Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05341 and RBAM_032260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:47
# Commandline: needle
# -asequence dna-align/BSNT_05341___yvlC.1.9828.seq
# -bsequence dna-align/RBAM_032260___yvlC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05341___yvlC-RBAM_032260___yvlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05341___yvlC-RBAM_032260___yvlC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05341___yvlC
# 2: RBAM_032260___yvlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 202
# Identity: 136/202 (67.3%)
# Similarity: 136/202 (67.3%)
# Gaps: 11/202 ( 5.4%)
# Score: 416.5
#
#
#=======================================
BSNT_05341___ 1 ATGAATAAG-CTTTATCGCTCAGAAAAAAATAAGAAAATCGCCGGTGTTA 49
||||| ||| |||||.||.|||||||||||....|||||||||||.||..
RBAM_032260__ 1 ATGAA-AAGACTTTACCGTTCAGAAAAAAACCGTAAAATCGCCGGCGTCG 49
BSNT_05341___ 50 TCGGAGGTCTCGCGGAATATTTCAATTGGGACGCATCACTCCTCAGAGTC 99
||||.|||.|.|||||.||..|||||..|||.||.||.||..|..|..|.
RBAM_032260__ 50 TCGGCGGTTTGGCGGAGTACGTCAATATGGATGCGTCGCTTTTGCGCATT 99
BSNT_05341___ 100 ATAACTGTCATCTTAGCCATTATGACAAGTG---TCTTGCCGGTTTTGCT 146
||.||.||..|.|||||..||.|.||.||.| ||.|||||.||
RBAM_032260__ 100 ATCACCGTTGTATTAGCGCTTGTCACGAGCGGAATCGTGCCGATT----- 144
BSNT_05341___ 147 CATTTATATCATTTGGATTTTTATCGTCCCGTCAGAAAGGGATATGAAAT 196
.|.|||||.||.|||..||||.|.||.||.|.||||.|.|||.||||||
RBAM_032260__ 145 -GTATATATTATCTGGTGTTTTGTTGTACCTTTAGAAGGAGATTTGAAAT 193
BSNT_05341___ 197 GA 198
.|
RBAM_032260__ 194 AA 195
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