Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05259 and RBAM_031850

See Amino acid alignment / Visit BSNT_05259 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05259___clpP.1.9828.seq
#    -bsequence dna-align/RBAM_031850___clpP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05259___clpP-RBAM_031850___clpP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05259___clpP-RBAM_031850___clpP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05259___clpP
# 2: RBAM_031850___clpP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 598
# Identity:     520/598 (87.0%)
# Similarity:   520/598 (87.0%)
# Gaps:           5/598 ( 0.8%)
# Score: 2277.0
# 
#
#=======================================

BSNT_05259___      1 ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGC     50
                     |||||||||||||||||||||||||||||||||||||||||.||||||||
RBAM_031850__      1 ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGC     50

BSNT_05259___     51 GTATGACATTTATTCTCGTCTATTAAAGGATCGTATCATCATGCTTGGAT    100
                     .|||||||||||.||.|||||.||.|||||.|||||.|||||||||||||
RBAM_031850__     51 TTATGACATTTACTCCCGTCTTTTGAAGGACCGTATTATCATGCTTGGAT    100

BSNT_05259___    101 CTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTC    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_031850__    101 CTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTC    150

BSNT_05259___    151 TTAGCAGCAGAAGACCCTGAAAAAGAAATTTCTCTTTACATCAACAGCCC    200
                     .|.|.|||.|||||||||||||||||.|||||..||||.||.||||||||
RBAM_031850__    151 CTTGAAGCGGAAGACCCTGAAAAAGATATTTCCATTTATATTAACAGCCC    200

BSNT_05259___    201 GGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACCATGCAGTTTA    250
                     .|||||.||.||.||.|||||||||||.|||||||||||.||||||||.|
RBAM_031850__    201 TGGCGGATCAATCACTGCCGGTATGGCCATCTATGATACAATGCAGTTCA    250

BSNT_05259___    251 TTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGC    300
                     ||||.|||||.|||||.||.||.||.|||||||||||.||.||.|||||.
RBAM_031850__    251 TTAAACCGAAAGTATCCACGATCTGCATCGGTATGGCCGCTTCTATGGGA    300

BSNT_05259___    301 GCTTTCCTGCTTGCAGCCGGCGAAAAAGGCAAACGCTATGCGCTTCCAAA    350
                     ||.||..|.|||||||||||.||||||||||||||.||.||||||||.||
RBAM_031850__    301 GCATTTTTACTTGCAGCCGGAGAAAAAGGCAAACGTTACGCGCTTCCTAA    350

BSNT_05259___    351 CAGTGAAGTCATGATTCACCAGCCACTTGGCGGTGCGCAAGGTCAGGCGA    400
                     |||||||||.||||||||||||||.||||||||.||||||||.|||||||
RBAM_031850__    351 CAGTGAAGTTATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA    400

BSNT_05259___    401 CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAACTA    450
                     |||||||||||||.||.||.|||||||||||||||||||||||||||.||
RBAM_031850__    401 CAGAAATTGAAATCGCGGCAAAACGCATTCTCTTGCTTCGCGACAAATTA    450

BSNT_05259___    451 AACAAAGTCCTTGCTGAACGTACTGGCCAGCCGCTTGAAGTGATCGAACG    500
                     ||||||||.||||||||||||||.|||||||||||||||||.||.||.||
RBAM_031850__    451 AACAAAGTGCTTGCTGAACGTACCGGCCAGCCGCTTGAAGTCATTGAGCG    500

BSNT_05259___    501 CGACACAGACCGTGATAACTTCAAGTCTGCTGAAGAAGCGCTT-GAATAC    549
                     |||.||||||||.||.||||||||.||.|||||.||||| ||| ||||||
RBAM_031850__    501 CGATACAGACCGCGACAACTTCAAATCAGCTGATGAAGC-CTTAGAATAC    549

BSNT_05259___    550 GGCCTGATTGACAAAATTTTGACTC---ACACAGAAGACAAAAAGTAA    594
                     |||.|.||.||.|||.|..||||.|   |.|||||||||.|.||||||
RBAM_031850__    550 GGCTTAATCGATAAAGTGCTGACACGCAATACAGAAGACCAGAAGTAA    597


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