Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05330 and RBAM_032210

See Amino acid alignment / Visit BSNT_05330 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:46
# Commandline: needle
#    -asequence dna-align/BSNT_05330___nagB.1.9828.seq
#    -bsequence dna-align/RBAM_032210___nagB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05330___nagB-RBAM_032210___nagB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05330___nagB-RBAM_032210___nagB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05330___nagB
# 2: RBAM_032210___nagB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     511/776 (65.9%)
# Similarity:   511/776 (65.9%)
# Gaps:          97/776 (12.5%)
# Score: 1525.0
# 
#
#=======================================

BSNT_05330___      1 ATGAAAGTAATGGAATGTCAAAC-GTATGAAGAGCTAAGCCAAAAAGCAG     49
                     |||||.||.||...||| ||.|| .||||||||..||||..|||||||.|
RBAM_032210__      1 ATGAACGTTATCACATG-CAGACATTATGAAGAATTAAGTGAAAAAGCCG     49

BSNT_05330___     50 CCA--GAATAACGGCAGATACAATCAAAGAAAAACCTGATGCCGTTCTCG     97
                      ||  ||.||.| ||.||.|||.|.|||.||||.||.|||||||||||||
RBAM_032210__     50 -CATCGATTATC-GCTGAAACAGTGAAACAAAAGCCGGATGCCGTTCTCG     97

BSNT_05330___     98 GGTTAGCGACAGGCGGCACACCGGAAGGCACGTATCGCGAGCTGATCCGC    147
                     |..|.|||||.||.|||||.||.||||||...|||...||.||..|.||.
RBAM_032210__     98 GCCTTGCGACGGGAGGCACTCCTGAAGGCGTATATAAAGAACTTGTGCGG    147

BSNT_05330___    148 CTGCACCAAACTGAGAA---TCTCTCATTTCAAAACATCACTACAGTTAA    194
                     .||||||  .||.||||   | |.|||||.|..||..||||.||..|.||
RBAM_032210__    148 ATGCACC--GCTCAGAAGGCT-TGTCATTCCGGAATGTCACGACGATCAA    194

BSNT_05330___    195 TTTGGATGAGTACGCCGGACTTTCAAGCAACGCCCCG--------AACAG    236
                     ..|.|||||.||||||||.|||||        .||||        |||||
RBAM_032210__    195 CCTTGATGAATACGCCGGGCTTTC--------TCCCGAGGACAAAAACAG    236

BSNT_05330___    237 CTATCACTTCTATATGAATGAC-CGTTTATTT-CAGCATATCGACAGC--    282
                     ||||||.|..||||||||| || |.|||.||| || ||||||||||||  
RBAM_032210__    237 CTATCATTATTATATGAAT-ACACATTTTTTTGCA-CATATCGACAGCCG    284

BSNT_05330___    283 -AAGCCTAG-CCGGCATTTTATTCCGAATGGAAATGCAGACGATTTGGAA    330
                      |||    | |||.||.|||.|.||..|.|||...|||||||||.|.||.
RBAM_032210__    285 AAAG----GACCGCCACTTTCTCCCTGACGGACGGGCAGACGATCTTGAT    330

BSNT_05330___    331 GCCGAATGCAGACGGTATGAACAGCTAGTCGAGT--------CCCTCGGC    372
                     |||||||||.||||.|||||        .|||.|        |.||||||
RBAM_032210__    331 GCCGAATGCGGACGATATGA--------CCGATTGATTCAAACACTCGGC    372

BSNT_05330___    373 GGCACTGACATTCAGCTTCTCGGCATCGGCCGAAACGGGCACATCGGCTT    422
                     ||..|.||.||.||||||.|.||||||||.|..|||||.||.|||||.||
RBAM_032210__    373 GGAGCGGATATACAGCTTTTAGGCATCGGACACAACGGCCATATCGGTTT    422

BSNT_05330___    423 TAACGAACCGGGAACGTC-TTTCAAGTCGCGAACTCATGTTG-TGA-CAT    469
                     |||.|||||.||.|||.| |||.|| ||.|||||.|||||.| ||| |  
RBAM_032210__    423 TAATGAACCCGGGACGCCATTTGAA-TCCCGAACCCATGTCGTTGAGC--    469

BSNT_05330___    470 TAAATGAGCAAACCCGCCAAGCGAATGCCAGATATTTTCCTTCCATAGA-    518
                     |.|||||..|.||..|.||.||||||||..|.||.|||||.||.||.|| 
RBAM_032210__    470 TGAATGAAGAGACAAGACAGGCGAATGCGCGGTACTTTCCGTCAATTGAT    519

BSNT_05330___    519 CAGCGTGCCGAAAAAAGCGCTCACAATGGGAATTCAAACGATACTCTCAA    568
                     || .||.||...||||||.||.||||||||.||....|||||..|.||..
RBAM_032210__    520 CA-AGTCCCTGTAAAAGCCCTGACAATGGGGATCGGGACGATTTTGTCCG    568

BSNT_05330___    569 GCAAGCGCATTCTGCTGCTCAT---TTCTGGAAAAAGCAAAGCGGAAGCT    615
                     ||||.||.|||   .||.||||   .||.|||||||||||.||..||||.
RBAM_032210__    569 GCAAACGGATT---TTGATCATGGCATCCGGAAAAAGCAAGGCCCAAGCG    615

BSNT_05330___    616 GTTCGTA--AGCTGTTAGAAGGAAACATAAGCGAAGATTTTCCCGCATCT    663
                     ||  |.|  ||||..|.||.||...|||.|||||||..||.|||||.||.
RBAM_032210__    616 GT--GAAGCAGCTTCTGGACGGGCGCATCAGCGAAGCATTCCCCGCCTCC    663

BSNT_05330___    664 GCTTTGCACCTGCATTCCGATGTTACGGTTTTGATTGATCGTGAA-----    708
                     ||..|||||..||||.|.|||||.|||||.||||||||   ||||     
RBAM_032210__    664 GCCCTGCACGCGCATCCGGATGTGACGGTCTTGATTGA---TGAAAAGGC    710

BSNT_05330___    709 -----GCCGCGTCATTAAGACCTTGA    729
                          ||.|||  |||.|        
RBAM_032210__    711 TGCGGGCGGCG--ATTGA--------    726


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05330 and RBAM_032210

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
