Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05381 and RBAM_032520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05381___csrA.1.9828.seq
# -bsequence dna-align/RBAM_032520___csrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05381___csrA-RBAM_032520___csrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05381___csrA-RBAM_032520___csrA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05381___csrA
# 2: RBAM_032520___csrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 233
# Identity: 164/233 (70.4%)
# Similarity: 164/233 (70.4%)
# Gaps: 16/233 ( 6.9%)
# Score: 562.0
#
#
#=======================================
BSNT_05381___ 1 ATGCTAGTTTTATCGCGGAAAATAAACGAAGCGATTCAAATAGGTGCTGA 50
|||||||||.|.||..|.|||.|.||.||..|.|||||.||.||..|.||
RBAM_032520__ 1 ATGCTAGTTCTCTCAAGAAAAGTGAATGAGTCCATTCAGATCGGGCCGGA 50
BSNT_05381___ 51 TATTGAAGTGAAAGTGATTGCGGTTGAGGGGGATCAAGTGAAGCTTGGAA 100
|||||||.|.||.|||||.||..|.||.||.||.|||||||||||.||||
RBAM_032520__ 51 TATTGAAATAAAGGTGATCGCCATCGAAGGAGAACAAGTGAAGCTGGGAA 100
BSNT_05381___ 101 TTGACGCCCCAAAGCATATTGATATTCATAGGAAAGAAATTTATTTGACC 150
||||.||.||..||||..|.||||||||.|||||||||||.||.|||.|.
RBAM_032520__ 101 TTGAAGCGCCTCAGCACGTAGATATTCACAGGAAAGAAATCTACTTGTCG 150
BSNT_05381___ 151 ATTCAGGAAGAAAATAACCGTGCGGCAGCGTT--ATCCAGCGATGTGAT- 197
||.|.||||||.||.|||.|.||.|.|.|.|| ||.| ||||
RBAM_032520__ 151 ATCCTGGAAGAGAACAACAGAGCTGTATCTTTTAATAC-------TGATT 193
BSNT_05381___ 198 -----CTCCACATTATCCTCACAAAAAAAGTGA 225
||..|| .||||||||||||||||||||
RBAM_032520__ 194 TATTACTTAAC-CTATCCTCACAAAAAAAGTGA 225
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