Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05299 and RBAM_032030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:44
# Commandline: needle
# -asequence dna-align/BSNT_05299___yvcD.1.9828.seq
# -bsequence dna-align/RBAM_032030___yvcD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05299___yvcD-RBAM_032030___yvcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05299___yvcD-RBAM_032030___yvcD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05299___yvcD
# 2: RBAM_032030___yvcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1506
# Identity: 1098/1506 (72.9%)
# Similarity: 1098/1506 (72.9%)
# Gaps: 102/1506 ( 6.8%)
# Score: 3901.5
#
#
#=======================================
BSNT_05299___ 1 GTGGGAAAACACACTTCTGAACATAAAAATCACGCACAAATTGTCCAGCT 50
|||||||||||||||||||||||.|||||.|||||.||||||||||||||
RBAM_032030__ 1 GTGGGAAAACACACTTCTGAACAGAAAAAGCACGCGCAAATTGTCCAGCT 50
BSNT_05299___ 51 GCTTCAAGATGGACAATATTTTTTTCATAAAGGCTTGAAAGCGTATAAAG 100
||||||.|||||||||||||||||||||||||||||.|||||.|||||||
RBAM_032030__ 51 GCTTCAGGATGGACAATATTTTTTTCATAAAGGCTTAAAAGCATATAAAG 100
BSNT_05299___ 101 AGCGCAATCTAAAACGGGCAAGCAAACTGATTCAGCGCGCGGTTCATTTG 150
||||.|||.||||.|||||.|||||||||||||||||.||.||.||..|.
RBAM_032030__ 101 AGCGGAATTTAAAGCGGGCCAGCAAACTGATTCAGCGGGCCGTCCACCTC 150
BSNT_05299___ 151 GAGCCGGAGGATTCAGAGATGCTTTCACAGCTTGCGGTCATTTATTCGGA 200
||||||.|.|||||.||.|||||.||.|.|||.||.|||||||||||.||
RBAM_032030__ 151 GAGCCGAATGATTCCGAAATGCTGTCCCGGCTGGCCGTCATTTATTCTGA 200
BSNT_05299___ 201 AATGGGCCAGTATCAAGAGTCGAACGATCTTCTTGACTATATCATGGCAA 250
|||||||||.||.||..||||.||.||.||..|.||||.|||..|||..|
RBAM_032030__ 201 AATGGGCCACTACCAGCAGTCAAATGAGCTGTTCGACTTTATTTTGGTGA 250
BSNT_05299___ 251 ATCTGGAGGCCGAAATGCCGGAGTGCCATTACTTTAAAGCGAATAACTTT 300
|.|||.|.|..||||||||.|||||.||||||||||||||||||||.||.
RBAM_032030__ 251 ACCTGAAAGAAGAAATGCCCGAGTGTCATTACTTTAAAGCGAATAATTTC 300
BSNT_05299___ 301 GCCCATCTGGGGCTCTTCCAGGAAGCTTATAAAGAAGCGGCCGCTTATTC 350
||.|||.||||.|||||.||||||||.||.||||||||.||.||||||||
RBAM_032030__ 301 GCGCATTTGGGACTCTTTCAGGAAGCATACAAAGAAGCAGCGGCTTATTC 350
BSNT_05299___ 351 TGATGCGGACCCGGATGGTGAATTCGCCGAAGAAAACGATAGTCTGCTTG 400
.|||||.||.|||||.|||||||||..||||||||..||.|.||||.|.|
RBAM_032030__ 351 AGATGCCGATCCGGACGGTGAATTCAGCGAAGAAATTGAAAATCTGATGG 400
BSNT_05299___ 401 A---TTTGCTCGATTTAGGAGACGACGGCATTG---AGGATTCGTTGTAT 444
| |||| |||||.||.||.|..|| || |.||.|||.|.|||
RBAM_032030__ 401 AGCTTTTG---GATTTCGGCGAAGCGGG---TGAAAACGAATCGCTCTAT 444
BSNT_05299___ 445 GATCAGGATGAACTGCTGGTGAAACAGGATCGGGCAAAGTCATTGCTGGA 494
||.||||||||.||||||.|.|..||||||||||||||..|..|.||.||
RBAM_032030__ 445 GACCAGGATGAGCTGCTGATCAGGCAGGATCGGGCAAAAGCGCTTCTTGA 494
BSNT_05299___ 495 AAGCGGCCAGCTTGCTGAAGCGGTTGCGGCGCTTGAGGAAATCACAGCTG 544
.||||||||||||..|||||||||||....||||||.||.||.||.||.|
RBAM_032030__ 495 GAGCGGCCAGCTTCATGAAGCGGTTGTCATGCTTGAAGAGATTACGGCCG 544
BSNT_05299___ 545 AATATCCGGAGCTTTGGTCAGCATACAACAATCTCGCGCTTGCCTATTTC 594
|.||.||.|||||||||||.|||||||||||.||.|||||.||.||.||.
RBAM_032030__ 545 ATTACCCCGAGCTTTGGTCTGCATACAACAACCTGGCGCTCGCTTACTTT 594
BSNT_05299___ 595 TATTCAGGAAACGTTGTAAAAGCGAAGCAAACCGCTTAT--GAAGTGCTT 642
||.|||||.||.||...|||||||||.|||||.| ||| |||||||||
RBAM_032030__ 595 TACTCAGGCAATGTCACAAAAGCGAAACAAACAG--TATTCGAAGTGCTT 642
BSNT_05299___ 643 TCTCATAATGAAGGAAATCTTCACGCCTTATGCAATCTTCTCGTTTTCTA 692
....|.||||||||.|||||.||.|||.|.|||||.||.||.||.||||.
RBAM_032030__ 643 GAGAAAAATGAAGGCAATCTCCATGCCCTGTGCAACCTCCTTGTATTCTG 692
BSNT_05299___ 693 CTATTATGAAAGAGAAGACGAAAAAGTGGCGGAATTGAGTGATCAGCTCT 742
||||||.||.||.|||||.||||||||.|..||||||||.|...|.|||.
RBAM_032030__ 693 CTATTACGAGAGGGAAGATGAAAAAGTCGGAGAATTGAGCGGAAAACTCG 742
BSNT_05299___ 743 CCAATGTCTATCCGATGCTATTGGAGCAGCGTTATAAATTGGGTGCTAC- 791
|||||||.||||||||..||||.||.|||||.|||||..||||.||.||
RBAM_032030__ 743 CCAATGTGTATCCGATTTTATTCGAACAGCGCTATAAGCTGGGGGCGACG 792
BSNT_05299___ 792 CTTGGCACTTGTCGGCCGCTACGAGATCGGATATAAATGGCTCAAATCAT 841
||| ||.|||||||||.|..|.||..||||.||||||||||||...||..
RBAM_032030__ 793 CTT-GCGCTTGTCGGCAGACATGATCTCGGTTATAAATGGCTCCGTTCTC 841
BSNT_05299___ 842 TATATAAAATCGGCTTTGAAGGTGACGACACCTTCTTTTACTGGCTTTCA 891
|.||.||||.|||.||.|||||.|||||.||.||.|.|||||||||..|.
RBAM_032030__ 842 TTTACAAAAGCGGATTCGAAGGCGACGAAACGTTTTATTACTGGCTGGCC 891
BSNT_05299___ 892 TGCTCTGCTTATTTTACGGGACA-----TACCGACTTTGCCGAGACGATC 936
..|||.|| .||||||||| .||.||.|||||.||.||.||.
RBAM_032030__ 892 GCCTCAGC-----CTACGGGACAGGCCGCACAGAATTTGCGGAAACCATT 936
BSNT_05299___ 937 TGGAGAAAAGTCG-AGTCGCAATATCCCGGCGAAGACCGCCCGGCGCCTT 985
||||.|||.|.|| ||.|| |||.|||||....||||||.||.|||||||
RBAM_032030__ 937 TGGAAAAAGGCCGAAGCCG-AATTTCCCGAATCAGACCGGCCCGCGCCTT 985
BSNT_05299___ 986 GGATTGAGCGGAGGGAAGCTCTTCCTTCATCTGTGGAACAGCGTCTCGCA 1035
||...||||||..||||.|.||.|||.|.||..|.||||||||.||.||.
RBAM_032030__ 986 GGGCGGAGCGGCAGGAACCGCTGCCTGCTTCACTCGAACAGCGGCTTGCC 1035
BSNT_05299___ 1036 GCCTATTATATCAGCAGCACAAAGGGAGA----AACAGAGCATCTTGAA- 1080
||||||||||||||||||.|..|.||||| ||| ||.||||||
RBAM_032030__ 1036 GCCTATTATATCAGCAGCGCTGAAGGAGAGCGGAAC----CAGCTTGAAA 1081
BSNT_05299___ 1081 --------GCGGTGATACGCTCAAAGAGAATAACCG---CTCCTTTTGAA 1119
.|||..|.|||| .||| |.||.||||||
RBAM_032030__ 1082 AAGTTCTGACGGCAAAACGC------------GCCGTTTCACCGTTTGAA 1119
BSNT_05299___ 1120 AATCATTTTGTAAAGCTGCTTCT---------AAATGGAGATTCTGGGGC 1160
.|..||||.||.||.|||||.|| |||.||.|.|||.||
RBAM_032030__ 1120 CAAGATTTCGTCAAACTGCTGCTTTCCGGTGAAAAAGGCGCTTCAGG--- 1166
BSNT_05299___ 1161 TGCTGACGTTTCAGAGGATGCACTTTTCGCCTATCAAACGGTCAAACTAT 1210
|||.||.|..|||||.||.|||.|.||||..||||||||.||..
RBAM_032030__ 1167 ------CGTCTCCGGTGATGCGCTGTTCACGTATCGGACGGTCAAGCTTC 1210
BSNT_05299___ 1211 TAGAGCAAGCTGAAAAAGAAGAGA---TGAAAACAGAAGTCATGAGCTGC 1257
|.|||.||||.| |||..||.| |.|||||.||.||||||||||||
RBAM_032030__ 1211 TGGAGAAAGCGG---AAGCCGACAGTTTAAAAACTGACGTCATGAGCTGC 1257
BSNT_05299___ 1258 TGGGTTTTCCATGTCATCCAGCAAATTCGTGCAGTTGCT-CCGTTGA-AA 1305
||||||||.||.|||||.|||||.||.||.||.|..||| |||| | |.
RBAM_032030__ 1258 TGGGTTTTTCACGTCATTCAGCACATCCGCGCCGCCGCTGCCGT--ACAG 1305
BSNT_05299___ 1306 AATGAGAAAGGC-TGGGCAGCAGCCATCTGTTATATTTGGAAAGAAGCCC 1354
|||||| ..||| |||||.|||||||||...|||.|.|||||||||||..
RBAM_032030__ 1306 AATGAG-CGGGCATGGGCCGCAGCCATCGCATATGTATGGAAAGAAGCAA 1354
BSNT_05299___ 1355 ATGGC-AAGCAAGAC-ACGAAAAAAGACACAGCGGCCCGATT-CGGCATC 1401
|.||| || ||.|| |||||||||||.||.||.| |||.|| |||.||.
RBAM_032030__ 1355 ACGGCGAA--AAAACGACGAAAAAAGAAACGGCCG-CCGTTTACGGTATA 1401
BSNT_05299___ 1402 TCTCCGGCAA--CTTTGACGAAATATATGAAATATATTGATGATATTCTA 1449
.|.||||||| |||| |||||||.||.|.|.|.||.|||||||||.||
RBAM_032030__ 1402 ACCCCGGCAACCCTTT--CGAAATACATCAGACAAATAGATGATATTTTA 1449
BSNT_05299___ 1450 GAATAG 1455
|||||.
RBAM_032030__ 1450 GAATAA 1455
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.