Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05360 and RBAM_032360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05360___minJ.1.9828.seq
# -bsequence dna-align/RBAM_032360___yvjD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05360___minJ-RBAM_032360___yvjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05360___minJ-RBAM_032360___yvjD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05360___minJ
# 2: RBAM_032360___yvjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1221
# Identity: 867/1221 (71.0%)
# Similarity: 867/1221 (71.0%)
# Gaps: 57/1221 ( 4.7%)
# Score: 2890.5
#
#
#=======================================
BSNT_05360___ 1 GTGTCTGTTCAATGGGGAATTGAACTGTTAAAAAG-CGCGGGCTTGTTCT 49
.|||||||||||||||||||||||||..|.||||| ..|||.| ||||.|
RBAM_032360__ 1 ATGTCTGTTCAATGGGGAATTGAACTTCTGAAAAGTATCGGTC-TGTTTT 49
BSNT_05360___ 50 TCTTACACCCGCTTTTCTGGTTTTTTATCATCATAACCCTGGCTTTCGGC 99
|.||.||||||.|.||.|||||||||||||||||||..||.||.|.|||.
RBAM_032360__ 50 TTTTGCACCCGATGTTTTGGTTTTTTATCATCATAAGTCTCGCCTGCGGA 99
BSNT_05360___ 100 TATGTAAGAATCAAACGGGAACGAAAAACCTTTCATACAAGAATAGCAGA 149
|||.|..|.||.|||||.|||||..|.||.||||||||||.|||.|||||
RBAM_032360__ 100 TATTTGCGGATTAAACGTGAACGCCATACGTTTCATACAAAAATCGCAGA 149
BSNT_05360___ 150 TATTTATGATGATCTGAAATTTACATATACAAAGGGACTGATTCCAGGTC 199
|||.|||||.||.||.|..||||||||.|.|||.|||||.||.||.|||.
RBAM_032360__ 150 TATGTATGACGAGCTTATCTTTACATACATAAAAGGACTTATACCGGGTA 199
BSNT_05360___ 200 TTCTTTTGTC---AGTTATTTTAGGTGGACTCGGAATATCGATTCCTCTC 246
|||||.|.|| | ||||||| .||||||.|||||.||||||||..||
RBAM_032360__ 200 TTCTTCTCTCCATA-TTATTTT--TTGGACTGGGAATTTCGATTCCATTC 246
BSNT_05360___ 247 GGTTTACTTGCGATTATTGCCGTTATCACTGCAGCGGCAGCGTTCACTCT 296
|||.|.||.|..||.||.||.|...|.||.||...|||..||.|.|| .|
RBAM_032360__ 247 GGTCTTCTCGGCATAATCGCGGCCGTGACGGCTTTGGCTTCGCTGAC-GT 295
BSNT_05360___ 297 TCGCGCA--AACTGGATGTCTGCTGCATATATCGTCAGTGTGAGTATGCT 344
|| ||.| ||.|||.||||..|.||.|||||.|||||.|...|.|||.|
RBAM_032360__ 296 TC-CGTATGAATTGGCTGTCATCAGCTTATATTGTCAGCGCCGGCATGTT 344
BSNT_05360___ 345 GATAGGTTTTGGACTGCAAATATA-TCAGGCGGAGCCCTTCCTAGAGAGA 393
.||.|..|||...||.| |.|||| .||..|.|.|||.||....||..|.
RBAM_032360__ 345 CATTGCGTTTATCCTTC-AGTATACCCACACAGTGCCGTTTGCGGATCGG 393
BSNT_05360___ 394 TTTCCGCAAGGATTTGCAGTTG--TTTGGC--CGGCTGTGGCTGTGTTTC 439
||||||||.|.|||.|..| || ||.||| |||| |||.||||||.
RBAM_032360__ 394 TTTCCGCAGGCATTCGGCG-TGAATTGGGCATCGGC---GGCCGTGTTTA 439
BSNT_05360___ 440 TAGG--TTTGCTGATTATCACTGAAGGAGCGGTTGCTTATCGTTCTGCGC 487
|.|| ||| ||||||||||.||.|||||||.||||||.|||||.||||
RBAM_032360__ 440 TGGGCCTTT--TGATTATCACGGAGGGAGCGGCTGCTTACCGTTCAGCGC 487
BSNT_05360___ 488 ATGTGAGAACATCACCGGCACTTGTCGTAAGCAGCCGCGGTTTGCCGATC 537
|..|||.||||||.|||||.||||||||.||||||.|.||..||||.|||
RBAM_032360__ 488 ACCTGAAAACATCTCCGGCGCTTGTCGTCAGCAGCAGAGGCCTGCCCATC 537
BSNT_05360___ 538 GGACAGCAGCTGGCAAACCGGGTTTGGCTTTTGCCGCTGTTCCTTCTCGT 587
||.|..||..||||.||.||.|..|||||..|.|||||.|||.|..|.||
RBAM_032360__ 538 GGCCGACAATTGGCGAATCGCGCATGGCTGCTTCCGCTTTTCTTATTGGT 587
BSNT_05360___ 588 GCCCGGTAATGGTTTAGAATCGCACCTTAGCTGGTGGCCCGTGTTTACGG 637
|||.||.|..||..|.||.||.||||||...||||||||.||.|||||.|
RBAM_032360__ 588 GCCGGGCAGCGGGCTTGAGTCACACCTTTCTTGGTGGCCTGTCTTTACCG 637
BSNT_05360___ 638 TTCCCGGCGGCTCATTCCATTTTCTATGGATTCCTTACTTTGTCGGATTT 687
|.||.||||||||.||||||||..|.|||||||||||..|.|.|||.||.
RBAM_032360__ 638 TGCCGGGCGGCTCTTTCCATTTGATCTGGATTCCTTATATCGCCGGCTTC 687
BSNT_05360___ 688 GGACAAAGGGTACAGGGATCGCTGCCTGAAACGAGTATAAGGATCACAGC 737
|||||..|.||.|||||.||.||.||.|||...||.||||||||.||.||
RBAM_032360__ 688 GGACAGCGTGTGCAGGGGTCACTTCCGGAAGTCAGCATAAGGATAACGGC 737
BSNT_05360___ 738 GAAACGCGTTTGT----ATTCTCGGTCTTGCCGTCGCAGTTCTCGGTGCA 783
|||||| ||| ||||||||..||..||||.|.|...||||.|||
RBAM_032360__ 738 GAAACG----TGTCATGATTCTCGGGGTTATCGTCACCGCATTCGGGGCA 783
BSNT_05360___ 784 GCGAGCTTACTGTGGACGCCGCTTGCAGGTGCAGCGGTCTGTACTGCTTT 833
|||..|.|...||||||.||||||||.||.||.||.|..||||.|||..|
RBAM_032360__ 784 GCGGCCCTTTGGTGGACTCCGCTTGCCGGAGCTGCCGCTTGTATTGCGGT 833
BSNT_05360___ 834 GTTAGG--GCGTATTTTTCTGTCCATAAAGCAAAGAG--TGAATGATAAC 879
|.|.|| ||.|.|||||.| |||.||| |.||.| ||||.||||||
RBAM_032360__ 834 GCTCGGACGCCTGTTTTTAT---CATTAAG-ACAGCGGCTGAACGATAAC 879
BSNT_05360___ 880 GCGGCTCCGTTTTATTTCTCGAAAAGGGATCAGGGCTTAATGGTGCTTGG 929
||||||||||||||||||||.||..||||||||||||||||||||||.||
RBAM_032360__ 880 GCGGCTCCGTTTTATTTCTCTAAGCGGGATCAGGGCTTAATGGTGCTCGG 929
BSNT_05360___ 930 GATTATCCCCAATACGCCGGCTGAGGATCTGGAATTGAAAATCGGGGAAA 979
.||.||.||.|||||.||.||.||.|||||.||..||||.|||||.||.|
RBAM_032360__ 930 CATCATTCCGAATACACCCGCGGACGATCTTGAGCTGAAGATCGGTGAGA 979
BSNT_05360___ 980 TCATAACGAAAGTCAATGGTATACCGGTTAAGAACGTTTCTGATTTCTAT 1029
|.||.||||||||.||.||.||.||.||.|||.|.||.||.|||||.|||
RBAM_032360__ 980 TTATTACGAAAGTAAACGGCATCCCCGTGAAGCATGTATCGGATTTTTAT 1029
BSNT_05360___ 1030 GAAGCGCTCCAGCATAACCGTGCATACGTGAAGCTTGAAATTATCGGTTT 1079
|||||.||.||..|.|||||.||||..||.||..|.||.||.|||||..|
RBAM_032360__ 1030 GAAGCACTTCAAAAAAACCGCGCATTTGTAAAAATGGAGATCATCGGCCT 1079
BSNT_05360___ 1080 GAATGGAGAAATTCGTTTTGACCAGCGAGCTTCTTATGAAGGAGAACATC 1129
|||.||.||.||.||.|||||.|||||.||.||.||||||||.|||||||
RBAM_032360__ 1080 GAACGGTGAGATCCGGTTTGATCAGCGCGCGTCCTATGAAGGCGAACATC 1129
BSNT_05360___ 1130 ATGAATTGGGCATCCTCTTCGTAAAGGATGACCGTGAAGACGAAG----- 1174
|||||||.||.||..|.|||||..|||||||.|..||..||||||
RBAM_032360__ 1130 ATGAATTAGGTATTTTATTCGTGCAGGATGAACACGAGCACGAAGAAATG 1179
BSNT_05360___ 1175 -CAGCCGCTTCTGGATCATAA 1194
|||| ||.||||
RBAM_032360__ 1180 ACAGC---------ATTATAA 1191
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