Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05308 and RBAM_032100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:45
# Commandline: needle
# -asequence dna-align/BSNT_05308___hisH.1.9828.seq
# -bsequence dna-align/RBAM_032100___hisH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05308___hisH-RBAM_032100___hisH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05308___hisH-RBAM_032100___hisH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05308___hisH
# 2: RBAM_032100___hisH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 644
# Identity: 502/644 (78.0%)
# Similarity: 502/644 (78.0%)
# Gaps: 10/644 ( 1.6%)
# Score: 1901.0
#
#
#=======================================
BSNT_05308___ 1 ATGATCGGCGTGATAGATTACGGAATGGGGAATTTATACAGTGTCTCAAA 50
||||||||.||.||.||||||||.|||||.|||||||.|||.||.||.||
RBAM_032100__ 1 ATGATCGGTGTAATTGATTACGGTATGGGCAATTTATTCAGCGTGTCGAA 50
BSNT_05308___ 51 GGCGCTTGAACGTGTCGGCGTGCCGTATTTTGTTTCTGAAAAGCCGGAGG 100
||||||.|||||.||||||||.||||||.|.||.||.||...||||||.|
RBAM_032100__ 51 GGCGCTGGAACGCGTCGGCGTCCCGTATGTCGTATCAGACCGGCCGGAAG 100
BSNT_05308___ 101 AGC-TGAAAGAAGCTGATGCCTTCATTTTGCCGGGAGTCGGTTCATTTGG 149
||| ||||| ||||.|||||.||.|||.|.||.||.|||||.|||||..|
RBAM_032100__ 101 AGCTTGAAA-AAGCGGATGCTTTTATTCTCCCCGGTGTCGGATCATTCAG 149
BSNT_05308___ 150 AGACGCGATGGACAATTTGCGCTACACGAAGCTTGATCAATTGATTCACG 199
.|||||.|||||||||||.|||..|.||||||||||||||||.||.|||.
RBAM_032100__ 150 TGACGCCATGGACAATTTACGCCGCGCGAAGCTTGATCAATTCATACACC 199
BSNT_05308___ 200 ATATGGTCTCA-GAGGGAAGGCTGCTTCTAGGGATCTGCCTCGGCATGCA 248
.|||||| |.| |||||.|.||||||.||.||.|||||||||||||||||
RBAM_032100__ 200 GTATGGT-TGACGAGGGTAAGCTGCTCCTCGGCATCTGCCTCGGCATGCA 248
BSNT_05308___ 249 GCTTTTATTTGAAGAAAGCGAAGAAAACGGCACCGCTTCAGGACTCGGGC 298
|||..|.||.|||||||||...|||||||||.|.||...||||||.||..
RBAM_032100__ 249 GCTCATTTTCGAAGAAAGCACCGAAAACGGCTCTGCAAAAGGACTTGGTT 298
BSNT_05308___ 299 TGTTAAAAGGAAAAGCAGTCAGGCTGAAAG-CAGAAGATGAAAAAGGAAA 347
|.|||...||||||||.||.||.||.|||| ||| |||||...|||||||
RBAM_032100__ 299 TATTAGCCGGAAAAGCTGTGAGACTCAAAGACAG-AGATGCCGAAGGAAA 347
BSNT_05308___ 348 CAAGCTGAAGGTTCCGCATATGGGCTGGAATCGTCTTTCCTTTCA--TAA 395
||||||||||||.|||||||||||||||||.||.||..|.||||| .||
RBAM_032100__ 348 CAAGCTGAAGGTGCCGCATATGGGCTGGAACCGGCTGACGTTTCACCAAA 397
BSNT_05308___ 396 CGAATCTCCGCTGCTGACTAAAACAGAACAAGGCTACGCTTACTTCGTTC 445
|| |||||..||||..|..||.|.|||.||||||.||.||||||.||.|
RBAM_032100__ 398 CG--TCTCCTTTGCTTTCGGAAGCGGAAGAAGGCTTCGTTTACTTTGTCC 445
BSNT_05308___ 446 ATTCCTATTACATTGACGGGATGGAGGAGGACTCGCTCCTGGCAAGCACC 495
||||||||||.||.|||||||||||.||.|.|...||.|||||||||.|.
RBAM_032100__ 446 ATTCCTATTATATAGACGGGATGGAAGACGGCGATCTTCTGGCAAGCGCT 495
BSNT_05308___ 496 GATTATGGTGTGCGAGTGCCTGCTGTAGTCGGAAAAAGAAACGTCTTCGG 545
||.||.||.||.||.||.||.||.||.|||||.|||.|.||.||||||||
RBAM_032100__ 496 GAGTACGGCGTTCGTGTTCCGGCCGTCGTCGGGAAACGCAATGTCTTCGG 545
BSNT_05308___ 546 CGCCCAATTTCATCCGGAAAAAAGCAGCACGGTCGGAATGTCTATTTTAA 595
.||.||.|||||.||||||||||||.|.||||.|||||||.|.||.||||
RBAM_032100__ 546 TGCACAGTTTCACCCGGAAAAAAGCGGTACGGCCGGAATGGCGATCTTAA 595
BSNT_05308___ 596 CCCAATTTACGAAAATGGCAGCAAAACAGAAGGTGAAAAAATGA 639
|.||||||||.|||||||||||..|||||.|||||||.||||||
RBAM_032100__ 596 CGCAATTTACAAAAATGGCAGCGGAACAGCAGGTGAAGAAATGA 639
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