Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_05364 and RBAM_032400

See Amino acid alignment / Visit BSNT_05364 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence dna-align/BSNT_05364___ftsX.1.9828.seq
#    -bsequence dna-align/RBAM_032400___ftsX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05364___ftsX-RBAM_032400___ftsX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05364___ftsX-RBAM_032400___ftsX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05364___ftsX
# 2: RBAM_032400___ftsX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity:     675/901 (74.9%)
# Similarity:   675/901 (74.9%)
# Gaps:          74/901 ( 8.2%)
# Score: 2747.0
# 
#
#=======================================

BSNT_05364___      0 --------------------------------------------------      0
                                                                       
RBAM_032400__      1 ATGGTTCTTATGATTAAAATTCTCGGGCGCCATTTGCGTGAGAGTTTTAA     50

BSNT_05364___      1 ----------------------ATGACATTTGCATCCATTAGTGCTGTAA     28
                                           |||||||||||||||||.|||||.||.|
RBAM_032400__     51 ATCTCTCGGAAGAAACACATGGATGACATTTGCATCCATCAGTGCCGTTA    100

BSNT_05364___     29 CCGTTACGCTGATTTTAGTCGGCGTGTTTTTAGTGATTATGCTGAATTTG     78
                     |||||||..|||||||.|||||||||||||||||.||||||||||||||.
RBAM_032400__    101 CCGTTACATTGATTTTGGTCGGCGTGTTTTTAGTCATTATGCTGAATTTA    150

BSNT_05364___     79 AATAACATGGCCACGAATGCTGAAAAACAAGTCGAAATCAAAGTGCTGAT    128
                     ||.||||||||.|..||||||||||||.||||.|||||.|||||..|.||
RBAM_032400__    151 AACAACATGGCTAAAAATGCTGAAAAAGAAGTGGAAATTAAAGTATTAAT    200

BSNT_05364___    129 TGATCTGACTGCAGATCAGAAGGCACAGGACAAGCTTCAGAACGATATTA    178
                     .||||||||..|..||.||||..|.|||||.|.|||.|||||.||.||||
RBAM_032400__    201 CGATCTGACGTCTAATAAGAAAACGCAGGATACGCTGCAGAATGAGATTA    250

BSNT_05364___    179 AGGAACTGAAGGGCATTCAGAGTGTCACTTTTTCATCTAAAGAAAAAGAG    228
                     |.||..|...|||.||.||.||.||....||||||||||||||.||||||
RBAM_032400__    251 AAGACATCTCGGGAATCCAAAGCGTAGAGTTTTCATCTAAAGATAAAGAG    300

BSNT_05364___    229 CTTGACCAGCTGGTTGACAGTTTTGGTGACAGCGGAAAATCCCTGACAAT    278
                     |||||.||..||||..|.||.||.||.|||||||||||..||.|||.|||
RBAM_032400__    301 CTTGATCAATTGGTCAAAAGCTTCGGCGACAGCGGAAAGGCCATGAAAAT    350

BSNT_05364___    279 GAAGGATCAGGAAAACCCGCTTAATGATGCGTTTGTCGTCAAAACGACAG    328
                     |.|.|||||||||||||||||.||..|.||||||.|||||||||||||||
RBAM_032400__    351 GCAAGATCAGGAAAACCCGCTGAACAACGCGTTTATCGTCAAAACGACAG    400

BSNT_05364___    329 ATCCGCATGATACGCCGAACGTGGCGAAAAAGATCGAAAAAATGGATCAT    378
                     |||||||||||||||||||.||.||||||||.||.||.||..|.||||||
RBAM_032400__    401 ATCCGCATGATACGCCGAAAGTCGCGAAAAAAATTGAGAAGCTTGATCAT    450

BSNT_05364___    379 GTTTATAAAGTCACTTATGGAAAAGAAGAGGTCAGCCGTTTGTTTAAAGT    428
                     ||.||||||||.||.||.||.||||||||.|||||||||.|||||||..|
RBAM_032400__    451 GTGTATAAAGTGACATACGGGAAAGAAGAAGTCAGCCGTCTGTTTAAGAT    500

BSNT_05364___    429 GGTCGGCGTTTCCCGCAACATCGGAATCGCGTTAATTATCGGCCTGGTAT    478
                     .|||||.||.||.|||||||||||.||.||||||||.||||||||..|.|
RBAM_032400__    501 CGTCGGGGTGTCACGCAACATCGGGATTGCGTTAATCATCGGCCTTCTGT    550

BSNT_05364___    479 TTACGGCGATGTTCTTAATTTCCAACACCATTAAAATTACAATTTTCGCA    528
                     |.||||||||||||||||||||.||.||.||||||||.||.||||||||.
RBAM_032400__    551 TCACGGCGATGTTCTTAATTTCAAATACGATTAAAATCACGATTTTCGCC    600

BSNT_05364___    529 AGAAGAAAAGAAATTGAAATCATGAAGCTTGTCGGTGCGACAAACTGGTT    578
                     |||||||||||.|||||||||||||||||||||||.||||||||||||||
RBAM_032400__    601 AGAAGAAAAGAGATTGAAATCATGAAGCTTGTCGGCGCGACAAACTGGTT    650

BSNT_05364___    579 TATCCGCTGGCCGTTTTTCCTTGAAGGATTGCTGCTAGGCGTATTCGGTT    628
                     |||||||||||||||.|||||.|||||..|||||||.||.||||||||||
RBAM_032400__    651 TATCCGCTGGCCGTTCTTCCTGGAAGGGCTGCTGCTGGGGGTATTCGGTT    700

BSNT_05364___    629 CTGTGATTCCGATTGCACTGGTGCTGAGCACTTACCAATACG-TCATCGG    677
                     ||.|.||.|||||.||.||.||||||||.||.||||||| || |..|||.
RBAM_032400__    701 CTATCATACCGATCGCTCTCGTGCTGAGTACGTACCAAT-CGATGGTCGC    749

BSNT_05364___    678 ATGGGTCGTTCCAAAGGTTCAAGGATCATTTGTCTCTCTTCTTCCTTATA    727
                     .|||||.|..||.||.|||||.||.||||||||.||.|||||.||.||.|
RBAM_032400__    750 TTGGGTGGCCCCGAAAGTTCAGGGCTCATTTGTTTCACTTCTGCCGTACA    799

BSNT_05364___    728 ATCCATTTGTATTCCAAGTTTCGCTAGTGCTGATTGCAATCGGCGCAGTA    777
                     .|||.|||||.||||||||.||.||.|||||.|||...||||||||.||.
RBAM_032400__    800 GTCCGTTTGTGTTCCAAGTATCACTTGTGCTCATTCTGATCGGCGCGGTT    849

BSNT_05364___    778 ATTGGAGTATGGGGAAGTCTGACTTCCATCCGCAAGTTTTTGCGAGTATA    827
                     ||.|||||||||||||||||||||||||||||.||.||..|.||.|||||
RBAM_032400__    850 ATCGGAGTATGGGGAAGTCTGACTTCCATCCGGAAATTCCTTCGTGTATA    899

BSNT_05364___    828 A    828
                     |
RBAM_032400__    900 A    900


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.