Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05362 and RBAM_032380

See Amino acid alignment / Visit BSNT_05362 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence dna-align/BSNT_05362___yvjB.1.9828.seq
#    -bsequence dna-align/RBAM_032380___yvjB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05362___yvjB-RBAM_032380___yvjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05362___yvjB-RBAM_032380___yvjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05362___yvjB
# 2: RBAM_032380___yvjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1468
# Identity:    1075/1468 (73.2%)
# Similarity:  1075/1468 (73.2%)
# Gaps:          92/1468 ( 6.3%)
# Score: 3897.0
# 
#
#=======================================

BSNT_05362___      1 ATGAATCAAAAAATAATGGCTGTGATAGCAGCAGGGAGCATGCTGTTCGG     50
                     |||||.||.|||||.||.||.||||||||.||.|..|||||..|||.|||
RBAM_032380__      1 ATGAAGCAGAAAATGATCGCAGTGATAGCGGCCGTCAGCATCATGTGCGG     50

BSNT_05362___     51 AGGCGCCGGTGT-ATAT----GCGGGAAT-CAACCTGCTTGAGATGGATA     94
                     .||.||     | ||||    |.||.|.| ||.||     || ||..|| 
RBAM_032380__     51 CGGAGC-----TCATATTGCCGGGGCAGTACAGCC-----GA-ATTCAT-     88

BSNT_05362___     95 AGCCCCAGACTGCAGCAGTTCCCGCGACGGCACAAGCTGACTCTGAACGG    144
                          ||||| ||||.|              |.||||          |||
RBAM_032380__     89 -----CAGAC-GCAGAA--------------AGAAGC----------CGG    108

BSNT_05362___    145 GATAAAGCTATGGACAAAATCGAAAAAGCGTATGAGTTAATTTCGAATGA    194
                           ||.|||||.||||||||||||||.||||||.|.||.|||||.||
RBAM_032380__    109 ------GCAATGGAAAAAATCGAAAAAGCTTATGAGCTGATCTCGAACGA    152

BSNT_05362___    195 GTACGTAGAAAAAGTAGATAGAGAAAAGCTGCTCGAGGGAGCCATCCAGG    244
                     .|||||.|||||.|||||||.|||||||||.||.||.|||||.||.||||
RBAM_032380__    153 ATACGTGGAAAATGTAGATAAAGAAAAGCTTCTTGAAGGAGCGATTCAGG    202

BSNT_05362___    245 GAATGCTGTCTACGCTAAATGATCCTTATTCTGTTTACATGGATAAGCAG    294
                     |.|||||||||||..||||.||.||||||||.|||||.|||||.||||||
RBAM_032380__    203 GGATGCTGTCTACATTAAACGACCCTTATTCCGTTTATATGGACAAGCAG    252

BSNT_05362___    295 ACAGCTAAGCAATTTTCTGATTCTCTTGATTCCTCATTTGAAGGCATCGG    344
                     ||.||||||||.|||||.||||||||||||||.||.||.|||||.|||||
RBAM_032380__    253 ACCGCTAAGCAGTTTTCCGATTCTCTTGATTCTTCTTTCGAAGGGATCGG    302

BSNT_05362___    345 GGCTGAGGTTGGCATGGAAGACGGCAAAATTATTATTGTTTCCCCATTCA    394
                     .|||||.||.||.|||||.|||...|||||.|||||.||.||.||.||.|
RBAM_032380__    303 CGCTGAAGTCGGTATGGAGGACAATAAAATCATTATCGTATCACCGTTTA    352

BSNT_05362___    395 AGAAATCGCCAGCGGAAAAAGCCGGGTTGAAGCCTAATGATGAAATTATC    444
                     ||.||||.||.|||||||||||.||..|.|||||.|||||||||||.|||
RBAM_032380__    353 AGCAATCTCCGGCGGAAAAAGCGGGACTCAAGCCGAATGATGAAATCATC    402

BSNT_05362___    445 AGCATCAATGGAGAATCGATGGCCGGCAAGGATTTAAACCACGCTGTGTT    494
                     |||||.||.||.||.||.|||..|||.||.|.|||||||.|.||.|||.|
RBAM_032380__    403 AGCATAAACGGCGAGTCAATGAACGGGAAAGGTTTAAACGAAGCCGTGCT    452

BSNT_05362___    495 AAAAATAAGAGGAAAAAAAGGGTCCAGCGTTTCAATGAAGATTCAGCGGC    544
                     .|||||.||||||||||||||.||.|..|||||.||.||.||.|||||.|
RBAM_032380__    453 GAAAATCAGAGGAAAAAAAGGATCGAAGGTTTCTATTAAAATACAGCGTC    502

BSNT_05362___    545 CTGGAACGAAGAAGCAGCTGTCATTCCGGATCAAGAGAGCTGAGATTCCA    594
                     |.||.||..|.||.|||||||||||||||||.||.|||||.||.||.||.
RBAM_032380__    503 CGGGTACTGATAAACAGCTGTCATTCCGGATTAAAAGAGCGGAAATCCCG    552

BSNT_05362___    595 CTCGAAACGGTTTTTGCAT----CAGAGAAAAAAGTACAG--GGGCATTC    638
                     ||.|||||.||.|||||.|    ||.||||      .|||  ||.|||..
RBAM_032380__    553 CTTGAAACCGTATTTGCTTCCCGCAAAGAA------TCAGGCGGTCATCA    596

BSNT_05362___    639 TGTCGGATATATTGCCATCTCTACTTTTTCTGAGCACACCGCAGAGGATT    688
                     ||||||.||.||.|.|||.||.||.|||||.|||||.|||||..||||.|
RBAM_032380__    597 TGTCGGCTACATCGGCATATCGACATTTTCCGAGCATACCGCCCAGGACT    646

BSNT_05362___    689 TTGCAAAAGCGCTGAGGGAGCTTGAGAAAAAAGAAATAGAAGGACTTGTC    738
                     |.||....|||||||...|||||||.|||.|||..||.||.||.||.|||
RBAM_032380__    647 TCGCCGCGGCGCTGAAAAAGCTTGAAAAACAAGGGATTGACGGTCTCGTC    696

BSNT_05362___    739 ATTGATGTACGCGGCAACCCGGGCGGATATCTTCAAAGTGTGGAAGAAAT    788
                     .||||||||.|.||.||.||.|||||.||.||||||||.||.|||.||||
RBAM_032380__    697 CTTGATGTAAGAGGGAATCCCGGCGGCTACCTTCAAAGCGTTGAACAAAT    746

BSNT_05362___    789 TCTTAAGCATTTCGTTACAAAGGATCA-GCCGTATATTCAGATTGCTGAA    837
                     |.|.|||||||||.|.|||||.|| || |||||||||.||.|||||.||.
RBAM_032380__    747 TTTAAAGCATTTCATCACAAAAGA-CATGCCGTATATCCAAATTGCGGAG    795

BSNT_05362___    838 CGCAATGGGGATAAAAAACGTTATTTTTCAACATTGACCCATAAAAAAGC    887
                     ||.||.||.||||||||.|..|||||.|||||.||.|..|||||.||..|
RBAM_032380__    796 CGTAACGGCGATAAAAAGCAATATTTCTCAACCTTAAAACATAAGAAGCC    845

BSNT_05362___    888 GTACCCTGTCAATGTGATTACGGATAAAGGAAGTGCCTCTGCATCAGAAA    937
                     |||.||.||||||||.|||||||||||||||||.|||||.||.|||||||
RBAM_032380__    846 GTATCCCGTCAATGTCATTACGGATAAAGGAAGCGCCTCCGCTTCAGAAA    895

BSNT_05362___    938 TTCTTGCCGGCGCATTAAAGGAAGCTGGCCATTATGATGTTGTAGGCGAT    987
                     |||||||.||.||.|||||.|||||.||.||||||||.|||||.||.||.
RBAM_032380__    896 TTCTTGCGGGTGCGTTAAAAGAAGCGGGACATTATGACGTTGTCGGTGAC    945

BSNT_05362___    988 ACGTCTTTTGGAAAGGGAACGGTTCAACAGGCTGTGCCAATGGGGGACGG   1037
                     ||.|||||.||.||.|||||||||||.|||||.|||||.|||||.|||||
RBAM_032380__    946 ACTTCTTTCGGTAAAGGAACGGTTCAGCAGGCCGTGCCTATGGGAGACGG    995

BSNT_05362___   1038 CAGCAACATCAAATTAACGCTTTACAAGTGGCTGACGCCAAATGGAAACT   1087
                     .||||||||.|||||.|||||||||||.||||||||.||.||.||.||.|
RBAM_032380__    996 GAGCAACATTAAATTGACGCTTTACAAATGGCTGACACCGAAAGGCAATT   1045

BSNT_05362___   1088 GGATTCATAAGAAAGGAATTGAACCGACCATTGCGATTAAGCAGCCCGAT   1137
                     ||||.||.||.|||||.||||..|||||.|||||..|.|..|||||.|||
RBAM_032380__   1046 GGATCCACAAAAAAGGCATTGCTCCGACAATTGCTGTGAGCCAGCCGGAT   1095

BSNT_05362___   1138 TATTTTTCCGCCGGGCCTTTACAGCTGAAAGAGCCGCTTAAAGTGGACAT   1187
                     ||||||.|.||.||.||..|.|||||||||.||||||||.|....||.||
RBAM_032380__   1096 TATTTTGCGGCGGGACCGCTTCAGCTGAAACAGCCGCTTCAGCCTGATAT   1145

BSNT_05362___   1188 GAACAATGAAGACGTCAAGCATGCGCAGGTATTGTTAAAAGGTCTCAGCT   1237
                     |||||..|..||.||||||||.||.||..|..||.|.|||||.||..|||
RBAM_032380__   1146 GAACAGCGCGGATGTCAAGCACGCTCAAATCCTGCTGAAAGGCCTAGGCT   1195

BSNT_05362___   1238 TTGATCCGGGACGTGAGGATGGCTATTTCAGCAAAGAC-ATGAAAAAAGC   1286
                     |.||.|||||..|.|..||.||||||||||||||| || |||||||||||
RBAM_032380__   1196 TCGACCCGGGCAGAGCAGACGGCTATTTCAGCAAA-ACAATGAAAAAAGC   1244

BSNT_05362___   1287 GGTTATGGCTTTTCAGGATCAAAACAAGCTGAATAAAAC--CGGT--GTG   1332
                     .|||.||||.|||||.||.|...||||.||..|||||||  ||||  .||
RBAM_032380__   1245 CGTTCTGGCGTTTCAAGACCGGTACAAACTTGATAAAACAGCGGTCATTG   1294

BSNT_05362___   1333 AT----CGACACTCGCACTGCAGAGACATTAAACCGGCAGAT---AGAAA   1375
                     ||    .||||        ||.||.|.|.|.||.|.||.|||   .|||.
RBAM_032380__   1295 ATAAAAAGACA--------GCGGAAAAAATGAATCAGCTGATGAATGAAC   1336

BSNT_05362___   1376 AGAAAAAATCAGATGAAAAAAATGATTTGCAGCTTCAAACAGCATTGAAA   1425
                     ||   |||||.||.||||||||||||||.|||||.||||..||.||.|||
RBAM_032380__   1337 AG---AAATCTGACGAAAAAAATGATTTACAGCTGCAAATGGCGTTAAAA   1383

BSNT_05362___   1426 TCATTATTTGTCAATTAA   1443
                     |||||||||||.||.|||
RBAM_032380__   1384 TCATTATTTGTAAAATAA   1401


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