Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05377 and RBAM_032500
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:51
# Commandline: needle
# -asequence dna-align/BSNT_05377___fliD.1.9828.seq
# -bsequence dna-align/RBAM_032500___fliD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05377___fliD-RBAM_032500___fliD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05377___fliD-RBAM_032500___fliD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05377___fliD
# 2: RBAM_032500___fliD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1723
# Identity: 995/1723 (57.7%)
# Similarity: 995/1723 (57.7%)
# Gaps: 401/1723 (23.3%)
# Score: 2421.5
#
#
#=======================================
BSNT_05377___ 1 ATGGTCACAAGAATAACAGGTCTGGCGTCAGGAATGGATATAGATGATAT 50
||||||||||||||.|||||.||....||.||..|.|||.|||||..|.|
RBAM_032500__ 1 ATGGTCACAAGAATCACAGGCCTTAATTCCGGTCTTGATGTAGATTCTCT 50
BSNT_05377___ 51 TGTATCAAAGCTGATGCAGACAGAAAGAGC-CCCGCTTGATAAGCTGAAG 99
.||...|||..|||||.|..|.|||| ||| .||||||.||||..|.||.
RBAM_032500__ 51 GGTGAAAAAAATGATGGATGCCGAAA-AGCAGCCGCTTAATAAATTAAAC 99
BSNT_05377___ 100 CAAAAAAAGCAGACTCTTGAATGGCAGCGTGACAGC-TATCGTGAAGTCA 148
||..||||||||||.|||||||||.||||.|| .|| |||||.|||||.|
RBAM_032500__ 100 CAGCAAAAGCAGACGCTTGAATGGAAGCGCGA-TGCTTATCGGGAAGTGA 148
BSNT_05377___ 149 ATACAAAAATAAAAGAATTG----CAAG-ATTATATG---TCTAAAAATA 190
||||..| .|||| ||.| |||.||.| |.|||.||||
RBAM_032500__ 149 ATACCCA--------GATTGCCGACATGTATTCTACGACATTTAATAATA 190
BSNT_05377___ 191 CGTTGACATATCCTAGCAC------GTATCAGAGCAAAACTGTGACAAGC 234
.|.|| ||.|| ||| |.|| |..|||||.||.|||||.
RBAM_032500__ 191 TGCTG--ATGTC----CACAAACTGGAAT---AAAAAAACAGTAACAAGT 231
BSNT_05377___ 235 TCTAATGAGT-CTGTGTTAACTGCTACAGGAAG-CGCAAGTGC--ACCAA 280
|| .||.| |.||||.|.| || ||..| ||..||||| |.||.
RBAM_032500__ 232 TC---GGATTCCAGTGTCAGC-GC----GGTGGCCGTCAGTGCTGAGCAG 273
BSNT_05377___ 281 ACTCTTCTTCTAC-----TGT-TGAAGTGGCGAGCTTGGCAACCGCAGCA 324
|.|.| |||.|| ||| ||.|..| .||| ||||.||..|..|.
RBAM_032500__ 274 AATAT--TTCAACGAGTATGTCTGTACAG--CAGC-TGGCCACTTCGACG 318
BSNT_05377___ 325 ACGTATAA---------GGCAAACAATTATACGGGATACA-CTCA-AGGC 363
||.||||| |||.|.|||||..|| |.|| .||| ||.|
RBAM_032500__ 319 ACATATAAATCATCAGGGGCCATCAATTTCAC----TTCAGGTCAGAGCC 364
BSNT_05377___ 364 GATTACAATTTGGCATTTAACGTTGTTGC---GCCTGGCGAAACAACGGC 410
.| ||| |||..|||.|| |||..| .||.||.|||||.|.|.|
RBAM_032500__ 365 AA--ACA--TTGAAATTCAA---TGTCACAAATCCGGGTGAAACGAAGCC 407
BSNT_05377___ 411 AA-------AAACAGTGAACATTAGTGTGACGAGCG------CCGATACG 447
.| |||| ||.||||.|| ||||||||
RBAM_032500__ 408 GACTGAGGTAAAC-------------GTCACGATCGCCGCAACCGATACG 444
BSNT_05377___ 448 ATTGATAATGTGATTTCTAAACTTAACAGCTCAGATCTAGGAGTATCAGC 497
|||||..||||.|||||.|||||.||||||||.|.|||.|||||..|.||
RBAM_032500__ 445 ATTGACGATGTCATTTCCAAACTGAACAGCTCGGGTCTCGGAGTGACGGC 494
BSNT_05377___ 498 TTTTAAAGATAAAATTTGGAATGGTACAGAGTACGTAGAAACAATTGCGT 547
|||.|||||.|||||||..||.||.||.||.||.||.||.||.|||||||
RBAM_032500__ 495 TTTAAAAGAGAAAATTTCCAACGGCACGGATTATGTGGACACGATTGCGT 544
BSNT_05377___ 548 TTTCTTCTAAAGCAACAGGTGCAGGGGGCAG----TATACAGGCAGCA-- 591
|..||||.||...||| |||||.|| ||..|...|||||
RBAM_032500__ 545 TCACTTCCAATAAAAC-------GGGGGAAGGATTTACCCTTTCAGCAGG 587
BSNT_05377___ 592 ----GACTCTGCTAC----AGCTGACTTTATGTCCGGTCAGCTTGGTTTT 633
||| ||.|| || ||||.||...|.||||||.||||||
RBAM_032500__ 588 TGATGAC---GCAACCAAAAG----CTTTCTGAAAGATCAGCTCGGTTTT 630
BSNT_05377___ 634 TCTTTGGATGCTG----ATAATAAGCTCACTGCTTACAA---AGAAGGCA 676
.|..|.||||.|| | |||.|.||.||.|| ||| .|||||.|
RBAM_032500__ 631 GCCGTTGATGATGCAACA-AATGAACTGACGGC---CAATGCCGAAGGGA 676
BSNT_05377___ 677 CAAATGCCAAAGTTACAATCAACGGCTTTGAAATG-GAGAAGCTGACAAA 725
.|||.||.||..||||..|||||||..|||||||| .|.||.| |.||||
RBAM_032500__ 677 AAAACGCGAAGTTTACGTTCAACGGGCTTGAAATGACAAAAAC-GTCAAA 725
BSNT_05377___ 726 CAATTTCACGGTGAATGGTGTTACTTAC-TCGATTAAAAATACA-ACTG- 772
.||.||.|||.|.||.|| | || ||||||| .|||
RBAM_032500__ 726 TAACTTTACGATCAACGG---------CATC------AAATACACGCTGA 760
BSNT_05377___ 773 -CAGC------CACAGGCC-------CTGTTAC----CACATCTGTTTCT 804
|||| .|||| | |.||||| .|||.| .|.
RBAM_032500__ 761 ACAGCGTGACGGACAG--CAATAAAACGGTTACGATTAACAGC----ACG 804
BSNT_05377___ 805 ACTGATGTTGACGGAATTTATAACCAAATCAAAGAGTTTGTAGATAAATA 854
||||||...|||||.||||.|.||.|.||.|||||.||.||.||||||||
RBAM_032500__ 805 ACTGATACGGACGGCATTTTTGACAACATTAAAGATTTCGTTGATAAATA 854
BSNT_05377___ 855 CAA----TGAAATGGTTGACAGCCTG--AATGAAAAGCTGAAAGAAGAAA 898
||| |.|| ||.|.|| || ||.||.|||.|.|.||||..||
RBAM_032500__ 855 CAATACGTTAA----TTAAAAG--TGCAAACGAGAAGGTAACAGAATCAA 898
BSNT_05377___ 899 AATACCGAGACTATACTCCGTTGACAAGTGAACAAAAAGAAGCCATGTCC 948
|||||||.||.||||..|||.|.||...||||||||.||||||.|||.||
RBAM_032500__ 899 AATACCGCGATTATAAGCCGCTAACCGATGAACAAAGAGAAGCGATGACC 948
BSNT_05377___ 949 GATAAAGAGGTAGAGCTCTGGGAGGAGAAGGCGAAAAGCGGATTGCTTAG 998
|||||..||.|.||||..|||||||..|||||.||||||||.||
RBAM_032500__ 949 GATAAGCAGATTGAGCAGTGGGAGGCAAAGGCCAAAAGCGGGTT------ 992
BSNT_05377___ 999 AAATGATT--CTAGCATCAGCAC-CGGCACAAACC----------AAATG 1035
||| ..|||..|||||| |.|||.|| | |||||
RBAM_032500__ 993 -----ATTACGGAGCGACAGCACGCTGCAGAA--CGGTTTGGCTGAAATG 1035
BSNT_05377___ 1036 CGGACTGACTTTTATACTCAA--GTTAATGCG---GATGGGAAAACCTAT 1080
|||..||| |.|.||||||| |||| || ||.||.||||..|||
RBAM_032500__ 1036 CGGCTTGA--TCTGTACTCAACGGTTA---CGATTGACGGAAAAAAATAT 1080
BSNT_05377___ 1081 CA-ATTGACAGAATTCGGCATAACAACCTCAAGTGCTTACCAAATGCGG- 1128
|| .||| |.||.|||||.|||...||.||.||| .|||.||
RBAM_032500__ 1081 CAGCTTG-CCGATTTCGGTATAGAGACGTCTAGT--------TATGAGGA 1121
BSNT_05377___ 1129 ----GGGCA-TTTAGA--------GATTA---ATGAAGACAAACTGAAAG 1162
||..| |||.|| .|||| |.||||..|||||||||.
RBAM_032500__ 1122 TCAAGGAAAGTTTGGAAAGCTTGTCATTAAAGACGAAGCGAAACTGAAAC 1171
BSNT_05377___ 1163 CCAAAAT--ACAAGAAGATCC-----------GCAAAGCGTTGCCGCTTT 1199
..||||| .|.|||| || ||.|||| || |||
RBAM_032500__ 1172 AGAAAATTACCGAGAA---CCCCTCTCTCGTGGCTAAGC--TG----TTT 1212
BSNT_05377___ 1200 ATT--------TACAAGTGGGTCGA--ACAG-CAGCGCCTATAGTGATAA 1238
|.| ||||||| .||| |||| ||| ||..|..|.|||
RBAM_032500__ 1213 AATGCAGACAGTACAAGT---ACGATTACAGACAG---CTCAACCGGTAA 1256
BSNT_05377___ 1239 AGGGATTATGAAACGCATCGGTGACACCCTGAAAAGTA----------CG 1278
||.|||.|| |.||||.||..||.| ||
RBAM_032500__ 1257 ---GACTATCAA-----------AAACCCGGAGGAGCAGGGGATTGCCCG 1292
BSNT_05377___ 1279 GTG-----AAGAGCA-TTGAAGCAAAAGCCGGCA-ACTCGA----CAA-- 1315
|.| |||| || ||.||.||||| .||| ||||.| |||
RBAM_032500__ 1293 GAGATTAAAAGA-CACTTTAAACAAAA---TGCAGACTCAAATTTCAAAA 1338
BSNT_05377___ 1316 ----TGGGAAC-CAATG------ATTATTCA--------ATCGGTAAAA- 1345
.|||.|| .||.| ||.||.|| |||||.||||
RBAM_032500__ 1339 CAGGCGGGTACGGAAAGCTCGGTATCATCCAGCTTTGCCATCGGAAAAAG 1388
BSNT_05377___ 1346 ----ATTTAAATACGATCAGCACTGATATTACCAAAATGCA---GGA-CC 1387
|.|.|||||..| ||..|||||.||||.|||.| |.| |.
RBAM_032500__ 1389 CCTGAATGAAATAGAA-----ACAAATATTTCCAATATGAAAACGAAGCT 1433
BSNT_05377___ 1388 GGTTAACCAC-AATAGAAAACCGCTATTATTCAAAATTCAGTGCAATGGA 1436
||.|.||..| |||.|| |.||||||..|||.|||||.|||.||||
RBAM_032500__ 1434 GGATGACATCGAATCGA-----GATATTATAAAAAGTTCAGCGCACTGGA 1478
BSNT_05377___ 1437 TTCTGCGATT-CAAAAAATGAACGAACAAGCGTCCTATTTATCAC----- 1480
|.|.|| ||| .|.|||.|||||...|||.|.|| ||.|.||||
RBAM_032500__ 1479 TACGGC-ATTGGAGAAATTGAACAGCCAATCTTC--ATATCTCACGTCAA 1525
BSNT_05377___ 1481 ----AGCTTCTTGTACA--ATAA 1497
||..||||..||| ||||
RBAM_032500__ 1526 TGTTAGGATCTTCAACATCATAA 1548
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