Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05339 and RBAM_032250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:47
# Commandline: needle
# -asequence dna-align/BSNT_05339___yvlD.1.9828.seq
# -bsequence dna-align/RBAM_032250___yvlD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05339___yvlD-RBAM_032250___yvlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05339___yvlD-RBAM_032250___yvlD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05339___yvlD
# 2: RBAM_032250___yvlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity: 283/360 (78.6%)
# Similarity: 283/360 (78.6%)
# Gaps: 0/360 ( 0.0%)
# Score: 1107.0
#
#
#=======================================
BSNT_05339___ 1 ATGGTAAAATGGGCAGTCAGCATTTTAGTCAATGCATTGTTATTAATCGT 50
|||.|.|||||||||||||||||||||||.|||||.||.|||||||||||
RBAM_032250__ 1 ATGATCAAATGGGCAGTCAGCATTTTAGTAAATGCTTTATTATTAATCGT 50
BSNT_05339___ 51 CATTGATGGATATATTGACTCCATCCATATCAGCAGCATTGGGGCAGCGA 100
.||.|..||||||.||||.|||.|||||||||||||.||.||.||.||..
RBAM_032250__ 51 TATCGCGGGATATTTTGATTCCGTCCATATCAGCAGTATCGGAGCGGCTG 100
BSNT_05339___ 101 TTATCGCCAGCCTCATTTTATCGATCTTAAACGTGCTGATTAAACCGCTT 150
|.||||||||..|.|||.|.||..|.|||||.||.|||||.||.|||.|.
RBAM_032250__ 101 TCATCGCCAGTGTGATTCTTTCTGTGTTAAATGTACTGATCAAGCCGATC 150
BSNT_05339___ 151 TTAATTATCTTTACACTGCCGGTCACCATGGTGACGCTTGGACTCTTCTT 200
.|..|.||.||.|||.||||.|||||..|.|||||.||.||.|||||..|
RBAM_032250__ 151 ATCGTCATATTGACATTGCCCGTCACGGTTGTGACCCTCGGCCTCTTTCT 200
BSNT_05339___ 201 GTTTGTGATTAACGCCATCACGCTTATGATGACCGCGTCCATTATGGGTG 250
||||||.||.||||||||.|||.|.|||||||||||..||.|.|||||.|
RBAM_032250__ 201 GTTTGTCATCAACGCCATTACGTTAATGATGACCGCAGCCTTGATGGGAG 250
BSNT_05339___ 251 ACAGCTTTCAAATCGACGGCTTCGGCACAGCGATATGGGCATCCGTTATC 300
||||||||||.||.||.||.||||||||.||.||.|||||||||||..|.
RBAM_032250__ 251 ACAGCTTTCAGATTGATGGGTTCGGCACCGCCATTTGGGCATCCGTCGTG 300
BSNT_05339___ 301 CTGTCGGTCTTCCATTTGCTGATTCAAAAAGGCATTTTAGAGCCGCTTAG 350
|||||.||.|||||.||||||||.|||||||||||.||.|||||||||||
RBAM_032250__ 301 CTGTCCGTTTTCCACTTGCTGATCCAAAAAGGCATATTGGAGCCGCTTAG 350
BSNT_05339___ 351 AAAAAAATAA 360
|||||..|||
RBAM_032250__ 351 AAAAAGGTAA 360
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