Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05282 and RBAM_031930

See Amino acid alignment / Visit BSNT_05282 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:43
# Commandline: needle
#    -asequence dna-align/BSNT_05282___yvcT.1.9828.seq
#    -bsequence dna-align/RBAM_031930___yvcT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05282___yvcT-RBAM_031930___yvcT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05282___yvcT-RBAM_031930___yvcT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05282___yvcT
# 2: RBAM_031930___yvcT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 984
# Identity:     743/984 (75.5%)
# Similarity:   743/984 (75.5%)
# Gaps:          27/984 ( 2.7%)
# Score: 2731.5
# 
#
#=======================================

BSNT_05282___      1 TTGAAACCATTTGTATTTATCACAAAACCGAT---TCCTGAAGAGATTGA     47
                     ||||||||.|.||||||.|||.|.||||||||   .||.||||   |.||
RBAM_031930__      1 TTGAAACCCTATGTATTCATCGCGAAACCGATACCGCCGGAAG---TCGA     47

BSNT_05282___     48 AGCATTCATCGGAGAACATTGCCGTTATGAAGTATGGCAGGAGGATACGC     97
                     |..|.|.||.||.||.||||||||.|||||..|.|||.|.||.|||||..
RBAM_031930__     48 ACAAATGATAGGCGAGCATTGCCGGTATGACATCTGGAAAGAAGATACCA     97

BSNT_05282___     98 TTCCGAGTGACGTGCTATTTGAAAAATTAAAAGAAGCGGAAGGGCTTTTA    147
                     ||||.|..||.|..||.|..||||||.|.|||||.||.||||||||..| 
RBAM_031930__     98 TTCCAAAAGAGGAACTGTACGAAAAAATGAAAGATGCTGAAGGGCTGCT-    146

BSNT_05282___    148 ACATCAGGGACGTCCGGACCGTCAATCAATCGTGAGTTGCTGGAACACGC    197
                             |||.||||||.||.|.||..|..||||.||.|||||.|||||
RBAM_031930__    147 --------GACATCCGGAACGGCGATTGACAGTGATTTACTGGATCACGC    188

BSNT_05282___    198 TCCTAAGCTCAAAGTGGTCAGCAACCAATCAGTAGGCTACGATAATTTCG    247
                     .||.|||||.||.||.||||||||..|.||.||.|||||.||||||||..
RBAM_031930__    189 GCCGAAGCTGAAGGTCGTCAGCAATAATTCTGTCGGCTATGATAATTTTA    238

BSNT_05282___    248 ATATAGAAGCAATGAAAGAAAGAGGAGTAATCGGCACTCATACACCTTAT    297
                     ||||.||||.|||||||..|.|.||.||..|||||||.|||||.||.||.
RBAM_031930__    239 ATATTGAAGAAATGAAAAGACGCGGGGTTGTCGGCACGCATACGCCGTAC    288

BSNT_05282___    298 ACACTGGATGACACAGTTGCAGATCTGGCCTTTTCTCTGATTCTATCTTC    347
                     ||..|.||||||||.||.||.||||||||.|||||..|.||.||.|||||
RBAM_031930__    289 ACCTTAGATGACACTGTCGCTGATCTGGCTTTTTCATTAATCCTGTCTTC    338

BSNT_05282___    348 CGCCAGACGTGTTGCCGAACTTGACCGTTTTGTCAGGGCAGGAAAATGGG    397
                     |||||||||.|||||||||.|.||.||.||.|||.|.||.||.|||||||
RBAM_031930__    339 CGCCAGACGGGTTGCCGAATTGGATCGATTCGTCCGCGCCGGCAAATGGG    388

BSNT_05282___    398 GGACCGTGGAAGAGGAAGCGCTTTTCGGAATTGATGTTCATCATCAAACA    447
                     |.|||||.||.||.|||.|.||||||||.||.|||||.||.|||||.|||
RBAM_031930__    389 GAACCGTTGAGGAAGAATCTCTTTTCGGTATGGATGTCCACCATCAGACA    438

BSNT_05282___    448 TTAGGCATTATCGGCATGGGCAGAATAGGAGAACAAGCAGCGAGACGCGC    497
                     |||||.||||||||||||||||||||.||.||||||||.||.|.|||.||
RBAM_031930__    439 TTAGGAATTATCGGCATGGGCAGAATCGGTGAACAAGCTGCCAAACGGGC    488

BSNT_05282___    498 CAAATTTGGTTTTGATATGGAAGTGCTTTATCATAACCGACATC-GCAAA    546
                     .|||||.||.||.||||||||.|||||.|||.||||.|| ||.| |.|||
RBAM_031930__    489 AAAATTCGGCTTCGATATGGACGTGCTGTATTATAATCG-CAGCAGAAAA    537

BSNT_05282___    547 CAAGAAAC--AGAAGATAGCA-TCGGCGTTAAGTATGCAGAGCTT-GATA    592
                     |..||..|  |||||   |.| ||||.||||..|||||.|| ||| ||||
RBAM_031930__    538 CCGGACGCTGAGAAG---GAACTCGGGGTTACATATGCCGA-CTTAGATA    583

BSNT_05282___    593 CATTGCTGGAGCGATCTGATTTTATTCTTCTCATTACGCCGCTGACTGAT    642
                     ||.|||||.|...|||.||.|||.|.||..|.|||||||||||.|||||.
RBAM_031930__    584 CACTGCTGAAAACATCAGACTTTGTGCTGTTAATTACGCCGCTTACTGAC    633

BSNT_05282___    643 GAAACCTATCACATGATAGGAGAACGCGAATTTAAGTTGATGAAGGATTC    692
                     |||||.|||||.|||||.|||||.||.||||||||.||||||||.|||.|
RBAM_031930__    634 GAAACGTATCATATGATGGGAGAGCGGGAATTTAAATTGATGAAAGATAC    683

BSNT_05282___    693 AGCAATTTTCGTCAATATTTCCCGGGGAAAGACAGTTGATGAGAAAGCAC    742
                     .|||..|||||||||||||||||||||||||||.||||||||||||||.|
RBAM_031930__    684 GGCATGTTTCGTCAATATTTCCCGGGGAAAGACGGTTGATGAGAAAGCGC    733

BSNT_05282___    743 TGATTCGCGCTCTTCAGGAAGGCTGGATCAGGGGAGCCGGCCTAGATGTA    792
                     |.||.|||||..|.|||||.||||||||.|..||.|||||..|||||||.
RBAM_031930__    734 TCATCCGCGCATTGCAGGAGGGCTGGATAAAAGGCGCCGGTTTAGATGTG    783

BSNT_05282___    793 TACGAAAAAGAGCCTGTCTCCCAAGATAATCCGCTCCTGCAGCTGGATAA    842
                     |..|||||||||||..||.||.||||.||||||||||||||||||||.||
RBAM_031930__    784 TTTGAAAAAGAGCCGATCGCCGAAGACAATCCGCTCCTGCAGCTGGAAAA    833

BSNT_05282___    843 TGTCACGCTGCTTCCTCATATCGGTTCAGCAACAGCTAAAGTGCGCTTCA    892
                     .|||||..|||||||.||||||||.||||||||.||.|||.|.||.||.|
RBAM_031930__    834 CGTCACATTGCTTCCGCATATCGGGTCAGCAACGGCAAAAATCCGTTTGA    883

BSNT_05282___    893 ACATGTGTAAACAGGCTGCCGAAAATATGATCGCAGCCATTCAAGGACAA    942
                     |.||||..||.||.||.||..||||.|||||.|..|||.|..|.|||.||
RBAM_031930__    884 ATATGTTCAAGCAAGCCGCACAAAACATGATTGACGCCGTATACGGAAAA    933

BSNT_05282___    943 ACACCGAAAAATCTCAC-AAGAGAATTTCAATAA    975
                     ||.||||||||.||||| ||| ||||||||||.|
RBAM_031930__    934 ACGCCGAAAAACCTCACGAAG-GAATTTCAATGA    966


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05282 and RBAM_031930

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
