Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05356 and RBAM_032340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:49
# Commandline: needle
# -asequence dna-align/BSNT_05356___yvkB.1.9828.seq
# -bsequence dna-align/RBAM_032340___yvkB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05356___yvkB-RBAM_032340___yvkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05356___yvkB-RBAM_032340___yvkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05356___yvkB
# 2: RBAM_032340___yvkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity: 402/685 (58.7%)
# Similarity: 402/685 (58.7%)
# Gaps: 173/685 (25.3%)
# Score: 1186.5
#
#
#=======================================
BSNT_05356___ 1 ---TTGAGACCGACAAACAAGAGAATCCTTGATGCTGCCATGCAGCTGCT 47
||||||.||||.|||||||||||..||||.||.||.|||.|.|||.|
RBAM_032340__ 1 ATGTTGAGAACGACGAACAAGAGAATTATTGACGCCGCGATGAATCTGAT 50
BSNT_05356___ 48 CGTCAAAAAAGGATATCGCGCAACAACTACAAAAGAAATTGCAGAAAAAG 97
|.||.||||||||||.||||||.|.||.|||||||||||.||||||||||
RBAM_032340__ 51 CATCCAAAAAGGATACCGCGCAGCGACAACAAAAGAAATCGCAGAAAAAG 100
BSNT_05356___ 98 CAAATGTAAGTGAAGCGACGATTTTCAGGAACTTTAAAAACAAACAAGGA 147
||||.|||||.|||||.|||||||||.|.||.||||||||||||||||||
RBAM_032340__ 101 CAAAAGTAAGCGAAGCAACGATTTTCCGTAATTTTAAAAACAAACAAGGA 150
BSNT_05356___ 148 CTAGTTGAGGCTTTGCTTTCTCAGCATTCTTCAAACAGAGGC-------- 189
.||.|..|.||..||.||...||| ||||.||
RBAM_032340__ 151 TTAATGAAAGCCATGATTGAACAG-----------CAGACGCCGGTTCCG 189
BSNT_05356___ 190 ---AGCATTTTGGA--ACAAA--CAGAAGGGGATTTGTACAAAGACCTGC 232
||||| || ||.|| |.|||||.|||.||||..|.||.||.|
RBAM_032340__ 190 GAAAGCAT----GATCACTAAGGCGGAAGGCGATCTGTATGAGGATCTTC 235
BSNT_05356___ 233 TTCATATCG----GAACCTGTCTCTTGGAGGAGCTCGAACATAGAAAAGA 278
|||||.||| ||.||| |||| .||.|..|.|||||.|.||||||
RBAM_032340__ 236 TTCATTTCGCCGCGACCCT---TCTT-CAGCAATTGGAACAAAAAAAAGA 281
BSNT_05356___ 279 TATCATTAAAATCAGCTTTCGTGAACCGG--CCAT--------GT--TTC 316
..|..|....|||.||.|.||.||||||| |.|| || |.|
RBAM_032340__ 282 AGTGTTCCGCATCTGCCTGCGCGAACCGGAACTATTCGAAGACGTCCTGC 331
BSNT_05356___ 317 AGGATGTCATTAACCACGTCACTGAATATCCCCAATCTATGAAACAGC-- 364
||||| ||| ||| |.||||||.|||||..|||||.|||
RBAM_032340__ 332 AGGAT---ATT------GTC---GTATATCCGCAATCCGTGAAAAAGCAT 369
BSNT_05356___ 365 -TATTGGTTGA--TTA------TCTCAAAACAATGGGTGAGAAAGGGGTT 405
||.|.|||.| ||| |..|||| ||.||| |
RBAM_032340__ 370 TTAATCGTTTACTTTAAGGAGCTGACAAA---------GAAAAA-----T 405
BSNT_05356___ 406 AT-------TCAGACAG-GAAATGAAGCGGAGCATGCCGACGTGTTCATG 447
|| .|.|.||| ||| ||||| ..||||.|||||.||.|||
RBAM_032340__ 406 ATGATAAGCCCCGGCAGCGAA--GAAGC---TAATGCAGACGTCTTTATG 450
BSNT_05356___ 448 TCGATTATCTTCGGTTATTTCATTCACCGTCTCCA-CTTAGGAGACCGGG 496
.||||.||.|||||||||||.||.|||||.||.|| ||..||| |..|.|
RBAM_032340__ 451 ACGATGATTTTCGGTTATTTTATACACCGGCTGCAGCTGGGGA-AAAGAG 499
BSNT_05356___ 497 TCATATCAATGCCCC--AGGAAAAAATGCTGGAGCACAGCAC--AGCTCT 542
|| ||||.|..|.| ||||||..||||||.|.|||||||| ||
RBAM_032340__ 500 TC--ATCACTCTCTCTGAGGAAACGATGCTGAAACACAGCACTGAG---- 543
BSNT_05356___ 543 ATTTGTC---AAAGGAA----------------TTTCTGCT--------G 565
|||| || |||||.| ||.|.||| |
RBAM_032340__ 544 ATTT-TCATGAAAGGCATTACCGGCCGGTCATTTTCCGGCTCCAAGGAGG 592
BSNT_05356___ 566 ATTAA------------------------------ 570
||.||
RBAM_032340__ 593 ATGAAGGATGGGTTCAAAGAAAGAATGGGCGCTGA 627
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