Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05292 and RBAM_031980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:43
# Commandline: needle
# -asequence dna-align/BSNT_05292___yvcK.1.9828.seq
# -bsequence dna-align/RBAM_031980___yvcK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05292___yvcK-RBAM_031980___yvcK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05292___yvcK-RBAM_031980___yvcK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05292___yvcK
# 2: RBAM_031980___yvcK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1005
# Identity: 771/1005 (76.7%)
# Similarity: 771/1005 (76.7%)
# Gaps: 60/1005 ( 6.0%)
# Score: 3072.5
#
#
#=======================================
BSNT_05292___ 1 ATGTTACTCACCGGGACATTGAAAAGAGAAGCCGGA--AATAAGATGGGA 48
| ||||||
RBAM_031980__ 1 -----------------------------------ATGAATAAG------ 9
BSNT_05292___ 49 CAAAAGCCGAAAATCGCAATCTTTGGCGGCGGTACAGGTCTTTCTGTATT 98
||||||||||||||||||||.||||||||.||.|||||.||.||..|
RBAM_031980__ 10 ---AAGCCGAAAATCGCAATCTTCGGCGGCGGAACGGGTCTGTCCGTGCT 56
BSNT_05292___ 99 GCTTCGGGGCCTAAAGCATAAACCCGTTGACATCACGGCCATTGTAACAG 148
|||||||||..||||||||||.||||||||.||.|||||.|||||.||||
RBAM_031980__ 57 GCTTCGGGGATTAAAGCATAAGCCCGTTGATATTACGGCGATTGTGACAG 106
BSNT_05292___ 149 TTGCCGATGATGGGGGAAGCTCTGGCCGTCTGCGGAATGAACTGAAAATT 198
||||.|||||.||.|||||.||.||||||||||||.|||||||..|||||
RBAM_031980__ 107 TTGCTGATGACGGCGGAAGTTCAGGCCGTCTGCGGGATGAACTTCAAATT 156
BSNT_05292___ 199 CCGCCTCCCGGAGACATCAGAAATGTGCTTGCCGCTTTATCCGATGTGGA 248
|||||.||.||.||||||.|.||.||.||.||.|||||.||.|||||.||
RBAM_031980__ 157 CCGCCGCCGGGTGACATCCGTAACGTACTGGCTGCTTTGTCAGATGTTGA 206
BSNT_05292___ 249 GCCGCTTGTTGAAGATCTTTTTCAGCACCGCTTCAATAAAGGGAATGACT 298
||||||.||||||.||||.|||||||||||.|||||.|||||.|..||||
RBAM_031980__ 207 GCCGCTCGTTGAAAATCTGTTTCAGCACCGTTTCAACAAAGGAAGCGACT 256
BSNT_05292___ 299 TAACAGGCCATTCTCTCGGGAATTTGATTTTGGCAGCGATGACAAATATA 348
||||.||.|||||.|||||.||||||||||||||||||||||||||||||
RBAM_031980__ 257 TAACCGGACATTCGCTCGGCAATTTGATTTTGGCAGCGATGACAAATATA 306
BSNT_05292___ 349 ACCGGTGATTTTTTTCACGCTGTCACAGAAATGAGCAAGGTGCTGAATGT 398
|||||||||||.||||||||||||||.|||||||||||||||||||||||
RBAM_031980__ 307 ACCGGTGATTTCTTTCACGCTGTCACCGAAATGAGCAAGGTGCTGAATGT 356
BSNT_05292___ 399 CAGAGGAAAGGTTTTGCCGGCTGCCAATGCCAGTGTCGTTTTGCATGCTG 448
|.|.||.|..||..||||.||||||||..|||||||||||.|.||.||||
RBAM_031980__ 357 CCGCGGCAGAGTGCTGCCTGCTGCCAACACCAGTGTCGTTCTTCACGCTG 406
BSNT_05292___ 449 AGATGGAAGATGGCCGCGTGGTCTCAGGCGAGTCAACGATCCCGGAATAC 498
|.|||||.||.||.|..||.|||||.||.||.||.||.|||||....|||
RBAM_031980__ 407 AAATGGAGGACGGGCAGGTCGTCTCCGGAGAATCGACAATCCCTTCTTAC 456
BSNT_05292___ 499 GGACAGCGCATTAAGCGTGTTTTTCTCACGCCTGAACAGATTGATCCGCT 548
||.|||||.|||||.||.||.|||||.|||||||||.|.|||||||||||
RBAM_031980__ 457 GGCCAGCGGATTAAACGGGTGTTTCTTACGCCTGAAAAAATTGATCCGCT 506
BSNT_05292___ 549 GCCGGAAACAATAGACGTAATCAGGGAAGCGGATTTGATTATTATCGGCC 598
.||||||||.||.|||||.|||.|..|.||.|||||.||.||||||||.|
RBAM_031980__ 507 CCCGGAAACGATTGACGTCATCCGTCAGGCCGATTTAATCATTATCGGTC 556
BSNT_05292___ 599 CGGGAAGTCTCTATACAAGCATTCTGCCCAATTTGCTCGTCCCAAAAATC 648
|||||||.||.||.|||||||||||.||.|||.|||||||.||.||||||
RBAM_031980__ 557 CGGGAAGCCTGTACACAAGCATTCTTCCGAATCTGCTCGTACCGAAAATC 606
BSNT_05292___ 649 GGGGAAGAAGTGATAAAGGCGCCGGCGAAAAAAGTATACATTTGCAACGT 698
||.||.|||||..|.|||||..||||.|||||||||||.||.||||||||
RBAM_031980__ 607 GGAGAGGAAGTCGTCAAGGCTGCGGCCAAAAAAGTATATATATGCAACGT 656
BSNT_05292___ 699 GATGACTCAGCCCGGCGAAACGCTCCATTACACCGCTGCTGATCATGTGA 748
.|||||.||||||||.||.|||||.||.||||..||.||.||.|||||.|
RBAM_031980__ 657 CATGACACAGCCCGGAGAGACGCTGCAATACAGTGCGGCCGACCATGTCA 706
BSNT_05292___ 749 AAGCGCTCAATCAGCATATGG-GCTGCGGTTTTATTGATACGATATTAGT 797
|.|||||.||..|.||||||| ||.||.| |||||.||.|||||.|||.|
RBAM_031980__ 707 AGGCGCTGAACGATCATATGGAGCAGCCG-TTTATCGACACGATCTTAAT 755
BSNT_05292___ 798 GAACAGTGAAGACATTCCCGACGAAATAAAACGTAAGTA--CGAAATGGA 845
.||||.|||.||.||.||.||||||||.|||.|.||.|| ||||| ||
RBAM_031980__ 756 CAACAATGAGGAGATCCCTGACGAAATCAAAAGCAAATATGCGAAA--GA 803
BSNT_05292___ 846 ATCGGCGCGTCCTGTTGATTTTGATATCGAAGAGCTGAAAGCGATGGGGC 895
...|||.||.||.||.||.||..||.|.|||.||||||||.|.|||||||
RBAM_031980__ 804 GCTGGCCCGGCCCGTCGACTTCAATGTTGAAAAGCTGAAATCCATGGGGC 853
BSNT_05292___ 896 TTGAAGTCATCAGAGATCAAATTGTAACGTATAAAAATGACGTAATACGT 945
||||.||||||||.|||||.|||.|.|||||||||||||.||||||.|||
RBAM_031980__ 854 TTGAGGTCATCAGGGATCAGATTATCACGTATAAAAATGGCGTAATCCGT 903
BSNT_05292___ 946 CACGATACACATAAAGTGGCCTCTCTTCTTGTTGATTTACTGAAAGAATG 995
||||||||||||||||||||.|||||||||||.||||||.| ||| .|
RBAM_031980__ 904 CACGATACACATAAAGTGGCTTCTCTTCTTGTCGATTTATT--AAG--GG 949
BSNT_05292___ 996 A---- 996
|
RBAM_031980__ 950 ACTAG 954
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