Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05307 and RBAM_032090

See Amino acid alignment / Visit BSNT_05307 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:44
# Commandline: needle
#    -asequence dna-align/BSNT_05307___hisA.1.9828.seq
#    -bsequence dna-align/RBAM_032090___hisA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05307___hisA-RBAM_032090___hisA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05307___hisA-RBAM_032090___hisA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05307___hisA
# 2: RBAM_032090___hisA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 757
# Identity:     565/757 (74.6%)
# Similarity:   565/757 (74.6%)
# Gaps:          38/757 ( 5.0%)
# Score: 2047.5
# 
#
#=======================================

BSNT_05307___      1 ATGAGTGCTTTTACATTATATCCGGCAATTGATATGAGAAACGGCAAATG     50
                     ||||..|||||||||||||||||||||||.||||||||||||||||||||
RBAM_032090__      1 ATGAACGCTTTTACATTATATCCGGCAATCGATATGAGAAACGGCAAATG     50

BSNT_05307___     51 TGTCCGCCTTGTTCAAGGGGATTATAATAAGGAAACGATATATGGCGATT    100
                     .||||||||..|.|||||.|||||....||||||||||||||.||.||.|
RBAM_032090__     51 CGTCCGCCTCATCCAAGGCGATTACGGCAAGGAAACGATATACGGTGACT    100

BSNT_05307___    101 CACCGTACGACATGGCTGAGTTATTTGCGAAAGAGGGTGCCGAATGGATC    150
                     |.||.|..||||||||.|.|..||||||..||||.||||||||||||||.
RBAM_032090__    101 CTCCTTTAGACATGGCAGCGCAATTTGCACAAGAAGGTGCCGAATGGATT    150

BSNT_05307___    151 CATCTCGTTGATCTCGACGGGGCCAAAGAAG---GGAAAAGGGTAAATGA    197
                     ||||||||.||.||.|||||.||.||||.||   |||||   |||||.||
RBAM_032090__    151 CATCTCGTGGACCTTGACGGCGCGAAAGCAGGCAGGAAA---GTAAACGA    197

BSNT_05307___    198 CCGCCATGTGATTGAGATTGCGCAAAAGC-TGAACCTG--AAAGTCGAAA    244
                     |.|.|||||..||||.|||||||...||| |||   ||  ||||||||.|
RBAM_032090__    198 CAGGCATGTTCTTGACATTGCGCGGCAGCTTGA---TGCCAAAGTCGAGA    244

BSNT_05307___    245 TCGGCGGCGGAATCCGTTCCGAAAAAGACGTCTATGAATATTTATCAGCA    294
                     ||||||||||.||||||||.|||...||.||.||.|..|||||||||..|
RBAM_032090__    245 TCGGCGGCGGGATCCGTTCTGAAGCGGATGTATACGGTTATTTATCACAA    294

BSNT_05307___    295 GGAGTCGATCGGGTGATCCTGGGAAGCTCAGCAGTTTCTAACCCTCCGTT    344
                     ||.||.|||||.||.||.||.||.|||||.||.|||||..|.||..|.||
RBAM_032090__    295 GGTGTTGATCGCGTTATTCTCGGCAGCTCGGCCGTTTCCGATCCGGCATT    344

BSNT_05307___    345 TGTCAAAAAAATGCTGAAACAATATGGCGAGAAAATTGCAATCGGACTGG    394
                     |||.||.|..||||||||||||||.||||..|||||.||.|||||.||.|
RBAM_032090__    345 TGTGAAGAGCATGCTGAAACAATACGGCGGCAAAATCGCGATCGGTCTTG    394

BSNT_05307___    395 ATGCGAGAAACGGTTTTGTTTCAACAGAGGGATGGCTGGAAACATCAACC    444
                     ||||.||.|||||.|.|||.||.||.||.||.|||||||||||||    |
RBAM_032090__    395 ATGCAAGGAACGGATATGTCTCGACGGAAGGCTGGCTGGAAACAT----C    440

BSNT_05307___    445 CT---TAA-GGCAACTGAACTGGGC----AAAGAGCTAGCCAATGAAGGT    486
                     ||   ||| |||..|.||.||||||    ||...|| .|||   |||||.
RBAM_032090__    441 CTCGGTAAGGGCGGCCGATCTGGGCCGTGAATTGGC-GGCC---GAAGGG    486

BSNT_05307___    487 GCGGAAGTCTTTATTTTTACTGACATCGCGACAGATGGAATGCTGTCAGG    536
                     ||||||..|||.|||||.||.||.||.||.||.||.||.|||||||||||
RBAM_032090__    487 GCGGAAACCTTCATTTTCACGGATATTGCAACTGACGGCATGCTGTCAGG    536

BSNT_05307___    537 CCCAAATGTTAAAAGTACGGTCGAGCTTGCGAAGGAAACGGGGAAATCGG    586
                     .||.||..|..||||.||.||..||||.||.||.|.||||||.|||.|.|
RBAM_032090__    537 ACCGAACATCGAAAGCACCGTTCAGCTCGCAAAAGCAACGGGAAAAACCG    586

BSNT_05307___    587 TGATCGCTTCAGGCGGAGTCAGCTCCGTCACGGATCTCGAAGCCCTCGCT    636
                     |.|||||||||||||||||||||||.|||.|.||.|||.||||.||.||.
RBAM_032090__    587 TCATCGCTTCAGGCGGAGTCAGCTCAGTCGCCGACCTCAAAGCACTGGCC    636

BSNT_05307___    637 CGCT---ATGAGGCGGACGGCGTCTCTGGAGCGATCATCGGAAAAGCGCT    683
                     ||||   |.||.||   ||||||.||.||||||||.||||||||||||||
RBAM_032090__    637 CGCTTCAAAGACGC---CGGCGTATCGGGAGCGATTATCGGAAAAGCGCT    683

BSNT_05307___    684 GTATACCAATCAGTTTACGCTGAGTGAGGCGCTTGAAAGGGTGAAG--CG    731
                     ||||||.||.||.|||||..||..|||.|||||.....||||||||  ||
RBAM_032090__    684 GTATACAAAACAATTTACATTGGCTGAAGCGCTCAGCGGGGTGAAGGACG    733

BSNT_05307___    732 CAAATGA    738
                     |  ||||
RBAM_032090__    734 C--ATGA    738


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