Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05289 and RBAM_031950

See Amino acid alignment / Visit BSNT_05289 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05289___yvcN.1.9828.seq
#    -bsequence dna-align/RBAM_031950___yvcN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05289___yvcN-RBAM_031950___yvcN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05289___yvcN-RBAM_031950___yvcN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05289___yvcN
# 2: RBAM_031950___yvcN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 804
# Identity:     509/804 (63.3%)
# Similarity:   509/804 (63.3%)
# Gaps:         105/804 (13.1%)
# Score: 1457.0
# 
#
#=======================================

BSNT_05289___      1 ATGAGTGACTTTCTAAAAGACTGCTTTCAGAAAATCGGCTGGGAGAAAGA     50
                     ||||.|||.|||||.|||||.||.|.|||.|..||.||||||||.||.||
RBAM_031950__      1 ATGAATGAGTTTCTGAAAGATTGTTATCAAACGATAGGCTGGGAAAAGGA     50

BSNT_05289___     51 T------CATGTCAGCTTCGGCGATCTTCCC---CTTTTTCTCAAA-GCA     90
                     |      .||.|||||       |.|.|.||   .|||||   ||| ||.
RBAM_031950__     51 TTCCCTCGATTTCAGC-------AACCTGCCGGAGTTTTT---AAAGGCG     90

BSNT_05289___     91 ATGGCATACCGTTTTCCATTCGAAAACCGTGCCGTACTTG--CAAAAGAG    138
                     .|.|||||.||.|||||.||.|||||.||.||.|| .|||  |||||.||
RBAM_031950__     91 CTCGCATATCGGTTTCCGTTTGAAAATCGCGCGGT-TTTGTCCAAAAAAG    139

BSNT_05289___    139 AATTATAAGATCACAAAAGAAGAGCTATGGCGACGTCTGCTCAAAGATCA    188
                     || |||.|..||||.|||||||..||.|||||.|...||.|.||.||.|.
RBAM_031950__    140 AA-TATGACGTCACGAAAGAAGGACTGTGGCGGCACATGGTGAAGGAACC    188

BSNT_05289___    189 GCACGGCGGCCTATGCTACGATTTAAATGGTTTTCTTTATTTTGTCTTGC    238
                     .||.||||||||.||.||.||.||.||.||..|.||||||||..||.||.
RBAM_031950__    189 TCATGGCGGCCTTTGTTATGACTTGAACGGACTGCTTTATTTCATCCTGA    238

BSNT_05289___    239 GTGAGGCTGGGTTTCATGTGAAGCTCATTCGAGGAACGGTTTATGCAGGC    288
                     ..||.||.||.|||.||||.||..|.||.||.||||||||     |.|| 
RBAM_031950__    239 AAGATGCCGGATTTGATGTCAAATTGATCCGCGGAACGGT-----CTGG-    282

BSNT_05289___    289 GATCAAGAGGGATGGGCACTAGAAGGGACGCATGCTGCTGTATGGCTGTC    338
                        .||.|.||.|||||.||....||.||.|||||.||.|||...||.||
RBAM_031950__    283 ---AAAAACGGCTGGGCGCTGCCCGGCACACATGCGGCCGTACTTCTTTC    329

BSNT_05289___    339 TGC-----GGAAAACGGCGATTACCTCGTTGATATCGGCTTCGGCATCAA    383
                     .||     ||||     .||.|||.|||.||||...|||||||||.||||
RBAM_031950__    330 CGCCGGGGGGAA-----TGAGTACATCGCTGATGCAGGCTTCGGCCTCAA    374

BSNT_05289___    384 CCTGGCGCTCCAGCCGATACCGCTTTCCGGA---GAAACGGTACAGTCAC    430
                     .||.||..|.|||||..|.|||.|.||.|||   ||.||||||   |||.
RBAM_031950__    375 TCTCGCCATGCAGCCTGTGCCGATGTCGGGAGACGAGACGGTA---TCAG    421

BSNT_05289___    431 CAGTCGGGTCATTCCGAATCAAAAGAGAAGAGACAGAAAAGGGCAGCCAT    480
                     |.|.|||..|.|||||..|.|..|.|||||||||.|||...||  |.|||
RBAM_031950__    422 CGGCCGGAGCGTTCCGCGTGAGGATAGAAGAGACGGAATTCGG--GACAT    469

BSNT_05289___    481 GTTCTGCT---GATGGACAAGGGAGAAGGCTGGCAAATCGGGTACGCCTT    527
                      ..|||||   .|||.||||.||.||.||||||||.|..||.|||||.||
RBAM_031950__    470 -ACCTGCTTGAAATGAACAAAGGGGACGGCTGGCAGACAGGTTACGCATT    518

BSNT_05289___    528 TACTCTTGAAGAGAGTGATCTCGGTGATTTAGATAACATGAAG-----GA    572
                     |.|.||||||||.|      |||.|||   |.|..||.|.|||     ||
RBAM_031950__    519 TTCGCTTGAAGAAA------TCGATGA---AAAGGACCTCAAGTCTATGA    559

BSNT_05289___    573 CATCATTCACTCT-----CATGAAAAATCTCCTTTTAACAAATCCCCGCT    617
                      |.||..||.|||     ||||||...||||||||.||||||..||.|||
RBAM_031950__    560 -AACAAACAATCTTTGAACATGAACGCTCTCCTTTCAACAAACGCCTGCT    608

BSNT_05289___    618 TGCCTCAAAGCTGACGCCGAGCGGAAGG----ATGGTCATGTCAGAGCGC    663
                     |||.||.||||.|||    |.|||||||    |||||..||||.||.|||
RBAM_031950__    609 TGCTTCTAAGCGGAC----ACCGGAAGGGCACATGGTTCTGTCTGAACGC    654

BSNT_05289___    664 CATTTTACGATTCATGAAA----------ACGGCAGTGACATTCAAAAAA    703
                     .||.|.||.||  |..|||          |||||.|        ||||.|
RBAM_031950__    655 AATATAACAAT--AAAAAAACACGATGGCACGGCGG--------AAAACA    694

BSNT_05289___    704 G-TGACATTGGCCCTTCAGAATTTGAAGAGAAATTAAATACTCATTTTTT    752
                     | .|| ||.|.||..|||||.||||||||.|||||.|.|.||||||||.|
RBAM_031950__    695 GCAGA-ATAGACCGGTCAGAGTTTGAAGAAAAATTTACTGCTCATTTTAT    743

BSNT_05289___    753 GTAA    756
                     .|.|
RBAM_031950__    744 ATGA    747


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05289 and RBAM_031950

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
