Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05384 and RBAM_032550

See Amino acid alignment / Visit BSNT_05384 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05384___flgL.1.9828.seq
#    -bsequence dna-align/RBAM_032550___flgL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05384___flgL-RBAM_032550___flgL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05384___flgL-RBAM_032550___flgL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05384___flgL
# 2: RBAM_032550___flgL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 966
# Identity:     611/966 (63.3%)
# Similarity:   611/966 (63.3%)
# Gaps:         117/966 (12.1%)
# Score: 1769.0
# 
#
#=======================================

BSNT_05384___      1 ATGAGAGTAACACAAGGCATGATACAGC--AAAACTCACTGAGATATATC     48
                     |||||||||||.|||||.|||||  .||  ||||.||.||..|||.||||
RBAM_032550__      1 ATGAGAGTAACTCAAGGGATGAT--CGCAAAAAATTCTCTTCGATTTATC     48

BSNT_05384___     49 GGTTCGAGCTACTCGAAGCTGGATAAACTCCAGTCGCAGATTTCTTCAGG     98
                     ||.||.||.||....|||||.|||...||.||...|||..|.|||.|.||
RBAM_032550__     49 GGCTCAAGTTATGACAAGCTCGATCGGCTTCAACAGCAAGTGTCTACGGG     98

BSNT_05384___     99 GAAAAAAATCTCAAAAGCTTCCGACGATCCTGTAGTAGCAATGA----AA    144
                     ||||||||||.|.||||||||.||.|||||.||.||.|||||||    ||
RBAM_032550__     99 GAAAAAAATCACGAAAGCTTCAGATGATCCGGTCGTTGCAATGAAGGGAA    148

BSNT_05384___    145 AGCTTAAAGTATAATACGCAACTGTCTCAAGTGCAGCAGTACAAAAGCAA    194
                     .||    ||||...|||.|||||..|.||.||..|.|||||..|..|.||
RBAM_032550__    149 TGC----AGTACCGTACTCAACTTGCGCAGGTAAACCAGTATCAGCGGAA    194

BSNT_05384___    195 TGCCTCTCAAGCCTTTACCTGGCTCGAAAACACAGAAACAAACATTA---    241
                     ||..||.||||.||||||.|||||.||||||.|.|||.|||.|.|.|   
RBAM_032550__    195 TGTTTCGCAAGGCTTTACATGGCTGGAAAACTCGGAATCAAGCGTAAACT    244

BSNT_05384___    242 CAGAAGGAATTGACATCTTGTCAAAGGTCAGAGAATTAGCGGTTGAAGCT    291
                     |.||   ||..||.||..||..|||..||.|.||.||...||||.|.||.
RBAM_032550__    245 CGGA---AACGGATATTATGGGAAAAATCCGGGACTTGATGGTTCAGGCG    291

BSNT_05384___    292 CAAAATGATACAAACGGCGAGGCGGAGCGGCAAGCGATTGGCGTAGAAGT    341
                     .|||.||||.|.||.||.||..|.||...|.||||.||.||...||||.|
RBAM_032550__    292 AAAAGTGATTCGAATGGTGAAACAGAATTGAAAGCAATCGGTACAGAAAT    341

BSNT_05384___    342 AAAGCAGTTAAAGGAACAGCT--TTTAAATATTGCGAATACACAAGTGAA    389
                     ....|||.|.||..|.|||||  |||  .|.|.||||||||.||.||.||
RBAM_032550__    342 CGGCCAGCTGAAAAAGCAGCTCGTTT--CTGTCGCGAATACTCAGGTAAA    389

BSNT_05384___    390 CGGCAGATATATCTTTAATGGCACAAATTCAGATAAGCCTCCGGTTACAG    439
                     |||..|.|||.|.|||||.||.||||||||||||...||.|||.|.||.|
RBAM_032550__    390 CGGACGTTATCTGTTTAACGGAACAAATTCAGATGTCCCGCCGATCACTG    439

BSNT_05384___    440 ATAACGGAGACGGAACTTATAC-------------AATTTCTGATACAGC    476
                     |.||.|..|||||.||.|||||             ||||    ||||||.
RBAM_032550__    440 AAAATGCCGACGGCACATATACGTACAACTATGAGAATT----ATACAGG    485

BSNT_05384___    477 TGATGTCGTA-GTCAATATATCAAATAATATGTCAT--------------    511
                     ||.| |||.| ||.|  |.|||||         |||              
RBAM_032550__    486 TGCT-TCGGATGTTA--ACATCAA---------CATCTCGAACGGAGCAG    523

BSNT_05384___    512 ---TGAAAGTGAATTCAGATCCAAAGTCAGCTTTTGGAG-----GCACTT    553
                        |||||||||||||.||||||||.||||||||.||||     ||||  
RBAM_032550__    524 TGCTGAAAGTGAATTCTGATCCAAACTCAGCTTTCGGAGGCGTCGCAC--    571

BSNT_05384___    554 CTGAAAGCGGGCAAAATGTATTTGAAATGCTTGATTCTTTTGAGAAAGCA    603
                        |||..||..|.|||||.||||||.|.|||.|.||.||.|   |||| 
RBAM_032550__    572 ---AAAATGGAGATAATGTTTTTGAATTTCTTAACTCCTTAG---AAGC-    614

BSNT_05384___    604 CTAAATTCT---------GGTTCGCT---------AGATGGCATGGA-CA    634
                          ||||         ||..||||         |||| .||  || ||
RBAM_032550__    615 -----TTCTTTAAGCAAAGGCACGCTGTCCGAAGCAGAT-TCA--GATCA    656

BSNT_05384___    635 ATGTTTTAGATGATATTGATCATTTTTCTGACGGCATGAGTGCTGAACGA    684
                     | |||.|....||||||||...||||.||||....||||.|||||||..|
RBAM_032550__    657 A-GTTCTGTCAGATATTGACGGTTTTACTGATAAAATGAATGCTGAAAAA    705

BSNT_05384___    685 TCTGATCTTGGAGCGAG-ATATAATCGTCTTGAACTGGTTAATACGAGAC    733
                     ||..||.|.||.||..| |.| ||.||..|.|||||..||.|.||.|||.
RBAM_032550__    706 TCCAATATCGGCGCACGCACA-AACCGGTTGGAACTCATTCAGACAAGAT    754

BSNT_05384___    734 TGTCAGCGCAAGAAGAAACAGCTACCAAAGTGTTATCAGACAATGAAGAT    783
                     ||..|.|.||||..|.|||.|||...|||||.||.||.||.|||||||||
RBAM_032550__    755 TGGAATCACAAGCGGCAACCGCTGAAAAAGTATTGTCCGATAATGAAGAT    804

BSNT_05384___    784 GTAGAACTGGAAGAGGTAATAACTGA--ATTTATTGCGCAGCAAAGTGTG    831
                     ||||||.|||||||.|||||...|||  ||||||  |.||.||.|..||.
RBAM_032550__    805 GTAGAAATGGAAGATGTAATTGTTGATTATTTAT--CTCAACAGACGGTT    852

BSNT_05384___    832 CACAGGGCTACTCTGGCCGTTAATGCGCAAATTGTTCAGCCTACATTGAT    881
                     ||.||.||..|.|||.|.||.||||||.|.||..|||||||..||.||||
RBAM_032550__    853 CATAGAGCAGCGCTGTCAGTGAATGCGAATATCATTCAGCCGTCACTGAT    902

BSNT_05384___    882 TGACTTTTTAAAGTAA    897
                     |||||||.|.||.|||
RBAM_032550__    903 TGACTTTCTGAAATAA    918


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05384 and RBAM_032550

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
