Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05315 and RBAM_032150

See Amino acid alignment / Visit BSNT_05315 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:45
# Commandline: needle
#    -asequence dna-align/BSNT_05315___yvpB.1.9828.seq
#    -bsequence dna-align/RBAM_032150___yvpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05315___yvpB-RBAM_032150___yvpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05315___yvpB-RBAM_032150___yvpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05315___yvpB
# 2: RBAM_032150___yvpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 772
# Identity:     534/772 (69.2%)
# Similarity:   534/772 (69.2%)
# Gaps:          65/772 ( 8.4%)
# Score: 1795.5
# 
#
#=======================================

BSNT_05315___      1 ATGAAAACACTGCGAACTCTATGTGTCCTGATGATTCTTTCAGGCG---T     47
                     |||||.||.||..||||..||||||   ||.|||||||..|||.||   |
RBAM_032150__      1 ATGAAGACGCTTGGAACATTATGTG---TGCTGATTCTGACAGCCGTCCT     47

BSNT_05315___     48 TATTTTTTTCGGACTTAAAATAGATGCAAAAGATATAGATATTCCTTTTT     97
                     |.|.|.|.|.|||..|||.||..||.||||.|||||..||.|...|||||
RBAM_032150__     48 TGTCTATCTGGGATATAACATCTATACAAACGATATTCATTTGAATTTTT     97

BSNT_05315___     98 TGAA-CAGCCTTAAAAAAGTGGTTTCTGATAGCGATACAGACTCAGCTGC    146
                     |.|| ||||        ||     ||.||   |||..|.||      ||.
RBAM_032150__     98 TCAATCAGC--------AG-----TCCGA---CGAGCCTGA------TGA    125

BSNT_05315___    147 GAATAGCA-----AAAAGGAGCTGAAGGGAAGCGCAAAACCGCTGGATGT    191
                     ||| |.||     ||||          ||.|||||...|||||||.||||
RBAM_032150__    126 GAA-AACACCGTTAAAA----------GGGAGCGCGTCACCGCTGAATGT    164

BSNT_05315___    192 CATCCTTTACAATCAAATGGACGCACCCCGGCTCTATAACGGCTGTGAAG    241
                     |.|.||.||||..||.|||||..|.|||.|.||.||.||.||||||||.|
RBAM_032150__    165 CGTTCTGTACAGACAGATGGATTCTCCCAGACTGTACAATGGCTGTGAGG    214

BSNT_05315___    242 TAACAAGCCTTGCGATGGTGCTGAATTACGCGGGATACGACGTGACAAAA    291
                     |.|||||||||||.|||.|..||||..|.||.|||||..|.||..|||||
RBAM_032150__    215 TGACAAGCCTTGCCATGATTTTGAACAATGCCGGATATCATGTATCAAAA    264

BSNT_05315___    292 AACACTCTGGC-----AAATCAGATTGCCACAGTGCCTTTGACATACAGC    336
                     ||.||..||||     |||||| ||    |.|||.||..|.|||||||||
RBAM_032150__    265 AATACATTGGCGGATAAAATCA-AT----AAAGTTCCGCTCACATACAGC    309

BSNT_05315___    337 AGCGGATTAAAGGGTGATCCGAATGACGGATTTGTCGGGGATATGGCGAA    386
                     |||||..|.|||||.|||||||||||.|||||||.|||.|||||||..||
RBAM_032150__    310 AGCGGGCTGAAGGGAGATCCGAATGAAGGATTTGCCGGAGATATGGAAAA    359

BSNT_05315___    387 TGGCCCTGGTCTCGGTGTCTACCATCGA-CCGATCTATCAGCTGGCGAAA    435
                     .|||||.|||.|.||.||.||.||| || |||||..||.|.||.||.|||
RBAM_032150__    360 CGGCCCGGGTTTAGGCGTTTATCAT-GAGCCGATTGATAAACTCGCCAAA    408

BSNT_05315___    436 ACCTATGCGGGAGACAAAGTGTCTGATCTGACTGGAAAAAGTATTTCCGC    485
                     ...|||||||||.|||||||.|..||||||||.||||||...|||||..|
RBAM_032150__    409 GAATATGCGGGAAACAAAGTATACGATCTGACGGGAAAAGACATTTCTTC    458

BSNT_05315___    486 TGTTTATCAGCAGCTTGAAAAAGGCAATCCAGTTTGGGTTATTACGACAG    535
                     .||.||.|..||||||||||||||....||.||.|||||.|||||.||..
RBAM_032150__    459 AGTGTACCGCCAGCTTGAAAAAGGGCGGCCGGTCTGGGTGATTACCACCA    508

BSNT_05315___    536 CCAACTTTACGCCAGTTGACAACATGCAGACATGGAAAACGCCAAACGGA    585
                     |...|||||.|||.|||||.||.||||||||.|||||.|||||.||||||
RBAM_032150__    509 CATCCTTTAAGCCGGTTGATAATATGCAGACTTGGAATACGCCGAACGGA    558

BSNT_05315___    586 ACGATAGAAATTACGTACAGCGAACACAGCGTCGCCGTTACGGGATATGA    635
                     |.|||.||..||||||.||||...||.|||||.|||||.||.||.|||||
RBAM_032150__    559 AAGATCGACGTTACGTTCAGCATGCATAGCGTAGCCGTCACAGGTTATGA    608

BSNT_05315___    636 TGATAAATATGTGTATCTCAATGATCCGTATGGCTATAAAAACAGAAAAA    685
                     |.|..|.|||||.||..||||||||||.||.|||||||||||||||||||
RBAM_032150__    609 TCACGATTATGTATACGTCAATGATCCTTACGGCTATAAAAACAGAAAAA    658

BSNT_05315___    686 CCGATAGAACAAGCTTTGAAAAAGCGTGGAAACAAATGGGCAGCCAGGCC    735
                     |.|||.|..|...||||||||||||.|||||.||.|||||||||||||||
RBAM_032150__    659 CAGATCGGTCTGACTTTGAAAAAGCCTGGAAGCAGATGGGCAGCCAGGCC    708

BSNT_05315___    736 GTGGTTAT----TCAAAAGTAA    753
                     .|.||.||    |||.||    
RBAM_032150__    709 ATTGTGATCAAGTCATAA----    726


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05315 and RBAM_032150

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
