Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05356 and RBAM_032340

See Amino acid alignment / Visit BSNT_05356 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:49
# Commandline: needle
#    -asequence dna-align/BSNT_05356___yvkB.1.9828.seq
#    -bsequence dna-align/RBAM_032340___yvkB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05356___yvkB-RBAM_032340___yvkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05356___yvkB-RBAM_032340___yvkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05356___yvkB
# 2: RBAM_032340___yvkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity:     402/685 (58.7%)
# Similarity:   402/685 (58.7%)
# Gaps:         173/685 (25.3%)
# Score: 1186.5
# 
#
#=======================================

BSNT_05356___      1 ---TTGAGACCGACAAACAAGAGAATCCTTGATGCTGCCATGCAGCTGCT     47
                        ||||||.||||.|||||||||||..||||.||.||.|||.|.|||.|
RBAM_032340__      1 ATGTTGAGAACGACGAACAAGAGAATTATTGACGCCGCGATGAATCTGAT     50

BSNT_05356___     48 CGTCAAAAAAGGATATCGCGCAACAACTACAAAAGAAATTGCAGAAAAAG     97
                     |.||.||||||||||.||||||.|.||.|||||||||||.||||||||||
RBAM_032340__     51 CATCCAAAAAGGATACCGCGCAGCGACAACAAAAGAAATCGCAGAAAAAG    100

BSNT_05356___     98 CAAATGTAAGTGAAGCGACGATTTTCAGGAACTTTAAAAACAAACAAGGA    147
                     ||||.|||||.|||||.|||||||||.|.||.||||||||||||||||||
RBAM_032340__    101 CAAAAGTAAGCGAAGCAACGATTTTCCGTAATTTTAAAAACAAACAAGGA    150

BSNT_05356___    148 CTAGTTGAGGCTTTGCTTTCTCAGCATTCTTCAAACAGAGGC--------    189
                     .||.|..|.||..||.||...|||           ||||.||        
RBAM_032340__    151 TTAATGAAAGCCATGATTGAACAG-----------CAGACGCCGGTTCCG    189

BSNT_05356___    190 ---AGCATTTTGGA--ACAAA--CAGAAGGGGATTTGTACAAAGACCTGC    232
                        |||||    ||  ||.||  |.|||||.|||.||||..|.||.||.|
RBAM_032340__    190 GAAAGCAT----GATCACTAAGGCGGAAGGCGATCTGTATGAGGATCTTC    235

BSNT_05356___    233 TTCATATCG----GAACCTGTCTCTTGGAGGAGCTCGAACATAGAAAAGA    278
                     |||||.|||    ||.|||   |||| .||.|..|.|||||.|.||||||
RBAM_032340__    236 TTCATTTCGCCGCGACCCT---TCTT-CAGCAATTGGAACAAAAAAAAGA    281

BSNT_05356___    279 TATCATTAAAATCAGCTTTCGTGAACCGG--CCAT--------GT--TTC    316
                     ..|..|....|||.||.|.||.|||||||  |.||        ||  |.|
RBAM_032340__    282 AGTGTTCCGCATCTGCCTGCGCGAACCGGAACTATTCGAAGACGTCCTGC    331

BSNT_05356___    317 AGGATGTCATTAACCACGTCACTGAATATCCCCAATCTATGAAACAGC--    364
                     |||||   |||      |||   |.||||||.|||||..|||||.|||  
RBAM_032340__    332 AGGAT---ATT------GTC---GTATATCCGCAATCCGTGAAAAAGCAT    369

BSNT_05356___    365 -TATTGGTTGA--TTA------TCTCAAAACAATGGGTGAGAAAGGGGTT    405
                      ||.|.|||.|  |||      |..||||         ||.|||     |
RBAM_032340__    370 TTAATCGTTTACTTTAAGGAGCTGACAAA---------GAAAAA-----T    405

BSNT_05356___    406 AT-------TCAGACAG-GAAATGAAGCGGAGCATGCCGACGTGTTCATG    447
                     ||       .|.|.||| |||  |||||   ..||||.|||||.||.|||
RBAM_032340__    406 ATGATAAGCCCCGGCAGCGAA--GAAGC---TAATGCAGACGTCTTTATG    450

BSNT_05356___    448 TCGATTATCTTCGGTTATTTCATTCACCGTCTCCA-CTTAGGAGACCGGG    496
                     .||||.||.|||||||||||.||.|||||.||.|| ||..||| |..|.|
RBAM_032340__    451 ACGATGATTTTCGGTTATTTTATACACCGGCTGCAGCTGGGGA-AAAGAG    499

BSNT_05356___    497 TCATATCAATGCCCC--AGGAAAAAATGCTGGAGCACAGCAC--AGCTCT    542
                     ||  ||||.|..|.|  ||||||..||||||.|.||||||||  ||    
RBAM_032340__    500 TC--ATCACTCTCTCTGAGGAAACGATGCTGAAACACAGCACTGAG----    543

BSNT_05356___    543 ATTTGTC---AAAGGAA----------------TTTCTGCT--------G    565
                     |||| ||   |||||.|                ||.|.|||        |
RBAM_032340__    544 ATTT-TCATGAAAGGCATTACCGGCCGGTCATTTTCCGGCTCCAAGGAGG    592

BSNT_05356___    566 ATTAA------------------------------    570
                     ||.||                              
RBAM_032340__    593 ATGAAGGATGGGTTCAAAGAAAGAATGGGCGCTGA    627


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