Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05373 and RBAM_032470

See Amino acid alignment / Visit BSNT_05373 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:50
# Commandline: needle
#    -asequence dna-align/BSNT_05373.1.9828.seq
#    -bsequence dna-align/RBAM_032470.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05373-RBAM_032470.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05373-RBAM_032470.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05373
# 2: RBAM_032470
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 437
# Identity:     244/437 (55.8%)
# Similarity:   244/437 (55.8%)
# Gaps:         118/437 (27.0%)
# Score: 623.5
# 
#
#=======================================

BSNT_05373         1 TTGAAGAGCATTGAA-GATTATACGCTTT--TATCAGCTTATTATCATCT     47
                     ||| |||...||||| |||  |||..|||  |.|||||.|||||.||.||
RBAM_032470        1 TTG-AGAAGTTTGAACGAT--TACCATTTGGTGTCAGCCTATTACCAGCT     47

BSNT_05373        48 TCTTTTTACCATTGAAGAAGGGTTGTGTTATTTGATAGAGGCTGAAGAGA     97
                     |||||||||.|||||.||.|||.|.||.||..||.|.||..|..|.||..
RBAM_032470       48 TCTTTTTACGATTGATGAGGGGCTTTGCTACCTGTTGGACACGCAGGATG     97

BSNT_05373        98 ATTTATCAAAAACAGAAGGGGATCGGATCTACCAAGATCTGATCCAAGCC    147
                     ||||.|..||.||.||.||.||.|||||.|||.|.|||.||||.||.||.
RBAM_032470       98 ATTTTTTTAAGACGGAGGGCGAGCGGATTTACAACGATTTGATTCAGGCT    147

BSNT_05373       148 TTTTTTTATTTGGATTCAACACATTCAACACTTC-----TCT-TCATTAT    191
                     ||||||.||.|.|||||..|.|||   .|.||||     ||| |||||  
RBAM_032470      148 TTTTTTCATCTCGATTCCTCTCAT---GCGCTTCTGCTGTCTATCATT--    192

BSNT_05373       192 GGATTCGCGGTGTGCTGAAATTTGTGTGAAAG-------------CATTT    228
                              |.||||.||    ||.||| .||             |||||
RBAM_032470      193 ---------GAGTGCCGA----TGCGTG-GAGACGGCGATCCGCTCATTT    228

BSNT_05373       229 GACCAAATTTTTGCGGAGTT-----TGATCAATTGGTCTCTTTCTCTTTT    273
                     |||.|.||.|||..|||.||     ||.|.||      |..||.|..|||
RBAM_032470      229 GACGAGATCTTTCAGGATTTCAGCATGTTAAA------TGATTATGATTT    272

BSNT_05373       274 CCC----------TCTCATGAGTTCTGTGAGTATTTAAAGGAA-CAT-TT    311
                     |||          |.|||.|||||         ||||||  || ||| ||
RBAM_032470      273 CCCGTCCGCCCCTTTTCAGGAGTT---------TTTAAA--AACCATCTT    311

BSNT_05373       312 TCTGATTCATTATAGAAAA----TGGATG--------------CTGTCTA    343
                     ||||...||||||    ||    ||||||              |||    
RBAM_032470      312 TCTGCCGCATTAT----AAGCTGTGGATGGAGCAGACGCACGACTG----    353

BSNT_05373       344 TTCATCAA--TGTATGGAACCCTTTTTAATCAATTAG    378
                       ||||||  .|||||      ||.||    .|.|||
RBAM_032470      354 --CATCAAACCGTATG------TTCTT----CACTAG    378


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.