Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05362 and RBAM_032380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05362___yvjB.1.9828.seq
# -bsequence dna-align/RBAM_032380___yvjB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05362___yvjB-RBAM_032380___yvjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05362___yvjB-RBAM_032380___yvjB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05362___yvjB
# 2: RBAM_032380___yvjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1468
# Identity: 1075/1468 (73.2%)
# Similarity: 1075/1468 (73.2%)
# Gaps: 92/1468 ( 6.3%)
# Score: 3897.0
#
#
#=======================================
BSNT_05362___ 1 ATGAATCAAAAAATAATGGCTGTGATAGCAGCAGGGAGCATGCTGTTCGG 50
|||||.||.|||||.||.||.||||||||.||.|..|||||..|||.|||
RBAM_032380__ 1 ATGAAGCAGAAAATGATCGCAGTGATAGCGGCCGTCAGCATCATGTGCGG 50
BSNT_05362___ 51 AGGCGCCGGTGT-ATAT----GCGGGAAT-CAACCTGCTTGAGATGGATA 94
.||.|| | |||| |.||.|.| ||.|| || ||..||
RBAM_032380__ 51 CGGAGC-----TCATATTGCCGGGGCAGTACAGCC-----GA-ATTCAT- 88
BSNT_05362___ 95 AGCCCCAGACTGCAGCAGTTCCCGCGACGGCACAAGCTGACTCTGAACGG 144
||||| ||||.| |.|||| |||
RBAM_032380__ 89 -----CAGAC-GCAGAA--------------AGAAGC----------CGG 108
BSNT_05362___ 145 GATAAAGCTATGGACAAAATCGAAAAAGCGTATGAGTTAATTTCGAATGA 194
||.|||||.||||||||||||||.||||||.|.||.|||||.||
RBAM_032380__ 109 ------GCAATGGAAAAAATCGAAAAAGCTTATGAGCTGATCTCGAACGA 152
BSNT_05362___ 195 GTACGTAGAAAAAGTAGATAGAGAAAAGCTGCTCGAGGGAGCCATCCAGG 244
.|||||.|||||.|||||||.|||||||||.||.||.|||||.||.||||
RBAM_032380__ 153 ATACGTGGAAAATGTAGATAAAGAAAAGCTTCTTGAAGGAGCGATTCAGG 202
BSNT_05362___ 245 GAATGCTGTCTACGCTAAATGATCCTTATTCTGTTTACATGGATAAGCAG 294
|.|||||||||||..||||.||.||||||||.|||||.|||||.||||||
RBAM_032380__ 203 GGATGCTGTCTACATTAAACGACCCTTATTCCGTTTATATGGACAAGCAG 252
BSNT_05362___ 295 ACAGCTAAGCAATTTTCTGATTCTCTTGATTCCTCATTTGAAGGCATCGG 344
||.||||||||.|||||.||||||||||||||.||.||.|||||.|||||
RBAM_032380__ 253 ACCGCTAAGCAGTTTTCCGATTCTCTTGATTCTTCTTTCGAAGGGATCGG 302
BSNT_05362___ 345 GGCTGAGGTTGGCATGGAAGACGGCAAAATTATTATTGTTTCCCCATTCA 394
.|||||.||.||.|||||.|||...|||||.|||||.||.||.||.||.|
RBAM_032380__ 303 CGCTGAAGTCGGTATGGAGGACAATAAAATCATTATCGTATCACCGTTTA 352
BSNT_05362___ 395 AGAAATCGCCAGCGGAAAAAGCCGGGTTGAAGCCTAATGATGAAATTATC 444
||.||||.||.|||||||||||.||..|.|||||.|||||||||||.|||
RBAM_032380__ 353 AGCAATCTCCGGCGGAAAAAGCGGGACTCAAGCCGAATGATGAAATCATC 402
BSNT_05362___ 445 AGCATCAATGGAGAATCGATGGCCGGCAAGGATTTAAACCACGCTGTGTT 494
|||||.||.||.||.||.|||..|||.||.|.|||||||.|.||.|||.|
RBAM_032380__ 403 AGCATAAACGGCGAGTCAATGAACGGGAAAGGTTTAAACGAAGCCGTGCT 452
BSNT_05362___ 495 AAAAATAAGAGGAAAAAAAGGGTCCAGCGTTTCAATGAAGATTCAGCGGC 544
.|||||.||||||||||||||.||.|..|||||.||.||.||.|||||.|
RBAM_032380__ 453 GAAAATCAGAGGAAAAAAAGGATCGAAGGTTTCTATTAAAATACAGCGTC 502
BSNT_05362___ 545 CTGGAACGAAGAAGCAGCTGTCATTCCGGATCAAGAGAGCTGAGATTCCA 594
|.||.||..|.||.|||||||||||||||||.||.|||||.||.||.||.
RBAM_032380__ 503 CGGGTACTGATAAACAGCTGTCATTCCGGATTAAAAGAGCGGAAATCCCG 552
BSNT_05362___ 595 CTCGAAACGGTTTTTGCAT----CAGAGAAAAAAGTACAG--GGGCATTC 638
||.|||||.||.|||||.| ||.|||| .||| ||.|||..
RBAM_032380__ 553 CTTGAAACCGTATTTGCTTCCCGCAAAGAA------TCAGGCGGTCATCA 596
BSNT_05362___ 639 TGTCGGATATATTGCCATCTCTACTTTTTCTGAGCACACCGCAGAGGATT 688
||||||.||.||.|.|||.||.||.|||||.|||||.|||||..||||.|
RBAM_032380__ 597 TGTCGGCTACATCGGCATATCGACATTTTCCGAGCATACCGCCCAGGACT 646
BSNT_05362___ 689 TTGCAAAAGCGCTGAGGGAGCTTGAGAAAAAAGAAATAGAAGGACTTGTC 738
|.||....|||||||...|||||||.|||.|||..||.||.||.||.|||
RBAM_032380__ 647 TCGCCGCGGCGCTGAAAAAGCTTGAAAAACAAGGGATTGACGGTCTCGTC 696
BSNT_05362___ 739 ATTGATGTACGCGGCAACCCGGGCGGATATCTTCAAAGTGTGGAAGAAAT 788
.||||||||.|.||.||.||.|||||.||.||||||||.||.|||.||||
RBAM_032380__ 697 CTTGATGTAAGAGGGAATCCCGGCGGCTACCTTCAAAGCGTTGAACAAAT 746
BSNT_05362___ 789 TCTTAAGCATTTCGTTACAAAGGATCA-GCCGTATATTCAGATTGCTGAA 837
|.|.|||||||||.|.|||||.|| || |||||||||.||.|||||.||.
RBAM_032380__ 747 TTTAAAGCATTTCATCACAAAAGA-CATGCCGTATATCCAAATTGCGGAG 795
BSNT_05362___ 838 CGCAATGGGGATAAAAAACGTTATTTTTCAACATTGACCCATAAAAAAGC 887
||.||.||.||||||||.|..|||||.|||||.||.|..|||||.||..|
RBAM_032380__ 796 CGTAACGGCGATAAAAAGCAATATTTCTCAACCTTAAAACATAAGAAGCC 845
BSNT_05362___ 888 GTACCCTGTCAATGTGATTACGGATAAAGGAAGTGCCTCTGCATCAGAAA 937
|||.||.||||||||.|||||||||||||||||.|||||.||.|||||||
RBAM_032380__ 846 GTATCCCGTCAATGTCATTACGGATAAAGGAAGCGCCTCCGCTTCAGAAA 895
BSNT_05362___ 938 TTCTTGCCGGCGCATTAAAGGAAGCTGGCCATTATGATGTTGTAGGCGAT 987
|||||||.||.||.|||||.|||||.||.||||||||.|||||.||.||.
RBAM_032380__ 896 TTCTTGCGGGTGCGTTAAAAGAAGCGGGACATTATGACGTTGTCGGTGAC 945
BSNT_05362___ 988 ACGTCTTTTGGAAAGGGAACGGTTCAACAGGCTGTGCCAATGGGGGACGG 1037
||.|||||.||.||.|||||||||||.|||||.|||||.|||||.|||||
RBAM_032380__ 946 ACTTCTTTCGGTAAAGGAACGGTTCAGCAGGCCGTGCCTATGGGAGACGG 995
BSNT_05362___ 1038 CAGCAACATCAAATTAACGCTTTACAAGTGGCTGACGCCAAATGGAAACT 1087
.||||||||.|||||.|||||||||||.||||||||.||.||.||.||.|
RBAM_032380__ 996 GAGCAACATTAAATTGACGCTTTACAAATGGCTGACACCGAAAGGCAATT 1045
BSNT_05362___ 1088 GGATTCATAAGAAAGGAATTGAACCGACCATTGCGATTAAGCAGCCCGAT 1137
||||.||.||.|||||.||||..|||||.|||||..|.|..|||||.|||
RBAM_032380__ 1046 GGATCCACAAAAAAGGCATTGCTCCGACAATTGCTGTGAGCCAGCCGGAT 1095
BSNT_05362___ 1138 TATTTTTCCGCCGGGCCTTTACAGCTGAAAGAGCCGCTTAAAGTGGACAT 1187
||||||.|.||.||.||..|.|||||||||.||||||||.|....||.||
RBAM_032380__ 1096 TATTTTGCGGCGGGACCGCTTCAGCTGAAACAGCCGCTTCAGCCTGATAT 1145
BSNT_05362___ 1188 GAACAATGAAGACGTCAAGCATGCGCAGGTATTGTTAAAAGGTCTCAGCT 1237
|||||..|..||.||||||||.||.||..|..||.|.|||||.||..|||
RBAM_032380__ 1146 GAACAGCGCGGATGTCAAGCACGCTCAAATCCTGCTGAAAGGCCTAGGCT 1195
BSNT_05362___ 1238 TTGATCCGGGACGTGAGGATGGCTATTTCAGCAAAGAC-ATGAAAAAAGC 1286
|.||.|||||..|.|..||.||||||||||||||| || |||||||||||
RBAM_032380__ 1196 TCGACCCGGGCAGAGCAGACGGCTATTTCAGCAAA-ACAATGAAAAAAGC 1244
BSNT_05362___ 1287 GGTTATGGCTTTTCAGGATCAAAACAAGCTGAATAAAAC--CGGT--GTG 1332
.|||.||||.|||||.||.|...||||.||..||||||| |||| .||
RBAM_032380__ 1245 CGTTCTGGCGTTTCAAGACCGGTACAAACTTGATAAAACAGCGGTCATTG 1294
BSNT_05362___ 1333 AT----CGACACTCGCACTGCAGAGACATTAAACCGGCAGAT---AGAAA 1375
|| .|||| ||.||.|.|.|.||.|.||.||| .|||.
RBAM_032380__ 1295 ATAAAAAGACA--------GCGGAAAAAATGAATCAGCTGATGAATGAAC 1336
BSNT_05362___ 1376 AGAAAAAATCAGATGAAAAAAATGATTTGCAGCTTCAAACAGCATTGAAA 1425
|| |||||.||.||||||||||||||.|||||.||||..||.||.|||
RBAM_032380__ 1337 AG---AAATCTGACGAAAAAAATGATTTACAGCTGCAAATGGCGTTAAAA 1383
BSNT_05362___ 1426 TCATTATTTGTCAATTAA 1443
|||||||||||.||.|||
RBAM_032380__ 1384 TCATTATTTGTAAAATAA 1401
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