Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06252 and RBAM_031700

See Amino acid alignment / Visit BSNT_06252 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:42
# Commandline: needle
#    -asequence dna-align/BSNT_06252___yyaP.1.9828.seq
#    -bsequence dna-align/RBAM_031700___ywjB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06252___yyaP-RBAM_031700___ywjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06252___yyaP-RBAM_031700___ywjB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06252___yyaP
# 2: RBAM_031700___ywjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity:     328/690 (47.5%)
# Similarity:   328/690 (47.5%)
# Gaps:         282/690 (40.9%)
# Score: 590.0
# 
#
#=======================================

BSNT_06252___      1 ATGA-----CAAATAACTTAAAACAGAGAAGAATCATTTTAGATTT----     41
                     ||||     |||              ||||.|.||.|||    |||    
RBAM_031700__      1 ATGAGCGGTCAA--------------AGAAAACTCGTTT----TTTACGG     32

BSNT_06252___     42 AGCAGTTACTTTAGATGGTTTTATTGAAGGGAAAAATGGAGAAGTT----     87
                     |||.||.|....||||||.|.|.|||...||.|||||     ..||    
RBAM_031700__     33 AGCTGTCAGCGCAGATGGCTATCTTGCGCGGGAAAAT-----CATTCTTT     77

BSNT_06252___     88 -GATTGGTGCATTAT-GGACCCTGATATGGG-----------GTTTACTG    124
                      |||||||   |.|| ||| .|||| |.|.|           |.||| ||
RBAM_031700__     78 AGATTGGT---TAATCGGA-ACTGA-AGGTGAAGACGGCACCGATTA-TG    121

BSNT_06252___    125 A---TTTCT-TAAATCAAATTGATACTATTTTAT-AT-AGCAGAAAAAGC    168
                     |   ||||| |.|||| ..|.|||||.|  |.|| || .|||||||||..
RBAM_031700__    122 AAGCTTTCTATGAATC-TGTCGATACGA--TCATCATGGGCAGAAAAACA    168

BSNT_06252___    169 TACGATTTATGGGGACAATA-------TATTCCAAAAGATGAAGACCCTG    211
                     |||||       |||| |||       ||||              .||||
RBAM_031700__    169 TACGA-------GGAC-ATATTGGTTTTATT--------------GCCTG    196

BSNT_06252___    212 ATACAGAAAAGGAACTT---TGGAAATTGGTTCATAGTAAAAAGAA--AT    256
                              |||||.||   |..|||  |||         ||||||  .|
RBAM_031700__    197 ---------AGGAATTTCCGTACAAA--GGT---------AAAGAATGCT    226

BSNT_06252___    257 ATGTTTTTTCCAGAACACAAAATGAGATTGA-------TAATCAAGCCAT    299
                     ||||.|||||..|          ||.|||||       ||.|.||  |||
RBAM_031700__    227 ATGTGTTTTCGCG----------GACATTGACCGGGCGTACTGAA--CAT    264

BSNT_06252___    300 AT----TTATAAATGATAATATTCTTGAAGA--------AGTAAATAA--    335
                     .|    ||           |||||.||||||        |.|..||||  
RBAM_031700__    265 GTGCGGTT-----------TATTCATGAAGAGCCTGCCGATTTTATAAAA    303

BSNT_06252___    336 --ATTGAA-----GAAAAAGTCTGGCAAAGACATCTGGCTATATGGT---    375
                       ||||||     ||.||     |||||....||.|||    ||.||   
RBAM_031700__    304 GCATTGAAACGCCGAGAA-----GGCAAGCGGATTTGG----ATTGTCGG    344

BSNT_06252___    376 --GGAGCGAGTCT-CATTACAAC---TTTT-----ATAAATTTGGGGCTT    414
                       ||||.|| ||| |  |.||.|   ||||     |.|||       |||
RBAM_031700__    345 CGGGAGTGA-TCTGC--TGCACCCGGTTTTGGAGGAAAAA-------CTT    384

BSNT_06252___    415 GTTGATGAATTTAGATTATCTATTCA------CCCTGTTGTTTTGGGAGA    458
                     ||.||||     ||.||||| |||||      |||.|||.|..|.||...
RBAM_031700__    385 GTCGATG-----AGTTTATC-ATTCAGATCGCCCCCGTTCTGCTCGGCCG    428

BSNT_06252___    459 AGGAAAACCGTTGTTTATTGATGT--AAAAC---AGA---GGATAAATTT    500
                     .||||        |||.||  |||  |||.|   |||   |||.|.|   
RBAM_031700__    429 CGGAA--------TTTCTT--TGTTCAAACCCGGAGACCGGGAGACA---    465

BSNT_06252___    501 AAAAATGG--TGAA-------------------TACAAGAACATTTTCCT    529
                           ||  ||||                   ||.|||  ||.|||.| 
RBAM_031700__    466 ------GGGCTGAAGCTGACTGATGTCAGGCGCTATAAG--CAATTTGC-    506

BSNT_06252___    530 CTGGCGTTGTGCAAATCGTTTATCATTGGAA-TG-GCTAA    567
                       ||.||  ||||      ||||     ||| || |.|.|
RBAM_031700__    507 --GGAGT--TGCA------TTAT-----GAAGTGAGATGA    531


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