Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05341 and RBAM_032260

See Amino acid alignment / Visit BSNT_05341 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:47
# Commandline: needle
#    -asequence dna-align/BSNT_05341___yvlC.1.9828.seq
#    -bsequence dna-align/RBAM_032260___yvlC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05341___yvlC-RBAM_032260___yvlC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05341___yvlC-RBAM_032260___yvlC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05341___yvlC
# 2: RBAM_032260___yvlC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 202
# Identity:     136/202 (67.3%)
# Similarity:   136/202 (67.3%)
# Gaps:          11/202 ( 5.4%)
# Score: 416.5
# 
#
#=======================================

BSNT_05341___      1 ATGAATAAG-CTTTATCGCTCAGAAAAAAATAAGAAAATCGCCGGTGTTA     49
                     ||||| ||| |||||.||.|||||||||||....|||||||||||.||..
RBAM_032260__      1 ATGAA-AAGACTTTACCGTTCAGAAAAAAACCGTAAAATCGCCGGCGTCG     49

BSNT_05341___     50 TCGGAGGTCTCGCGGAATATTTCAATTGGGACGCATCACTCCTCAGAGTC     99
                     ||||.|||.|.|||||.||..|||||..|||.||.||.||..|..|..|.
RBAM_032260__     50 TCGGCGGTTTGGCGGAGTACGTCAATATGGATGCGTCGCTTTTGCGCATT     99

BSNT_05341___    100 ATAACTGTCATCTTAGCCATTATGACAAGTG---TCTTGCCGGTTTTGCT    146
                     ||.||.||..|.|||||..||.|.||.||.|   ||.|||||.||     
RBAM_032260__    100 ATCACCGTTGTATTAGCGCTTGTCACGAGCGGAATCGTGCCGATT-----    144

BSNT_05341___    147 CATTTATATCATTTGGATTTTTATCGTCCCGTCAGAAAGGGATATGAAAT    196
                      .|.|||||.||.|||..||||.|.||.||.|.||||.|.|||.||||||
RBAM_032260__    145 -GTATATATTATCTGGTGTTTTGTTGTACCTTTAGAAGGAGATTTGAAAT    193

BSNT_05341___    197 GA    198
                     .|
RBAM_032260__    194 AA    195


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