Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05339 and RBAM_032250

See Amino acid alignment / Visit BSNT_05339 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:47
# Commandline: needle
#    -asequence dna-align/BSNT_05339___yvlD.1.9828.seq
#    -bsequence dna-align/RBAM_032250___yvlD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05339___yvlD-RBAM_032250___yvlD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05339___yvlD-RBAM_032250___yvlD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05339___yvlD
# 2: RBAM_032250___yvlD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 360
# Identity:     283/360 (78.6%)
# Similarity:   283/360 (78.6%)
# Gaps:           0/360 ( 0.0%)
# Score: 1107.0
# 
#
#=======================================

BSNT_05339___      1 ATGGTAAAATGGGCAGTCAGCATTTTAGTCAATGCATTGTTATTAATCGT     50
                     |||.|.|||||||||||||||||||||||.|||||.||.|||||||||||
RBAM_032250__      1 ATGATCAAATGGGCAGTCAGCATTTTAGTAAATGCTTTATTATTAATCGT     50

BSNT_05339___     51 CATTGATGGATATATTGACTCCATCCATATCAGCAGCATTGGGGCAGCGA    100
                     .||.|..||||||.||||.|||.|||||||||||||.||.||.||.||..
RBAM_032250__     51 TATCGCGGGATATTTTGATTCCGTCCATATCAGCAGTATCGGAGCGGCTG    100

BSNT_05339___    101 TTATCGCCAGCCTCATTTTATCGATCTTAAACGTGCTGATTAAACCGCTT    150
                     |.||||||||..|.|||.|.||..|.|||||.||.|||||.||.|||.|.
RBAM_032250__    101 TCATCGCCAGTGTGATTCTTTCTGTGTTAAATGTACTGATCAAGCCGATC    150

BSNT_05339___    151 TTAATTATCTTTACACTGCCGGTCACCATGGTGACGCTTGGACTCTTCTT    200
                     .|..|.||.||.|||.||||.|||||..|.|||||.||.||.|||||..|
RBAM_032250__    151 ATCGTCATATTGACATTGCCCGTCACGGTTGTGACCCTCGGCCTCTTTCT    200

BSNT_05339___    201 GTTTGTGATTAACGCCATCACGCTTATGATGACCGCGTCCATTATGGGTG    250
                     ||||||.||.||||||||.|||.|.|||||||||||..||.|.|||||.|
RBAM_032250__    201 GTTTGTCATCAACGCCATTACGTTAATGATGACCGCAGCCTTGATGGGAG    250

BSNT_05339___    251 ACAGCTTTCAAATCGACGGCTTCGGCACAGCGATATGGGCATCCGTTATC    300
                     ||||||||||.||.||.||.||||||||.||.||.|||||||||||..|.
RBAM_032250__    251 ACAGCTTTCAGATTGATGGGTTCGGCACCGCCATTTGGGCATCCGTCGTG    300

BSNT_05339___    301 CTGTCGGTCTTCCATTTGCTGATTCAAAAAGGCATTTTAGAGCCGCTTAG    350
                     |||||.||.|||||.||||||||.|||||||||||.||.|||||||||||
RBAM_032250__    301 CTGTCCGTTTTCCACTTGCTGATCCAAAAAGGCATATTGGAGCCGCTTAG    350

BSNT_05339___    351 AAAAAAATAA    360
                     |||||..|||
RBAM_032250__    351 AAAAAGGTAA    360


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