Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05370 and RBAM_032450
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:50
# Commandline: needle
# -asequence dna-align/BSNT_05370___secA.1.9828.seq
# -bsequence dna-align/RBAM_032450___secA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05370___secA-RBAM_032450___secA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05370___secA-RBAM_032450___secA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05370___secA
# 2: RBAM_032450___secA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2530
# Identity: 2120/2530 (83.8%)
# Similarity: 2120/2530 (83.8%)
# Gaps: 8/2530 ( 0.3%)
# Score: 8969.0
#
#
#=======================================
BSNT_05370___ 1 ATGCTTGGAATTTTAAATAAAATGTTTGATCCAACAAAACGTACGCTGAA 50
||||||||.|||||||||||||||||||||||.||.||||||.|||||||
RBAM_032450__ 1 ATGCTTGGGATTTTAAATAAAATGTTTGATCCGACCAAACGTGCGCTGAA 50
BSNT_05370___ 51 TAGATACGAAAAAATTGCTAACGATATTGATGCGATTCGCGGAGACTATG 100
.|.||||||||||||.||.||.||.||||||||..|..|.|||||.||||
RBAM_032450__ 51 CAAATACGAAAAAATAGCAAATGACATTGATGCCGTAAGAGGAGATTATG 100
BSNT_05370___ 101 AAAATCTCTCTGACGACGCGTTGAAACATAAAACAATTGAATTTAAAGAG 150
||||||||||||||||.|||.|.|||||||||||....||||||||||||
RBAM_032450__ 101 AAAATCTCTCTGACGAGGCGCTTAAACATAAAACGGCAGAATTTAAAGAG 150
BSNT_05370___ 151 CGTCTTGAAAAAGGGGCGACAACGGATGATCTTCTTGTTGAAGCTTTCGC 200
||.|||||||||||.|..||.||||||||.||||||||.|||||.||.||
RBAM_032450__ 151 CGGCTTGAAAAAGGAGAAACGACGGATGACCTTCTTGTCGAAGCGTTTGC 200
BSNT_05370___ 201 TGTTGTTCGAGAAGCTTCACGCCGCGTAACAGGTATGTTTCCGTTTAAAG 250
.||.|||||.||||||||.|||||||||||.||.|||||.||||||||||
RBAM_032450__ 201 CGTCGTTCGTGAAGCTTCCCGCCGCGTAACCGGCATGTTCCCGTTTAAAG 250
BSNT_05370___ 251 TCCAGCTCATGGGGGGCGTAGCGCTTCATGACGGAAATATCGCGGAAATG 300
|.|||||.|||||||||.|.||.||||||||.||.||.|||.|.||||||
RBAM_032450__ 251 TACAGCTGATGGGGGGCATCGCCCTTCATGAAGGGAACATCTCCGAAATG 300
BSNT_05370___ 301 AAAACAGGGGAAGGGAAAACATTAACGTCTACTCTGCCTGTTTATTTAAA 350
||||||||||||||||||||..|.|||||.||.||.||.||.||||||||
RBAM_032450__ 301 AAAACAGGGGAAGGGAAAACGCTGACGTCCACGCTTCCCGTGTATTTAAA 350
BSNT_05370___ 351 TGCGTTAACAGGTAAAGGCGTACACGTCGTGACTGTCAACGAATACTTGG 400
||||||.||.||.||||||||.||||||||.||.|||||||||||..|||
RBAM_032450__ 351 TGCGTTGACGGGAAAAGGCGTTCACGTCGTAACGGTCAACGAATATCTGG 400
BSNT_05370___ 401 CAAGCCGTGACGCTGAACAAATGGGGAAAATTTTCGAGTTTCTCGGTCTG 450
|.||||||||.||..|.||||||||..||||.||.|.|||||||||.||.
RBAM_032450__ 401 CGAGCCGTGATGCCCAGCAAATGGGAGAAATCTTTGCGTTTCTCGGGCTT 450
BSNT_05370___ 451 ACTGTCGGCTTGAATTTAAACTCAATGTCAAAAGACGAAAAACGGGAAGC 500
||.||||||.||||..|.||.||.|||||||||||||||||.||.|||||
RBAM_032450__ 451 ACAGTCGGCCTGAACCTGAATTCGATGTCAAAAGACGAAAAGCGTGAAGC 500
BSNT_05370___ 501 TTATGCAGCTGACATTACTTACTCTACAAACAATGAGCTTGGCTTCGACT 550
|||.|||||.||.||.||.||.||.||.||||||||.||.|||||.||.|
RBAM_032450__ 501 TTACGCAGCCGATATCACGTATTCAACGAACAATGAACTCGGCTTTGATT 550
BSNT_05370___ 551 ATTTGCGTGACAATATGGTTCTTTATAAAGAGCAGATGGTTCAGCGCCCG 600
|||||||||||||.|||||.||.||||||||.||||||||.|||||||||
RBAM_032450__ 551 ATTTGCGTGACAACATGGTGCTCTATAAAGAACAGATGGTGCAGCGCCCG 600
BSNT_05370___ 601 CTTCATTTTGCGGTAATAGATGAAGTTGACTCTATTTTAATTGATGAAGC 650
|||||||||||.||.||.||||||||.||.||.||||||.|.||||||||
RBAM_032450__ 601 CTTCATTTTGCCGTTATTGATGAAGTCGATTCAATTTTAGTCGATGAAGC 650
BSNT_05370___ 651 GAGAACACCTCTTATCATTTCTGGACAAGCTGCCAAATCCACTAAGCTGT 700
||||||.||..|.||.|||||.|||||||||...||.|||||.||.||||
RBAM_032450__ 651 GAGAACGCCATTGATTATTTCCGGACAAGCTCAGAAGTCCACAAAACTGT 700
BSNT_05370___ 701 ACGTACAGGCAAATGCTTTTGTCCGTACGTT----AAAAGCGGAGAAGGA 746
||||.|||||||||||.||||||||.||..| ||| ||..||||
RBAM_032450__ 701 ACGTGCAGGCAAATGCGTTTGTCCGCACACTCAAGAAA----GATCAGGA 746
BSNT_05370___ 747 TTACACGTACGATATCAAAACAAAAGCTGTACAGCTTACTGAAGAAGGAA 796
|||.|||||.||..|||||||.||.|..||.|||||.||.||||||||||
RBAM_032450__ 747 TTATACGTATGACGTCAAAACGAAGGGCGTTCAGCTGACGGAAGAAGGAA 796
BSNT_05370___ 797 TGACGAAGGCGGAAAAAGCGTTCGGCATCGATAACCTCTTTGATGTGAAG 846
||||||||||.||||||.|||||||||||||.|||||.||||||||.||.
RBAM_032450__ 797 TGACGAAGGCTGAAAAAACGTTCGGCATCGACAACCTGTTTGATGTCAAA 846
BSNT_05370___ 847 CATGTCGCGCTCAACCACCATATCAACCAGGCCTTAAAAGCTCACGTTGC 896
.|.||.||..|.||||||||||||||||||||.||||||||.||.|..||
RBAM_032450__ 847 AACGTGGCCTTGAACCACCATATCAACCAGGCTTTAAAAGCCCATGCGGC 896
BSNT_05370___ 897 GATGCAAAAGGACGTTGACTATGTAGTGGAAGACGGACAGGTTGTTATTG 946
||||||.||.|||||.||.|||||.||.||.|||||.|||||.||.||.|
RBAM_032450__ 897 GATGCAGAAAGACGTGGATTATGTTGTTGAGGACGGCCAGGTCGTCATCG 946
BSNT_05370___ 947 TTGATTCCTTCACGGGACGTCTGATGAAAGGCCGCCGCTACAGTGAGGGG 996
|||||||||||||.||.||||||||||||||.|||||||||||.||.||.
RBAM_032450__ 947 TTGATTCCTTCACCGGCCGTCTGATGAAAGGACGCCGCTACAGCGAAGGT 996
BSNT_05370___ 997 CTTCACCAAGCGATTGAAGCGAAGGAAGGGCTTGAGATTCAAAACGAAAG 1046
||||||||.||||||||.|||||.|||||.||.|||||||||||.|||||
RBAM_032450__ 997 CTTCACCAGGCGATTGAGGCGAAAGAAGGCCTGGAGATTCAAAATGAAAG 1046
BSNT_05370___ 1047 CATGACCTTGGCGACGATTACGTTCCAAAACTACTTCCGAATGTACCAAA 1096
||||||.||||||||||||||||||||||||||.|||||.||||||.|||
RBAM_032450__ 1047 CATGACATTGGCGACGATTACGTTCCAAAACTATTTCCGTATGTACGAAA 1096
BSNT_05370___ 1097 AACTTGCCGGTATGACGGGTACAGCTAAGACAGAGGAAGAAGAATTCCGC 1146
|.||.|||||||||||.|||||.||.||.||.||.||.||||||||||||
RBAM_032450__ 1097 AGCTGGCCGGTATGACCGGTACCGCAAAAACGGAAGAGGAAGAATTCCGC 1146
BSNT_05370___ 1147 AACATCTACAACATGCAGGTTGTCACGATCCCTACCAACAGGCCTGTTGT 1196
||.||.||.||||||||||||||..|.|||||.||||||..|||.||..|
RBAM_032450__ 1147 AATATTTATAACATGCAGGTTGTATCCATCCCGACCAACCAGCCGGTCAT 1196
BSNT_05370___ 1197 CCGTGATGACCGTCCTGATTTAATTTACCGCACGATGGAAGGAAAGTTTA 1246
||||||.||||||||.||.||.||.||||||.|.||||||||.||.||.|
RBAM_032450__ 1197 CCGTGACGACCGTCCGGACTTGATCTACCGCTCAATGGAAGGGAAATTCA 1246
BSNT_05370___ 1247 AGGCAGTTGCGGAGGATGTCGCACAGCGTTACATGACGGGACAGCCTGTT 1296
||||.||.||||||||||||||.|||||.||||||||.||||||||.|||
RBAM_032450__ 1247 AGGCGGTGGCGGAGGATGTCGCCCAGCGCTACATGACCGGACAGCCGGTT 1296
BSNT_05370___ 1297 CTAGTCGGTACGGTTGCCGTTGAAACATCTGAATTGATTTCTAAGCTGCT 1346
||.|||||.|||||||||||||||||.|||||||||||||||||.||.||
RBAM_032450__ 1297 CTTGTCGGCACGGTTGCCGTTGAAACGTCTGAATTGATTTCTAAACTTCT 1346
BSNT_05370___ 1347 TAAAAACAAAGGAATTCCGCATCAAGTGTTAAATGCCAAAAACCATGAAC 1396
.|||||||||||.|||||||||||.|||.|.|||||||||||||||||.|
RBAM_032450__ 1347 GAAAAACAAAGGGATTCCGCATCAGGTGCTGAATGCCAAAAACCATGAGC 1396
BSNT_05370___ 1397 GTGAAGCGCAGATCATTGAAGAGGCCGGCCAAAAAGGCGCAGTTACGATT 1446
|||||||.|||||.||||||||.||.||.|||||||||||.||.||||||
RBAM_032450__ 1397 GTGAAGCTCAGATTATTGAAGAAGCGGGACAAAAAGGCGCTGTCACGATT 1446
BSNT_05370___ 1447 GCGACTAACATGGCGGGGCGCGGAACGGACATTAAGCTTGGCGAAGGTGT 1496
|||||.|||||||||||.||||||||.||||||||.||.||||||||.||
RBAM_032450__ 1447 GCGACCAACATGGCGGGACGCGGAACCGACATTAAACTCGGCGAAGGCGT 1496
BSNT_05370___ 1497 AAAAGAGCTTGGCGGACTCGCTGTTGTCGGAACAGAACGACATGAATCAC 1546
|||||||||||||||.||.||.||.|||||.||.|||||.||.|||||.|
RBAM_032450__ 1497 AAAAGAGCTTGGCGGCCTTGCAGTCGTCGGTACGGAACGCCACGAATCCC 1546
BSNT_05370___ 1547 GCCGGATTGACAATCAGCTTCGAGGTCGTTCCGGACGTCAGGGAGACCCG 1596
|||||||||||||||||||.||.||.|||||.||||||||||||||||||
RBAM_032450__ 1547 GCCGGATTGACAATCAGCTCCGCGGACGTTCAGGACGTCAGGGAGACCCG 1596
BSNT_05370___ 1597 GGGATTACTCAATTTTATCTTTCTATGGAAGATGAATTGATGCGCAGATT 1646
||.||.||.||||||||||||||.|||||||||||||||||||||.|.||
RBAM_032450__ 1597 GGCATCACACAATTTTATCTTTCAATGGAAGATGAATTGATGCGCCGTTT 1646
BSNT_05370___ 1647 CGGAGCTGAGCGGACAATGGCGATGCTGGACCGCTTCGGCATGGACGACT 1696
|||||||||.|||||.|||||||||||.|||||.|||||.|||||.||||
RBAM_032450__ 1647 CGGAGCTGAACGGACGATGGCGATGCTTGACCGGTTCGGTATGGATGACT 1696
BSNT_05370___ 1697 CTACTCCAATCCAAAGCAAAATGGTATCTCGCGCGGTTGAATCGTCTCAA 1746
|.||.||.||.||.|||||||||||.||.|||||.||.|||||.||||||
RBAM_032450__ 1697 CCACGCCGATTCAGAGCAAAATGGTGTCACGCGCCGTGGAATCATCTCAA 1746
BSNT_05370___ 1747 AAACGAGTCGAAGGCAATAACTTCGATTCTCGTAAACAGCTTCTGCAATA 1796
|||||.||||||||.||.|||||.|||||.||||||||||||||.|||||
RBAM_032450__ 1747 AAACGTGTCGAAGGAAACAACTTTGATTCACGTAAACAGCTTCTTCAATA 1796
BSNT_05370___ 1797 TGATGATGTTCTCCGCCAGCAGCGTGAGGTCATTTATAAGCAGCGCTTTG 1846
|||.||.||.|||||.||||||||.||.||||||||.||||||||.||||
RBAM_032450__ 1797 TGACGACGTGCTCCGTCAGCAGCGCGAAGTCATTTACAAGCAGCGTTTTG 1846
BSNT_05370___ 1847 AAGTCATTGACTCTGAAAACCTGCGTGAAATCGTTGAAAATATGATCAAG 1896
||||||||||||||||||||||||||||.||.||.|||...|||||||||
RBAM_032450__ 1847 AAGTCATTGACTCTGAAAACCTGCGTGACATTGTGGAAGGCATGATCAAG 1896
BSNT_05370___ 1897 TCTTCTCTCGAACGCGCAATTGCAGCCTATACGCCAAGAGAAGAGCTTCC 1946
||||||||.||.||.||.|||||.||.||||||||.|.|||.||||||||
RBAM_032450__ 1897 TCTTCTCTGGAGCGTGCGATTGCCGCTTATACGCCGAAAGAGGAGCTTCC 1946
BSNT_05370___ 1947 TGAGGAGTGGAAGCTTGACGGTCTAGTTGATCTTATCAACACAACTTATC 1996
.||.||.|||||.||||||||.||.||.||.||..|.||..||||.||||
RBAM_032450__ 1947 GGAAGAATGGAATCTTGACGGCCTCGTGGAGCTGGTGAATTCAACGTATC 1996
BSNT_05370___ 1997 TTGATGAAGGTGCGCTTGAGAAGAGCGATATCTTCGGGAAAGAACCGGAT 2046
||||||||||.||.|||||.|||||||||||||||||.||||||||||||
RBAM_032450__ 1997 TTGATGAAGGCGCACTTGAAAAGAGCGATATCTTCGGAAAAGAACCGGAT 2046
BSNT_05370___ 2047 GAAATGCTTGAGCTCATTATGGATCGCATCATCACAAAATATAATGAGAA 2096
|||||||.||||.|.||.|||||.||||||||.||||||||||||||.||
RBAM_032450__ 2047 GAAATGCATGAGATGATCATGGACCGCATCATGACAAAATATAATGAAAA 2096
BSNT_05370___ 2097 GGAAGAGCAATTCGGCAAAGAGCAAATGCGCGAATTCGAAAAAGTTATCG 2146
.||||||.|.|||||||.||||||.|||||.|||||.||||||||.||||
RBAM_032450__ 2097 AGAAGAGAATTTCGGCACAGAGCAGATGCGTGAATTTGAAAAAGTCATCG 2146
BSNT_05370___ 2147 TTCTTCGTGCCGTTGATTCTAAATGGATGGATCATATTGATGCGATGGAT 2196
|..|.||||||||||||||.||||||||||||||||||||||||||||||
RBAM_032450__ 2147 TATTGCGTGCCGTTGATTCAAAATGGATGGATCATATTGATGCGATGGAT 2196
BSNT_05370___ 2197 CAGCTTCGCCAAGGGATTCACCTTCGTGCTTACGCGCAGACGAACCCTCT 2246
|||||.||.||||||||||||||.||.|||||.||||||||.||.||.||
RBAM_032450__ 2197 CAGCTGCGTCAAGGGATTCACCTCCGCGCTTATGCGCAGACAAATCCGCT 2246
BSNT_05370___ 2247 TCGTGAGTATCAAATGGAAGGTTTTGCGATGTTTGAGCATATGATTGAAT 2296
.|||||.||||||||||||||.||.||.|||||||||||.||||||||.|
RBAM_032450__ 2247 GCGTGAATATCAAATGGAAGGCTTCGCAATGTTTGAGCACATGATTGAGT 2296
BSNT_05370___ 2297 CAATTGAGGACGAGGTCGCAAAATTTGTGATGAAAGCTGAGATTGAAAAC 2346
|.|||||||||||.||.||.|||||.||.|||||.||.||||||||||.|
RBAM_032450__ 2297 CCATTGAGGACGAAGTTGCGAAATTCGTCATGAAGGCCGAGATTGAAAGC 2346
BSNT_05370___ 2347 AATCTGGAGCGTGAAGAGGTTGTACAAGGCCAAACAACAGCTCATCAGCC 2396
||||||||.||.|||||.|||||.||.||||||||.||.|||||||||||
RBAM_032450__ 2347 AATCTGGAACGCGAAGAAGTTGTTCAGGGCCAAACGACGGCTCATCAGCC 2396
BSNT_05370___ 2397 GCAAGAAGGCGACGATAACAAAAAAGCAAAGAAAGCACCGGTTCGCAAAG 2446
|||.||.|||||.||...||||.||||.||.|||||.|||||.||.||||
RBAM_032450__ 2397 GCAGGACGGCGATGAGGCCAAACAAGCGAAAAAAGCGCCGGTGCGAAAAG 2446
BSNT_05370___ 2447 TGGTTGATATCGGCCGAAATGCCCCATGCCACTGCGGAAGCGGGAAAAAA 2496
|.||.||||||||.||.||.||.||.|||||.|||||.|||||.||||||
RBAM_032450__ 2447 TTGTGGATATCGGACGCAACGCGCCTTGCCATTGCGGCAGCGGAAAAAAA 2496
BSNT_05370___ 2497 TATAAAAATTGCTGCGGCCGTACTGAATAG 2526
||||||||||||||||||||.||.||||||
RBAM_032450__ 2497 TATAAAAATTGCTGCGGCCGGACAGAATAG 2526
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