Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05348 and RBAM_032300
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:48
# Commandline: needle
# -asequence dna-align/BSNT_05348___uvrA.1.9828.seq
# -bsequence dna-align/RBAM_032300___uvrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05348___uvrA-RBAM_032300___uvrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05348___uvrA-RBAM_032300___uvrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05348___uvrA
# 2: RBAM_032300___uvrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2882
# Identity: 2332/2882 (80.9%)
# Similarity: 2332/2882 (80.9%)
# Gaps: 16/2882 ( 0.6%)
# Score: 9459.0
#
#
#=======================================
BSNT_05348___ 1 ATGGCTATGGATCGGATAGAGGTGAAGGGAGCCAGGGCGCATAACCTGAA 50
|||||.||.||.|||||.||||||||.||.||.||||||||.||..|.||
RBAM_032300__ 1 ATGGCAATTGACCGGATCGAGGTGAAAGGCGCAAGGGCGCACAATTTAAA 50
BSNT_05348___ 51 AAATATAGATGTGACGATTCCGAGAGATCAGCTTGTCGTTGTCACGGGTT 100
|||.||.|||||.|||||||||.|.||||||||.|||||.||.|||||..
RBAM_032300__ 51 AAACATTGATGTAACGATTCCGCGGGATCAGCTCGTCGTCGTGACGGGGC 100
BSNT_05348___ 101 TGTCCGGATCAGGTAAATCCTCCCTTGCCTTTGACACGATATATGCTGAA 150
||||||||||.||.|||||.|||||||||||||||||.||.||.||.|||
RBAM_032300__ 101 TGTCCGGATCGGGAAAATCATCCCTTGCCTTTGACACCATTTACGCGGAA 150
BSNT_05348___ 151 GGACAGAGACGGTATGTCGAGTCGCTGTCTGCCTATGCCCGCCAGTTTTT 200
||||||||.||||||||.||.|||||.|||||||||||.|||||.|||||
RBAM_032300__ 151 GGACAGAGGCGGTATGTTGAATCGCTTTCTGCCTATGCGCGCCAATTTTT 200
BSNT_05348___ 201 AGGGCAAATGGATAAGCCGGATGTGGATGCAATTGAGGGGCTCTCTCCCG 250
||||||.||||||||||||||.||.|||||.||.||.|||||.|||||.|
RBAM_032300__ 201 AGGGCAGATGGATAAGCCGGACGTTGATGCGATCGAAGGGCTTTCTCCGG 250
BSNT_05348___ 251 CCATCAGCATTGATCAGAAAACAACGAGCCGCAATCCGAGGTCTACTGTC 300
|.|||||||||||.||||||||.||.||||||||||||.||||.||.|||
RBAM_032300__ 251 CGATCAGCATTGACCAGAAAACGACAAGCCGCAATCCGCGGTCAACCGTC 300
BSNT_05348___ 301 GGTACGGTAACTGAGATTTATGATTATCTGCGTCTTTTATATGCGAGAGT 350
||.||||||||.|||||.|||||||||||.||.||..|.||.||||||||
RBAM_032300__ 301 GGAACGGTAACGGAGATCTATGATTATCTCCGGCTGCTGTACGCGAGAGT 350
BSNT_05348___ 351 AGGGAAGCCTCATTGTCCGGAACACGGAATTGAGATTACATCCCAGACCA 400
.|||||.||.||.||.|||||||||||.|||||.|||||.||.||.||.|
RBAM_032300__ 351 CGGGAAACCGCACTGCCCGGAACACGGCATTGAAATTACGTCGCAAACGA 400
BSNT_05348___ 401 TCGAGCAAATGGTGGACAGAATTCTGGAATACCCGGAACGGACGAAGCTT 450
|.||.||.|||||.|||.|.|||||.|||||.|||||.||||||||||||
RBAM_032300__ 401 TTGAACAGATGGTTGACCGGATTCTTGAATATCCGGAGCGGACGAAGCTT 450
BSNT_05348___ 451 CAGGTGCTGGCGCCGATTGTATCGGGCCGAAAAGGCGCTCATGTCAAAGT 500
||.|||||.||||||||..|.||.|||.||||||||||.|||||||||||
RBAM_032300__ 451 CAAGTGCTTGCGCCGATCATCTCAGGCAGAAAAGGCGCCCATGTCAAAGT 500
BSNT_05348___ 501 GCTTGAACAGATTAGGAAACAAGGCTATGTCAGAGTCAGAATTGACGGCG 550
||||||.||.||.||.||.|||||.||.||.||.||..|.||||||||.|
RBAM_032300__ 501 GCTTGACCAAATCAGAAAGCAAGGTTACGTAAGGGTGCGGATTGACGGAG 550
BSNT_05348___ 551 AGATGGCTGAGCTTTCCGACGATATCGAATTAGAAAAGAACAAGAAGCAT 600
|.|||||.|||||||||||||||||.|||.|.|||||.|||||.||||||
RBAM_032300__ 551 AAATGGCCGAGCTTTCCGACGATATTGAACTTGAAAAAAACAAAAAGCAT 600
BSNT_05348___ 601 TCCATTGAGGTAGTCATTGACCGGATTGTCGTGAAAGAAGGCGTGGCAGC 650
||||||||.|||||||||||||||||||||||.||.|||||.||.||.||
RBAM_032300__ 601 TCCATTGAAGTAGTCATTGACCGGATTGTCGTCAAGGAAGGGGTTGCCGC 650
BSNT_05348___ 651 CCGGCTGTCAGATTCATTGGAAACGGCGCTTCGTTTAAGTGAAGGACGGG 700
||||||.||.||.|||.|||||||.|||||.||.|||.|.|||||.||.|
RBAM_032300__ 651 CCGGCTTTCCGACTCACTGGAAACCGCGCTCCGCTTAGGGGAAGGCCGTG 700
BSNT_05348___ 701 TTATGATCGATGTCATCGGTGAGGAAGAGCTGATGTTCAGCGAGCATCAT 750
|.|||||.||||||||||||.||||.|||||||||||||||||||||||.
RBAM_032300__ 701 TCATGATAGATGTCATCGGTCAGGAGGAGCTGATGTTCAGCGAGCATCAC 750
BSNT_05348___ 751 GCCTGTCCGCACTGCGGATTTTCAATTGGTGAACTTGAGCCGCGTCTGTT 800
||.|||||||..|||||.|||||.||.||.||.|||||.||.||.|||||
RBAM_032300__ 751 GCTTGTCCGCTGTGCGGTTTTTCTATCGGGGAGCTTGAACCCCGGCTGTT 800
BSNT_05348___ 801 TTCGTTTAACAGTCCGTTCGGGGCGTGTCCGACGTGTGACGGTCTCGGAA 850
|||.|||||||||||||||||.||.||||||||.||.|||||||||||..
RBAM_032300__ 801 TTCATTTAACAGTCCGTTCGGCGCCTGTCCGACTTGCGACGGTCTCGGCT 850
BSNT_05348___ 851 TGAAGCTTGAAGTGGATGCCGATCTTGTCATCCCCAATCAAGATTTGTCA 900
|||||||.||||||||..|.||.||.|||||||||||||..||..|||||
RBAM_032300__ 851 TGAAGCTGGAAGTGGACCCTGAGCTCGTCATCCCCAATCCCGAGCTGTCA 900
BSNT_05348___ 901 TTGAAGGAGAATGCGGTCGCCCCTTGGACACCGATCAGCTCACAATATTA 950
||.|||||..|.||..||||.||.|||||.||||||||.|||||||||||
RBAM_032300__ 901 TTAAAGGAACACGCCATCGCGCCGTGGACGCCGATCAGTTCACAATATTA 950
BSNT_05348___ 951 TCCTCAGCTGCTTGAGGCAGCCTGCACCCACTACGGGATTGATATGGATG 1000
|||.|||||||||.||||.|.||||..|||.|||||.|||||||||||..
RBAM_032300__ 951 TCCGCAGCTGCTTCAGGCGGTCTGCCGCCATTACGGCATTGATATGGAGA 1000
BSNT_05348___ 1001 TGCCGGTCAAAGATTTGCCGAAGCATCAACTGGATAAAGTGCTGTACGGC 1050
..|||||||||||..|||||||||||||.||.||||||||||||||||||
RBAM_032300__ 1001 CTCCGGTCAAAGACCTGCCGAAGCATCAGCTTGATAAAGTGCTGTACGGC 1050
BSNT_05348___ 1051 AGCGGAGATGACCTGATTTATTTCAGATATGAAAATGATTTTGGACAAAT 1100
|||||.|||||.|.|||.||.||.|.|||.||.||||||||.||||||.|
RBAM_032300__ 1051 AGCGGCGATGAACGGATCTACTTTAAATACGAGAATGATTTCGGACAAGT 1100
BSNT_05348___ 1101 CCGTGAAGGTGAAATTCAATTTGAAGGCGTATTGCGCAACATTGAAAGAC 1150
.||.|||..|||||||.||||||||||.||..|||||||.|||||.||||
RBAM_032300__ 1101 GCGCGAAAATGAAATTGAATTTGAAGGTGTGCTGCGCAATATTGAGAGAC 1150
BSNT_05348___ 1151 GCTATAAGGAGACAGGCTCTGATTTCATCCGTGAGCAGATGGAGCAGTAT 1200
|.||||||||||||.||||.||||..||||||||.||||||||||||||.
RBAM_032300__ 1151 GGTATAAGGAGACAAGCTCCGATTATATCCGTGAACAGATGGAGCAGTAC 1200
BSNT_05348___ 1201 ATGTCTCAGAAGTCTTGTCCGACGTGCAAAGGCTATCGGTTAAAGAAAGA 1250
|||||.|||||.||.||.|||||||||||||||||.|||.|.||||||||
RBAM_032300__ 1201 ATGTCACAGAAATCGTGCCCGACGTGCAAAGGCTACCGGCTGAAGAAAGA 1250
BSNT_05348___ 1251 GGCGCTTGCCGTACTGATTGACGGCCGCCACATCGGAAAAATTACCGAGC 1300
.|||||||||||..||.|..||||.|||||.|||||||..|||||.||||
RBAM_032300__ 1251 AGCGCTTGCCGTTTTGGTCAACGGGCGCCATATCGGAACCATTACGGAGC 1300
BSNT_05348___ 1301 TGTCTGTCGCCGACGCACTTGCCTTCTTTAAAAACCTTACCCTTTCTGAG 1350
|.|||||||.||||||.||||..||.||.||||||||.||.||.||||||
RBAM_032300__ 1301 TTTCTGTCGGCGACGCGCTTGAATTTTTCAAAAACCTGACGCTGTCTGAG 1350
BSNT_05348___ 1351 AAGGATATGCAGATCGCCAATTTGATTTTGCGCGAAATTGTGGAGCGCTT 1400
||.|||||||||||.|||.||||.|||||..|.||.|||||.|||||..|
RBAM_032300__ 1351 AAAGATATGCAGATTGCCGATTTAATTTTAAGAGAGATTGTAGAGCGGCT 1400
BSNT_05348___ 1401 AAGCTTTCTGGACAAAGTCGGCCTCGATTACCTGACATTGAGCAGGGCAG 1450
.|||||..|.||.|||||.||.||.|||||.|||||..|||||.||||.|
RBAM_032300__ 1401 CAGCTTCTTAGATAAAGTGGGTCTTGATTATCTGACGCTGAGCCGGGCGG 1450
BSNT_05348___ 1451 CGGGTACATTGTCCGGGGGAGAGGCGCAGCGCATCAGGCTGGCGACTCAA 1500
||||.||..||||.||.|||||.||.||||||||||||||.|||||.||.
RBAM_032300__ 1451 CGGGAACGCTGTCAGGCGGAGAAGCCCAGCGCATCAGGCTTGCGACGCAG 1500
BSNT_05348___ 1501 ATTGGCTCGCGCTTATCCGGTGTGCTTTATATTTTAGATGAGCCGTCTAT 1550
||.|||||.||.||.||.||.||.||.||||||.|.|||||||||||.||
RBAM_032300__ 1501 ATCGGCTCTCGTTTGTCTGGCGTCCTGTATATTCTTGATGAGCCGTCCAT 1550
BSNT_05348___ 1551 CGGTCTGCATCAGCGTGATAACGACCGCTTGATCAGCGCTCTGAAAAATA 1600
|||.||.||.||||||||.||.|||||..||||||||||.||||||||.|
RBAM_032300__ 1551 CGGCCTTCACCAGCGTGACAATGACCGTCTGATCAGCGCGCTGAAAAACA 1600
BSNT_05348___ 1601 TGAGAGACCTCGGGAACACGCTGATTGTTGTCGAACATGATGAGGACACG 1650
||||.||.|||||.|||||.||||||||.||.||.||||||||.||.|||
RBAM_032300__ 1601 TGAGGGATCTCGGCAACACACTGATTGTCGTTGAGCATGATGAAGATACG 1650
BSNT_05348___ 1651 ATGATGGCAGCAGATTATTTAATAGATATTGGACCGGGAGCCGGTATTCA 1700
||||||||.||.||||||||.||||||||.||.|||||.|||||||||||
RBAM_032300__ 1651 ATGATGGCTGCCGATTATTTGATAGATATCGGTCCGGGCGCCGGTATTCA 1700
BSNT_05348___ 1701 CGGCGGACAGGTGATATCTGCGGGTACGCCGGAAGAAGTGATGGAAGATC 1750
||||||.|..||.|||||.|||||.|||||.||||||||||||.|.|||.
RBAM_032300__ 1701 CGGCGGCCGCGTCATATCGGCGGGGACGCCAGAAGAAGTGATGAATGATG 1750
BSNT_05348___ 1751 CAAACTCATTAACGGGCAGCTATTTATCAGGGGAAAAGTTTATCCCATTG 1800
|..||||..|.||.||..|||||||.|||||||...|.||.|||||..||
RBAM_032300__ 1751 CGGACTCTCTGACCGGACGCTATTTGTCAGGGGCTCAATTCATCCCGATG 1800
BSNT_05348___ 1801 CCTCCTGAAAGAAGAAAGCCGGACGGACGTTACATTGAAATTAAAGGTGC 1850
|||||.||.|||||||||||.|||||.||.|.|||||||||.|||||.||
RBAM_032300__ 1801 CCTCCGGAGAGAAGAAAGCCTGACGGCCGGTTCATTGAAATCAAAGGCGC 1850
BSNT_05348___ 1851 TTCAGAAAACAACTTGAAAAAAGTGAATGCCAAGTTCCCGCTTGGGACGT 1900
|||||||||||||.|||||||||.|||.|||||.||||||||.||.||.|
RBAM_032300__ 1851 TTCAGAAAACAACCTGAAAAAAGCGAACGCCAAATTCCCGCTCGGCACTT 1900
BSNT_05348___ 1901 TTACAGCAGTTACAGGTGTTTCCGGTTCAGGGAAGAGTACACTCGTTAAT 1950
||||.||.||.||||||||.||||||||.||.||.||.||.||.||.|||
RBAM_032300__ 1901 TTACGGCGGTGACAGGTGTGTCCGGTTCCGGAAAAAGCACGCTTGTGAAT 1950
BSNT_05348___ 1951 GAAATTTTGCATAAGGCGCTGGCGCAAAAGCTTCATAAAGCGAAAGCGAA 2000
||||||.|||||||||||||.||||||||||||||||||||.||||||||
RBAM_032300__ 1951 GAAATTCTGCATAAGGCGCTTGCGCAAAAGCTTCATAAAGCCAAAGCGAA 2000
BSNT_05348___ 2001 GCCCGGCAGCCATAAAGAGATTAAAGGTTTGGATCATTTAGACAAAGTCA 2050
.||.||.|||||||||||.||.|||||..|.||.||..|.||.||.||.|
RBAM_032300__ 2001 ACCGGGAAGCCATAAAGAAATCAAAGGCCTTGACCACCTTGATAAGGTGA 2050
BSNT_05348___ 2051 TTGACATTGACCAGGCGCCAATTGGAAGAACGCCGAGATCCAACCCTGCG 2100
|.|||||.|||||||||||.||.||..|.||.||||||||.|||||.||.
RBAM_032300__ 2051 TCGACATCGACCAGGCGCCGATCGGCCGGACACCGAGATCAAACCCGGCA 2100
BSNT_05348___ 2101 ACATACACCGGTGTATTTGATGACATTCGTGATGTATTCGCGCAGACAAA 2150
||.||.||.||.||.||||||||.||.||.||||||||||||||||||||
RBAM_032300__ 2101 ACTTATACGGGCGTGTTTGATGATATCCGCGATGTATTCGCGCAGACAAA 2150
BSNT_05348___ 2151 TGAAGCGAAGGTCCGCGGCTATAAAAAAGGCCGTTTCAGCTTCAACGTGA 2200
||||||.|||||.||||||||||||||||||||.|||||.||.||.||.|
RBAM_032300__ 2151 TGAAGCAAAGGTGCGCGGCTATAAAAAAGGCCGGTTCAGTTTTAATGTAA 2200
BSNT_05348___ 2201 AGGGCGGACGATGTGAAGCCTGCCGCGGAGACGGGATTATTAAAATTGAA 2250
|.|||||.||.|||||.|||||||||||.|||||.||.||.||||||||.
RBAM_032300__ 2201 AAGGCGGGCGCTGTGAGGCCTGCCGCGGCGACGGCATCATCAAAATTGAG 2250
BSNT_05348___ 2251 ATGCACTTCCTTCCTGACGTATACGTTCCATGCGAGGTGTGTCACGGCAA 2300
|||||.||||||||||||||.|||||.||.||.||.|||||.||||||||
RBAM_032300__ 2251 ATGCATTTCCTTCCTGACGTGTACGTCCCGTGTGAAGTGTGCCACGGCAA 2300
BSNT_05348___ 2301 ACGCTATAACCGTGAAACGCTTGAAGTGACGTACAAAGGAAAAAGCATCT 2350
|||.||.|||||.||.||||||||.||.||.|||||||||||||||||.|
RBAM_032300__ 2301 ACGTTACAACCGGGAGACGCTTGAGGTCACATACAAAGGAAAAAGCATTT 2350
BSNT_05348___ 2351 CTGATGTGCTTGATATGACGGTTGAAGATGCTCTTCCTTTCTTTGAAAAT 2400
||||.||.||.|||||||||||.|||||||||||..||||||||||||||
RBAM_032300__ 2351 CTGACGTTCTGGATATGACGGTGGAAGATGCTCTGTCTTTCTTTGAAAAT 2400
BSNT_05348___ 2401 ATCCCGAAAATCAAACGCAAGCTCCAAACCCTTTATGATGTTGGTTTAGG 2450
|||||||||||||||||||||||.|||||.|||...|||||.||..|.||
RBAM_032300__ 2401 ATCCCGAAAATCAAACGCAAGCTTCAAACGCTTGCCGATGTCGGACTCGG 2450
BSNT_05348___ 2451 TTATATTACGCTCGGCCAGCCGGCGACGACCTTGTCAGGCGGAGAAGCGC 2500
.|||.|.||||||||.||||||||||||||..||||||||||||||||||
RBAM_032300__ 2451 GTATGTGACGCTCGGACAGCCGGCGACGACGCTGTCAGGCGGAGAAGCGC 2500
BSNT_05348___ 2501 AGCGCGTGAAGCTCGCGTCAGAGCTGCACAAACGCTCGACCGGACGCACG 2550
|||||||.|||||.||.||.||.|||||.||.||.||.||.||.||.|||
RBAM_032300__ 2501 AGCGCGTTAAGCTTGCTTCCGAACTGCATAAGCGTTCCACAGGCCGGACG 2550
BSNT_05348___ 2551 CTCTACATTTTAGATGAGCCGACGACAGGTTTGCATGTCGACGATATCGC 2600
||.||.|||.|.||.||.|||||||||||..|.||.||.||.||||||||
RBAM_032300__ 2551 CTGTATATTCTGGACGAACCGACGACAGGCCTCCACGTTGATGATATCGC 2600
BSNT_05348___ 2601 CAGGCTTCTTGTCGTGCTGCAACGGTTGGTAGACAACGGAGACACTGTAC 2650
.|||||..|.||.|||||.|||.|..|.||.||.|||||.||.||.||..
RBAM_032300__ 2601 AAGGCTATTGGTTGTGCTTCAAAGACTCGTCGATAACGGTGATACCGTTT 2650
BSNT_05348___ 2651 TGGTTATTGAGCACAACCTTGATATCATTAAGACGGCCGATTACATTGTG 2700
||||.|||||.|||||.||.||.||||||||.|||||.||.|||||.||.
RBAM_032300__ 2651 TGGTCATTGAACACAATCTCGACATCATTAAAACGGCGGACTACATCGTA 2700
BSNT_05348___ 2701 GATTTGGGCCCGGAAGGCGGAGCCGGGGGCGGAACCATTGTCGCGTCTGG 2750
||..||||.||.|||||||||||.||.|||||.||.||.||.||.||.||
RBAM_032300__ 2701 GACCTGGGACCTGAAGGCGGAGCGGGCGGCGGCACGATCGTAGCCTCCGG 2750
BSNT_05348___ 2751 AACGCCTGAGGAAATCACTGAAGTTGAAGAATCGTATACAGGCCGTTATT 2800
.||||||||.|||.|....|||||..|||||||.|||||.|||||.|||.
RBAM_032300__ 2751 GACGCCTGAAGAAGTTGTCGAAGTGAAAGAATCATATACGGGCCGCTATC 2800
BSNT_05348___ 2801 TGAAGCCTGTTATCGAACGTGACAAAGCACGCATGAA---ATCGCT--CT 2845
||||.||.||.||.||||||||.|||..|||.||||| ||.||| |
RBAM_032300__ 2801 TGAAACCGGTAATGGAACGTGATAAAAAACGGATGAAAACATTGCTGGC- 2849
BSNT_05348___ 2846 TGAAAGCGAAAGAAA---CAGCTACATCTTAA 2874
|||| ||||||| ||||.||| |||
RBAM_032300__ 2850 TGAA----AAAGAAACGGCAGCCACA---TAA 2874
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