Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05374 and RBAM_032480

See Amino acid alignment / Visit BSNT_05374 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:50
# Commandline: needle
#    -asequence dna-align/BSNT_05374___fliT.1.9828.seq
#    -bsequence dna-align/RBAM_032480___fliT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05374___fliT-RBAM_032480___fliT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05374___fliT-RBAM_032480___fliT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05374___fliT
# 2: RBAM_032480___fliT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity:     213/410 (52.0%)
# Similarity:   213/410 (52.0%)
# Gaps:         133/410 (32.4%)
# Score: 476.5
# 
#
#=======================================

BSNT_05374___      1 ATGAATAACA-----------TAGATCAACTATACACTGAGACGAAGA--     37
                     |||||.|.||           |.|      |||| || ||.|||||||  
RBAM_032480__      1 ATGAACAGCAATGTCTTTTCTTTG------TATA-AC-GAAACGAAGAAC     42

BSNT_05374___     38 --GTATGCTGTCACACATACAAAATACG--CCGGAAAGCGATGAGCTTTT     83
                       |||.||   |.|||   ..||..|||  |||||||||||.||.||..|
RBAM_032480__     43 ATGTACGC---CGCAC---TGAAGGACGCCCCGGAAAGCGACGATCTCAT     86

BSNT_05374___     84 AAAACAAATTGAAG----AC----TTTGTGGCTAAACGGTCTGAACTGAT    125
                     .|        |.||    ||    |||..||..|||.||...||..||.|
RBAM_032480__     87 CA--------GCAGCGTTACGGCATTTACGGAGAAAAGGGAGGAGATGCT    128

BSNT_05374___    126 T-CAGG-AGATATCTCTGCCGC---TTTCAGAAGAAGAGCGAAAGCAGAT    170
                     | |||| |.|.|     |||||   ||||.||||||||   |||      
RBAM_032480__    129 TGCAGGCATAAA-----GCCGCCTTTTTCCGAAGAAGA---AAA------    164

BSNT_05374___    171 GAA-GCTAGTGCTGACATGGGATCAGCTTATTGTGAAGGAAATGGAACGA    219
                      || ||   ||||         |||||   ..|||...|..|||||.||.
RBAM_032480__    165 -AACGC---TGCT---------TCAGC---AGGTGGCCGCGATGGACCGC    198

BSNT_05374___    220 CTGA-------AGCAGTCAATCGCAGCAGAACTTCAG----------CAG    252
                     ||||       .|.|||.||.||.|       |||||          .|.
RBAM_032480__    199 CTGATTACCGGCGAAGTGAAACGGA-------TTCAGGATGGTATACGAA    241

BSNT_05374___    253 ATGAAAAGAAAACGTGTGATG---------------CATACGACGTATTT    287
                     ||||||..|||||| .|.|.|               ||||..||||||||
RBAM_032480__    242 ATGAAATAAAAACG-CTTAAGAAAAAACGAATCTACCATAATACGTATTT    290

BSNT_05374___    288 AAACCCTTAT-----AACAACATTACGATTGACGGCACATATTATGACAA    332
                     .||.||.|||     |||.|||     |.|||||||...|||||.|||||
RBAM_032480__    291 CAATCCGTATCATCAAACGACA-----AGTGACGGCCGTTATTACGACAA    335

BSNT_05374___    333 GCGTAAATAG    342
                     .||.||||||
RBAM_032480__    336 ACGCAAATAG    345


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