Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05342 and RBAM_032270
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:47
# Commandline: needle
# -asequence dna-align/BSNT_05342___yvlB.1.9828.seq
# -bsequence dna-align/RBAM_032270___yvlB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05342___yvlB-RBAM_032270___yvlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05342___yvlB-RBAM_032270___yvlB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05342___yvlB
# 2: RBAM_032270___yvlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1120
# Identity: 855/1120 (76.3%)
# Similarity: 855/1120 (76.3%)
# Gaps: 44/1120 ( 3.9%)
# Score: 3150.5
#
#
#=======================================
BSNT_05342___ 1 ATGATGCAAGAAAAGGAACGAATCCTTAAGCTTGTTGAGGAAGGAAAGCT 50
||||..||.||.||.|||||.||..|.||||||||.||.||.||.|.|||
RBAM_032270__ 1 ATGAAACAGGAGAAAGAACGGATTTTAAAGCTTGTGGAAGACGGCATGCT 50
BSNT_05342___ 51 TACAGCACAAGAAGCTTTGACACTGATTGAAAAGCTTGA-CAGCGACTAC 99
.||.||.||.|||||..||||.||.||||||||.||.|| || .||.||.
RBAM_032270__ 51 GACGGCGCAGGAAGCACTGACGCTCATTGAAAAACTGGATCA-TGAATAT 99
BSNT_05342___ 100 AAGGAAAAAGAAGAGAAAATCACAGCGCTCTCAGTTCACGTTCATGA--- 146
||.||||||||||||.|.|||||.||..|.||.|...|.||.||.||
RBAM_032270__ 100 AAAGAAAAAGAAGAGCAGATCACCGCATTATCTGCGGAGGTCCAGGAACC 149
BSNT_05342___ 147 CGAGGAAGAGCCATTTACAA----CGGCAAAAAAAGAAAGCGGCAAGCCG 192
.|.||||| ||||..|| .||| |||||.||||...||||||
RBAM_032270__ 150 TGCGGAAG----ATTTCGAAAGCGGGGC---AAAAGGAAGCCAAAAGCCG 192
BSNT_05342___ 193 TCTTTAGGAGCCAAGCTGTTTGACTGGATTGATTCTGCTGTGAAAAAGGT 242
||..|.||.||.|||.||||.|||||||||||||||||.||.|||||.||
RBAM_032270__ 193 TCGCTCGGGGCGAAGTTGTTCGACTGGATTGATTCTGCCGTCAAAAAAGT 242
BSNT_05342___ 243 CAAGGAAGTTGACCTTGATTTAAACTTTGGCCATGCGTATGATGTTCAGC 292
.|||||||..||.||||||.|.||.||.|||||.||..|.||.||.||||
RBAM_032270__ 243 GAAGGAAGCGGATCTTGATCTGAATTTCGGCCACGCACACGAAGTGCAGC 292
BSNT_05342___ 293 ACATTTTTCAATTTAAAGATACTGACTTTT---CCAGTGTTGAGCTGCAA 339
|.|||||||||||||||||.|.|||.||.| ||| ||||..||||.
RBAM_032270__ 293 ATATTTTTCAATTTAAAGACAGTGAATTCTCGGCCA---TTGATATGCAG 339
BSNT_05342___ 340 ATTGCGAATGGCAGCGTGAATATCGTCCCTTGGGAAGATGACGATATCAG 389
||.||.||.||||||||.||||||||.||.||||..|||||.||||||||
RBAM_032270__ 340 ATCGCAAACGGCAGCGTCAATATCGTGCCGTGGGCGGATGAAGATATCAG 389
BSNT_05342___ 390 AGCGGAATGCCAGGCGAAGGTATATCGCGCTGACAGCCAGGATGCGGCGA 439
||||||.|||||||||||.||.||.||.||.|||||.|||||.||||||.
RBAM_032270__ 390 AGCGGAGTGCCAGGCGAAAGTGTACCGGGCGGACAGTCAGGAGGCGGCGC 439
BSNT_05342___ 440 GACA-CGCATTTCTTCAGCATATTGAATGTGAAATCAAAGGAAATAAATT 488
| || |||||||||||||||.|||||.||||||.|.||.||.|||||.||
RBAM_032270__ 440 G-CACCGCATTTCTTCAGCACATTGAGTGTGAAGTGAAGGGCAATAAGTT 488
BSNT_05342___ 489 TTTTATCCGTACTGAGAAAAAGACGATGAAAACGAATGTCACTTTGTATA 538
||||.||||.||.||.||.||.|||||||||||.||||||||..|.|||.
RBAM_032270__ 489 TTTTGTCCGCACGGAAAAGAAAACGATGAAAACCAATGTCACGCTTTATG 538
BSNT_05342___ 539 TTCCTCAGAAGGAGTATGATAAGATTCGGGTGAAGCTGTTTAACGGTCCG 588
||||.|||||.|||||.||||||||..|.|||||||||||||||||.|||
RBAM_032270__ 539 TTCCCCAGAAAGAGTACGATAAGATAAGAGTGAAGCTGTTTAACGGACCG 588
BSNT_05342___ 589 GTCAGAGGGGAACATTTACATGTAAAAGAGTTCTCAGCGAAAACGACAAA 638
.||||||||||||||||||||||||||||.|||||.||||||||||||||
RBAM_032270__ 589 ATCAGAGGGGAACATTTACATGTAAAAGAATTCTCGGCGAAAACGACAAA 638
BSNT_05342___ 639 CGGCGTGCTGTCGTTCTCGCACTTAACAGCCGAAAAAGCCATAGCTGAAA 688
||||||.|||||.|||||.||.||.||.||.||.|||||....||.||||
RBAM_032270__ 639 CGGCGTTCTGTCATTCTCTCATTTGACGGCTGATAAAGCGTCGGCGGAAA 688
BSNT_05342___ 689 CGGCCAACGGGCAAATTAAACTCGCCAGCCACAGC--TGCGGAACGATAG 736
||||.|||||.|||||.||.||.|||.| |||.| |||||..||||.|
RBAM_032270__ 689 CGGCTAACGGACAAATCAAGCTGGCCGG--ACATCAATGCGGCGCGATTG 736
BSNT_05342___ 737 AAGCGGAAACCATTAACGGATTGATCGATCTCCGAGGGAAAAGCGAATCC 786
||||||||||.||.|||||.|||||.|||.|.||.||....||.||||||
RBAM_032270__ 737 AAGCGGAAACGATAAACGGCTTGATTGATTTGCGCGGATCGAGTGAATCC 786
BSNT_05342___ 787 ATTGACGTTCAAAGCTTTAACGGAAATAT--TGCGATTAACGTAACAGAA 834
|||||||||||||||||||||||.||||| ||| |||.|||.||||..
RBAM_032270__ 787 ATTGACGTTCAAAGCTTTAACGGCAATATCATGC--TTACCGTGACAGCG 834
BSNT_05342___ 835 TCAGACTGCCGCTCCATTTATGCAAAAACAACGACTGGAAGTGTGGAGCT 884
.|..|||||||||||||.||..|.|||||.|||||.||||..|||||..|
RBAM_032270__ 835 CCGCACTGCCGCTCCATCTACACGAAAACGACGACGGGAAACGTGGATAT 884
BSNT_05342___ 885 TGCGATTCCGGACGATCTC-GCAGTGAAGGCAGAGCTGAAAAGCAATCTT 933
.||..|.||.||.||| || ||.|||||.||.|||||||||||||||||.
RBAM_032270__ 885 CGCTCTGCCTGATGAT-TCGGCGGTGAAAGCGGAGCTGAAAAGCAATCTC 933
BSNT_05342___ 934 GGTTCGCTGTCCCATGAATTAATGGATGTTGAGATGCTGAAGGAAAAAAA 983
||.||.||...||||||..|.||.||||..||.||..|.||||||||.||
RBAM_032270__ 934 GGCTCTCTCAGCCATGAGCTGATTGATGCGGAAATTTTAAAGGAAAAGAA 983
BSNT_05342___ 984 TGATACCATTCAAAAAGAAATGATGTTCACTTCAAATC-AGGCACATGAT 1032
|||||||||||||||||||.|||||.|..|.||||||| |||| ||||||
RBAM_032270__ 984 TGATACCATTCAAAAAGAACTGATGCTGGCATCAAATCAAGGC-CATGAT 1032
BSNT_05342___ 1033 CAAAACATCAC-CG-TCTTCTCAGAATCACTAACAGGCGCCATCAAACTA 1080
| |.||||.| || |.|||||||||||..|||||||.|||||.||.||.
RBAM_032270__ 1033 C--AGCATCTCTCGATTTTCTCAGAATCGTTAACAGGAGCCATTAAGCTC 1080
BSNT_05342___ 1081 AAG--TACTCACAGAGGTGA 1098
||| |||| |||||||||
RBAM_032270__ 1081 AAGCATACT--CAGAGGTGA 1098
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