GGCAAAAACCTTTAATCTCTGTCATTACGCCTTCCTATAA     47
                     |||||.|   ||   ||||||||..|.|||||||||||.||.||.|||||
RBAM_032700__      1 ATGACAAACTGG---AAACCTTTCGTATCTGTCATTACACCGTCTTATAA     47

BSNT_05412___     48 CGCGGAG-GAATATATCGAAAAAACCATTCAGTCCGTCTTAAATCA----     92
                     .|| .|| ||||||||||||.|.||.|||||||||||.|||.||||    
RBAM_032700__     48 TGC-AAGTGAATATATCGAAGACACGATTCAGTCCGTTTTACATCAAAGC     96

BSNT_05412___     93 GACGTTTTCCG-ACTGGGAAATGATTATTGCGGATGATTGCTCAACAGAT    141
                     .||     ||| |.||||||||||||||.|||||||||||.|||||.||.
RBAM_032700__     97 CAC-----CCGCATTGGGAAATGATTATCGCGGATGATTGTTCAACGGAC    141

BSNT_05412___    142 GGGACAAGAGACATTTTGAAGCGCTATGAAGAAGATGATGACCGGATCCA    191
                     ||.||.|||||.|||||...||..||||||.||.|.|||||.||||||| 
RBAM_032700__    142 GGAACGAGAGATATTTTACGGCAATATGAACAAAAGGATGAGCGGATCC-    190

BSNT_05412___    192 TGC------TATTTTTCTGAAAGAAAATC-AAGGTGCTGCAGCTGCACGA    234
                      ||      |||||     |.||||||.| ..||.||.||.|||||..||
RBAM_032700__    191 -GCGTCGTTTATTT-----AGAGAAAAACGGGGGAGCCGCGGCTGCCAGA    234

BSNT_05412___    235 AATGCGGCGCTCAGCAAAGCCGAAGGGCAC--TATGTCGCATTTTTGGAC    282
                     |||.|.||.||.|...|.||| |||||| |  ||||||||||||.|||||
RBAM_032700__    235 AATACAGCCCTTAAACATGCC-AAGGGC-CGTTATGTCGCATTTCTGGAC    282

BSNT_05412___    283 AGCGATGATGTATGGAAAGCAGAAAAGCTGGAAAAGCAGCTTGCCTTCAT    332
                     ||||||||...|||||||...||||||||..||||.||||||||.||.||
RBAM_032700__    283 AGCGATGACAGATGGAAAAAGGAAAAGCTTCAAAAACAGCTTGCGTTTAT    332

BSNT_05412___    333 GAGGAAGCA-------TCAGCATGCTTTCACATTTACGGCATACGAGC--    373
                     |     |||       .|.||  |||||..|||||||||..||| |||  
RBAM_032700__    333 G-----GCAGAGCGGTCCTGC--GCTTTTTCATTTACGGGCTAC-AGCGT    374

BSNT_05412___    374 ---TGATCAGCCAAGACGGCAAACCACTTC--ATAAAACCATTCATGCAC    418
                        .||.|||    |||||  |||..|..|  |.|||||.|||||.|  |
RBAM_032700__    375 CATGGAGCAG----GACGG--AACGCCGACGGACAAAACGATTCAAG--C    416

BSNT_05412___    419 CCATG--AGCCTTACATATGATGATGTATTAAAAAATACGATTATTGGTT    466
                     ||.||  |||||..||||||||||.|..||||||||.||||||||.||.|
RBAM_032700__    417 CCCTGAAAGCCTGTCATATGATGAAGCTTTAAAAAACACGATTATCGGAT    466

BSNT_05412___    467 GCTTGACGGTAATGATTGACAGGGAGCAAACCGGTGATATCCGTATGCCG    516
                     |.||.|||||.|||||||||||.|||||.||.||..|.||.|..|||||.
RBAM_032700__    467 GTTTAACGGTCATGATTGACAGAGAGCAGACGGGGCAGATTCAAATGCCT    516

BSNT_05412___    517 AATATTAGAACCCGTCAGGATTTGGCGACATGGTTATCCGTATTAAAGCG    566
                     .||||.|||||.||.||||||||.|||||||||.|.|||.|..|.||..|
RBAM_032700__    517 GATATCAGAACGCGGCAGGATTTAGCGACATGGCTTTCCCTGCTGAAAAG    566

BSNT_05412___    567 GGGATTCAAGGCATACGGACTGAACGAACCCCTCGCCGAATACCGCATCG    616
                     ||||||.|.|||.|||||.|||||.||...|||..|.||||||.|..|.|
RBAM_032700__    567 GGGATTTACGGCTTACGGCCTGAATGAGTGCCTTTCAGAATACAGGCTTG    616

BSNT_05412___    617 TTGAAACATCGATTTCCAGCAACAAATGGAAGGCTGCGAAAAAAACGTGG    666
                     |..|.|..||||||||.||||||||.|||||.||.||.||||||||||||
RBAM_032700__    617 TGCAGAATTCGATTTCAAGCAACAAGTGGAAAGCCGCAAAAAAAACGTGG    666

BSNT_05412___    667 TTTGTCTACAGGGAGATCGAACGGCTTCATTTTATGAAAGCAACATGGTG    716
                     |||||.||.||.||.||.||.||.||.||||||||.||.||..|.|||||
RBAM_032700__    667 TTTGTTTATAGAGAAATTGAGCGCCTGCATTTTATCAAGGCTTCGTGGTG    716

BSNT_05412___    717 TTTTGTTCAATATGCAAAAAACGCGGTGAAAAAAAGATTATAG    759
                     ||||.|.||||||||||||||||||||....||||||.|.|||
RBAM_032700__    717 TTTTATGCAATATGCAAAAAACGCGGTCTTGAAAAGACTGTAG    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05412 and RBAM_032700

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
