Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05323 and RBAM_032160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05323.1.9828.seq
# -bsequence dna-align/RBAM_032160___yvoF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05323-RBAM_032160___yvoF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05323-RBAM_032160___yvoF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05323
# 2: RBAM_032160___yvoF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 516
# Identity: 254/516 (49.2%)
# Similarity: 254/516 (49.2%)
# Gaps: 204/516 (39.5%)
# Score: 994.0
#
#
#=======================================
BSNT_05323 1 GTGAGAAAAACAGATCGTCATCCGGTCTCGGGGGCCAACTCACTGTGGCA 50
||||||||||||||.||.||||||||.||.||.||.||.|||.|||||||
RBAM_032160__ 1 GTGAGAAAAACAGACCGCCATCCGGTTTCAGGTGCAAATTCATTGTGGCA 50
BSNT_05323 51 TGTCTATCAAACGGTACCTTTTTTAAAGGTCGTCAAAAATTTCATTGTCA 100
|||.|||||.|||||.||.|||.|.|||||..|.|||||||||||..|||
RBAM_032160__ 51 TGTTTATCAGACGGTTCCCTTTCTGAAGGTGATGAAAAATTTCATCATCA 100
BSNT_05323 101 TTCAAATTGCGAGATATACGCCGTTTATAGGGATGAAAAACTGGCTGTAC 150
||||.||.||.||.||||||||||||.||.|..|||||||||||||||||
RBAM_032160__ 101 TTCAGATCGCAAGGTATACGCCGTTTTTAAGCGTGAAAAACTGGCTGTAC 150
BSNT_05323 151 CGTACATTTCTGCGGATGAAGGTTGGAAATCAGACATCCTTTGCCCTCAT 200
||.||.|||.||...|||||.||.|||||.|||||.||.||.||.||.||
RBAM_032160__ 151 CGAACCTTTTTGAAAATGAATGTCGGAAAACAGACGTCATTCGCGCTGAT 200
BSNT_05323 201 GGTGATGCCAGATATCATGTTTCCGGAAAAGATCTCAGTCGGAACAAATA 250
|||||||||.||||||||||||||.|||||.|||.|.|||||||.|||.|
RBAM_032160__ 201 GGTGATGCCGGATATCATGTTTCCCGAAAAAATCACTGTCGGAAAAAACA 250
BSNT_05323 251 CAATCATCGGGTACAATACGACCATTCTGGCCCATGAGTATT-------- 292
..||||||||.|||||||||||.|||.||||.|||||.||||
RBAM_032160__ 251 GTATCATCGGCTACAATACGACGATTTTGGCTCATGAATATTTAATACAT 300
BSNT_05323 293 -----CCGGATCGG------CACA------------GTTCTGA------- 312
|||||.||| |||| ||..|||
RBAM_032160__ 301 GAGTACCGGACCGGTTTTGTCACAATCGGTGACGAGGTGATGATCGGGGC 350
BSNT_05323 312 -------------------------------------------------- 312
RBAM_032160__ 351 AAACACAACCATTCTGCCCGGCGTCACCATCGGGAGCGGAGCCGTTGTAT 400
BSNT_05323 312 -------------------------------------------------- 312
RBAM_032160__ 401 CAGCCGGCACGCTGGTGCACAAAGATGTCCCGGCCGGGGCGTTTGTCGGA 450
BSNT_05323 312 -------------------------------------------------- 312
RBAM_032160__ 451 GGAAATCCGATGCAGGTGATCTATACGGACGAAGAAATGAAAGAACGAAT 500
BSNT_05323 312 ---------------- 312
RBAM_032160__ 501 GGGAAAACCCCGCTGA 516
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