Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05389 and RBAM_032600
See
Amino acid alignment /
Visit
BSNT_05389 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:52
# Commandline: needle
# -asequence dna-align/BSNT_05389___comFC.1.9828.seq
# -bsequence dna-align/RBAM_032600___comFC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05389___comFC-RBAM_032600___comFC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05389___comFC-RBAM_032600___comFC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05389___comFC
# 2: RBAM_032600___comFC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 800
# Identity: 458/800 (57.2%)
# Similarity: 458/800 (57.2%)
# Gaps: 199/800 (24.9%)
# Score: 1299.0
#
#
#=======================================
BSNT_05389___ 1 ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATG 50
||.||
RBAM_032600__ 1 ---------------------------------------------TTGTG 5
BSNT_05389___ 51 TGATTC-GCAATTTTCTCAAG---ATGTTACATGGAGAGCCCTTTTTTTA 96
|||.|| .||||| ||||| || |.||.||||||.|.||.||||..
RBAM_032600__ 6 TGACTCACCAATT---TCAAGTTCAT-TGACTTGGAGATCTCTGTTTTCT 51
BSNT_05389___ 97 CTAAAGCCTGATGAAAAGGTTTG----TTATTCTTGCAGAAGCAAATTAA 142
||...|||.||..||.||.|.|| .|| |||||.||||||||..
RBAM_032600__ 52 CTGGCGCCCGAGCAAGAGATATGCAGCATA----TGCAGCAGCAAATTCG 97
BSNT_05389___ 143 AGAAAATCACAGGACATATCTGCCCCC----------TGTGCGGCAGACC 182
|.|||||...||| |||| |.|||||.||.||
RBAM_032600__ 98 AAAAAATTGAAGG----------CCCCGTATGCAGTATATGCGGGAGGCC 137
BSNT_05389___ 183 -------TCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGA 225
|||| |||....||||...|||||.|.||...|| ||
RBAM_032600__ 138 TCAGGAGTCAA-------ATGAAAAATGCGCTGATTGTGCGGCCCGG-GA 179
BSNT_05389___ 226 A-CAA----GGATCAGAGACAGTTTGCTATTGCGTCAAAACCGTTCAGTT 270
| ||| |||..||.| |..||||| ||||.|||||||||||.||.
RBAM_032600__ 180 ATCAAAAACGGAAAAGCG-CTTTTTGC---TGCGGCAAAACCGTTCGGTA 225
BSNT_05389___ 271 TACACATATAATGATATGATGAAAGAAACGCTC----TCCCGTTTTAAAT 316
||....|||||||||..||||||.|| ||| .||||||||||||
RBAM_032600__ 226 TATTTGTATAATGATGCGATGAAGGA----CTCATTGGCCCGTTTTAAAT 271
BSNT_05389___ 317 TTAGAGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCA 366
|.||.||.|||||..|||||||..|.||||||.||.||||.|||.||.|.
RBAM_032600__ 272 TCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACGTGACTTTGCTGCC 321
BSNT_05389___ 367 ACCTTTTCTAA---GGTTTACC---CCGATAAGCATTTTGTTCTTGTACC 410
..||| ||| ||..||.| |..|||..|| |..|||..|.||
RBAM_032600__ 322 GGCTT---TAAAGCGGCATATCCATCAAATACACA---TACTCTCATCCC 365
BSNT_05389___ 411 TATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCAC 460
|||||||||||||...||||||...|..||.||||||||.||.||..|..
RBAM_032600__ 366 TATTCCGCTGAGCGGCGAACGGCTGGCGGAACGCGGATTCAATCAATCCG 415
BSNT_05389___ 461 AGCTCTTGG----------CAGAATGTTTAGACCGGCCTTCCCACCATCC 500
||||..||| |.|||| |.|||.|.||.|| ||
RBAM_032600__ 416 AGCTGCTGGCCTCTCTGCTCGGAAT-----GCCCGTCATTTCC-----CC 455
BSNT_05389___ 501 CCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAG-AAAACAGAA 549
||||||.||.|||||.||.||.|||||.||.|| |||.|| ||||||||.
RBAM_032600__ 456 CCTCATCCGACTGAACAACGAAAAACAATCCAA-AAAGAGCAAAACAGAC 504
BSNT_05389___ 550 CGCCTG-CTGTCAGAGCGCATTTTTGATACAAAAAATAATTCAGCAG--- 595
.|.||| ||| |||| ||||||...||||||||
RBAM_032600__ 505 AGGCTGTCTG-CAGA---------------AAAAAAGTTTTCAGCAGCCG 538
BSNT_05389___ 596 ------------AAGGTATGAATATCATTTTAATAGACGATCTTTATACA 633
.|||||||||..|||||||||||||.|||.|||||||.
RBAM_032600__ 539 AAAACTCCGCCACAGGTATGAACGTCATTTTAATAGATGATATTTATACG 588
BSNT_05389___ 634 ACAGGCGCCACCTTGCACTTCGC--AGC--CCG-----CTGCTTATTAGA 674
||.||||||| ||||||.| ||| ||| ||||| ||
RBAM_032600__ 589 ACGGGCGCCA-----CACTTCACCAAGCCGCCGAAGTCCTGCT-----GA 628
BSNT_05389___ 675 -AAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGCTAA 723
|...||.|||||..|.||.||.||.||||||||.||.|||||.||||||
RBAM_032600__ 629 CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA 678
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.