Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05397 and RBAM_032670
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05397___yvhJ.1.9828.seq
# -bsequence dna-align/RBAM_032670___yvhJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05397___yvhJ-RBAM_032670___yvhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05397___yvhJ-RBAM_032670___yvhJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05397___yvhJ
# 2: RBAM_032670___yvhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1282
# Identity: 677/1282 (52.8%)
# Similarity: 677/1282 (52.8%)
# Gaps: 350/1282 (27.3%)
# Score: 1917.0
#
#
#=======================================
BSNT_05397___ 1 ATGCCAGAACGAGTTAAG-GTTCGTGT---AAAGAAAAAAAAAAATAAAC 46
|||.|.|||||.| |||| ||.||||| |||||||||.||||..||||
RBAM_032670__ 1 ATGGCTGAACGTG-TAAGAGTGCGTGTTCGAAAGAAAAAGAAAAGCAAAC 49
BSNT_05397___ 47 GAAAAATTATTTTAAAGCGTATATTATTGCTCTTTTTCCT-ATTTTCTAT 95
||||.||.||.||.||.||.||.||..||||..||..||| .||||.| |
RBAM_032670__ 50 GAAAGATCATATTCAAACGGATTTTGCTGCTGCTTACCCTCGTTTTGT-T 98
BSNT_05397___ 96 AGTATTC-GCAGGAATAATT----GGATATAAAGTATATAAAACGCTTCA 140
||| |.| ||.|| .|| |||||.||||||||.|||||| .|||
RBAM_032670__ 99 AGT-TGCTGCCGG----GTTTGGCGGATACAAAGTATACAAAACG-ATCA 142
BSNT_05397___ 141 A-GCAGCTGATAGTTCCTATAAAGAATTAGAT---------CGTGGTGAA 180
| ||.||.||||.|.|.||| ||| ||.||.||.
RBAM_032670__ 143 ATGCGGCAGATAATGCATAT---------GATGCCCTTTCCCGCGGAGAC 183
BSNT_05397___ 181 AAGTCGAAATTACGCAAAGAAGTAGTTGATCTTAAGAAAAAACAACCTTT 230
||.||.|||.|.||..|..||||..|.|||.|.||||||| ||||.||
RBAM_032670__ 184 AAATCAAAACTTCGGGATAAAGTCATCGATATGAAGAAAA---AACCGTT 230
BSNT_05397___ 231 TTCTGTAC-TTTTGTT----AGGAGTCGAAGACTATGCAACAGGCGGAAA 275
.|| | ||||||| .||| |||||.|.|||||.|||.|||||||
RBAM_032670__ 231 CTC----CATTTTGTTTATGGGGA-TCGAAAATTATGCCACAAGCGGAAA 275
BSNT_05397___ 276 AGGAGGAAGAACCGATTCTATTATTGTCGCTACTATCAATCCTAAACAAA 325
|||.|||.||.|.||.|||.|||||||||.|||..|..||||.|.|.|.|
RBAM_032670__ 276 AGGCGGACGATCAGACTCTCTTATTGTCGTTACCCTTGATCCGAGAAATA 325
BSNT_05397___ 326 AGACCATGAAGTTACTGAGCATTCCTCGAGATACAAGAG------TTGAA 369
|.||.|||||..|.|||||.|||||.||.|||||..|.| |||
RBAM_032670__ 326 AAACAATGAAAATGCTGAGTATTCCGCGTGATACGCGGGTGACGCTTG-- 373
BSNT_05397___ 370 ATATCTGGTGATACTTCTGGGACAAAAACGAGAATTAATTCTGCATATGG 419
|.||.|||||..|.||.|.||||.|.|.|||.|||.|.||.|.||.
RBAM_032670__ 374 ----CCGGCGATACAACCGGTAAAAAATCAAAAATCAATGCGGCTTTTGC 419
BSNT_05397___ 420 GAAAGGCGGAGCTCAAACAACTGTTGAAACGGTTGAAAAGCTCTTAAATA 469
.||||||||.||..|...|||.||...|||.||.|||.|..|.|||...|
RBAM_032670__ 420 TAAAGGCGGGGCGGATGAAACCGTCTCAACCGTCGAAGACTTATTAGGCA 469
BSNT_05397___ 470 TACCAATTGATTACTATGCTACTGTGGATTTTAAAGGCTTCAAAAAAACA 519
||||.||||||.|.||||..|||||.||||||||.|||||.||..|....
RBAM_032670__ 470 TACCGATTGATAAGTATGTCACTGTCGATTTTAACGGCTTTAAGGATGTT 519
BSNT_05397___ 520 ATTGATGAAGTTGGTGGAGTTGATGTTGAGGTCCCCTTTGATTTTAATGA 569
|||||||||||.||.|||||..||||..|.||.||.|||||.||..|.||
RBAM_032670__ 520 ATTGATGAAGTCGGCGGAGTCAATGTAAAAGTGCCTTTTGACTTCGACGA 569
BSNT_05397___ 570 GAAAAGTGATACATCA--AAATCTAAAAAA---TTCTATTTTCAA-AAAG 613
||..|||| ||.||| ||| ||.||| .|||| .||||| ||||
RBAM_032670__ 570 GATGAGTG--ACGTCAGTAAA---AAGAAACGGATCTA-CTTCAAGAAAG 613
BSNT_05397___ 614 GGAATATGCATCTAAATGGGGAAGAGGCTCTTGCCTATGCACGGATGAGA 663
|.||.||||||.|.||.||.||..|||||||.||.||.|||||.||||||
RBAM_032670__ 614 GAAACATGCATTTGAACGGTGAGCAGGCTCTGGCTTACGCACGCATGAGA 663
BSNT_05397___ 664 AAACAAGATCCACGGGGTGACTTCGGGCGTAATGATAGACAAAAACAAAT 713
||.||.|||..|||.||.||||||||.||||||||..|.|||||.|||||
RBAM_032670__ 664 AAGCAGGATAAACGCGGAGACTTCGGCCGTAATGACCGCCAAAAGCAAAT 713
BSNT_05397___ 714 TTTGATGGCCATGTTAGATCAAGTCTCAAAACCTTCTAATCTTGCAAAAA 763
..|.|..||..||.|.||.|||.|.||.||..||...||..||||.||||
RBAM_032670__ 714 CCTAAATGCACTGATCGACCAAATGTCTAAGGCTGGAAACATTGCTAAAA 763
BSNT_05397___ 764 TTGATACCCTAGCAGATCAAGTAAGTGATAACATAACAACAAATTTAAGG 813
|.||||...|.||.||...||.|||..||||..||..|||.|||.|..|.
RBAM_032670__ 764 TCGATAAAATCGCTGAAACAGCAAGCAATAATGTACAAACGAATATCCGA 813
BSNT_05397___ 814 ATTACCCAAGTCCTAGCACTTCAACAAATTTTTAGCGGTTTTA-----AA 858
||.||..|||..||.||.|||||.||.||||..|.|||.|||| ||
RBAM_032670__ 814 ATCACTGAAGGACTCGCCCTTCAGCAGATTTACAACGGCTTTACCAGCAA 863
BSNT_05397___ 859 GGTAACGATGTTGAAACATTAACTCTAAAAGGCTCAGATTTATATAT--- 905
||.|| ||||.|||.|.||..|||.|||.||||||||||||.|
RBAM_032670__ 864 ---AAAGA--TTGATACACTGACCATAACAGGATCAGATTTATATTTAGG 908
BSNT_05397___ 906 ------CGGAA----------------ATAAGTACTTCTTT-CAACCTGA 932
||||| | |.||| ||.||| ||.||.||
RBAM_032670__ 909 CGGCGGCGGAACCGCGTCTACGGGCGGA-ACGTA-TTATTTCCAGCCCGA 956
BSNT_05397___ 933 T--GATGAA----GAATTAACAAAAGTTCAAGAAGAACTTTATAACTTTT 976
| ||..|| || ||||||.|...|.|||.|..|.||
RBAM_032670__ 957 TCCGACCAATCTCGA------AAAAGTACGGCAGGAATTGCAGAA----- 995
BSNT_05397___ 977 TGTAC-CCTGATAAATAA-------------------------------- 993
|| |||| .||.|
RBAM_032670__ 996 ---ACACCTG---GATTACCCGTCCGGAAGCAGCACGGCGTCCGATCCTG 1039
BSNT_05397___ 993 -------------------------------------------------- 993
RBAM_032670__ 1040 CTTCTGACAGCACCGGAACGGACAGTACGACTGATTCGACTTCTGACAGC 1089
BSNT_05397___ 993 -------------------------------------------------- 993
RBAM_032670__ 1090 ACAGGAACAGGCGGTACGGCTGATTCGACTTCCGGCAGCGCAGGAACAAG 1139
BSNT_05397___ 993 -------------------------------------------------- 993
RBAM_032670__ 1140 CGGTACCACTGATTCAACCAACGGTACTGCCGGTGCAAACGGTACGGACA 1189
BSNT_05397___ 993 -------------------------------- 993
RBAM_032670__ 1190 GCACACAGTCCGGCGGCACAACAGGCTATTAA 1221
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