Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05374 and RBAM_032480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:50
# Commandline: needle
# -asequence dna-align/BSNT_05374___fliT.1.9828.seq
# -bsequence dna-align/RBAM_032480___fliT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05374___fliT-RBAM_032480___fliT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05374___fliT-RBAM_032480___fliT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05374___fliT
# 2: RBAM_032480___fliT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity: 213/410 (52.0%)
# Similarity: 213/410 (52.0%)
# Gaps: 133/410 (32.4%)
# Score: 476.5
#
#
#=======================================
BSNT_05374___ 1 ATGAATAACA-----------TAGATCAACTATACACTGAGACGAAGA-- 37
|||||.|.|| |.| |||| || ||.|||||||
RBAM_032480__ 1 ATGAACAGCAATGTCTTTTCTTTG------TATA-AC-GAAACGAAGAAC 42
BSNT_05374___ 38 --GTATGCTGTCACACATACAAAATACG--CCGGAAAGCGATGAGCTTTT 83
|||.|| |.||| ..||..||| |||||||||||.||.||..|
RBAM_032480__ 43 ATGTACGC---CGCAC---TGAAGGACGCCCCGGAAAGCGACGATCTCAT 86
BSNT_05374___ 84 AAAACAAATTGAAG----AC----TTTGTGGCTAAACGGTCTGAACTGAT 125
.| |.|| || |||..||..|||.||...||..||.|
RBAM_032480__ 87 CA--------GCAGCGTTACGGCATTTACGGAGAAAAGGGAGGAGATGCT 128
BSNT_05374___ 126 T-CAGG-AGATATCTCTGCCGC---TTTCAGAAGAAGAGCGAAAGCAGAT 170
| |||| |.|.| ||||| ||||.|||||||| |||
RBAM_032480__ 129 TGCAGGCATAAA-----GCCGCCTTTTTCCGAAGAAGA---AAA------ 164
BSNT_05374___ 171 GAA-GCTAGTGCTGACATGGGATCAGCTTATTGTGAAGGAAATGGAACGA 219
|| || |||| ||||| ..|||...|..|||||.||.
RBAM_032480__ 165 -AACGC---TGCT---------TCAGC---AGGTGGCCGCGATGGACCGC 198
BSNT_05374___ 220 CTGA-------AGCAGTCAATCGCAGCAGAACTTCAG----------CAG 252
|||| .|.|||.||.||.| ||||| .|.
RBAM_032480__ 199 CTGATTACCGGCGAAGTGAAACGGA-------TTCAGGATGGTATACGAA 241
BSNT_05374___ 253 ATGAAAAGAAAACGTGTGATG---------------CATACGACGTATTT 287
||||||..|||||| .|.|.| ||||..||||||||
RBAM_032480__ 242 ATGAAATAAAAACG-CTTAAGAAAAAACGAATCTACCATAATACGTATTT 290
BSNT_05374___ 288 AAACCCTTAT-----AACAACATTACGATTGACGGCACATATTATGACAA 332
.||.||.||| |||.||| |.|||||||...|||||.|||||
RBAM_032480__ 291 CAATCCGTATCATCAAACGACA-----AGTGACGGCCGTTATTACGACAA 335
BSNT_05374___ 333 GCGTAAATAG 342
.||.||||||
RBAM_032480__ 336 ACGCAAATAG 345
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