Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06252 and RBAM_031700
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:42
# Commandline: needle
# -asequence dna-align/BSNT_06252___yyaP.1.9828.seq
# -bsequence dna-align/RBAM_031700___ywjB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06252___yyaP-RBAM_031700___ywjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06252___yyaP-RBAM_031700___ywjB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06252___yyaP
# 2: RBAM_031700___ywjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 328/690 (47.5%)
# Similarity: 328/690 (47.5%)
# Gaps: 282/690 (40.9%)
# Score: 590.0
#
#
#=======================================
BSNT_06252___ 1 ATGA-----CAAATAACTTAAAACAGAGAAGAATCATTTTAGATTT---- 41
|||| ||| ||||.|.||.||| |||
RBAM_031700__ 1 ATGAGCGGTCAA--------------AGAAAACTCGTTT----TTTACGG 32
BSNT_06252___ 42 AGCAGTTACTTTAGATGGTTTTATTGAAGGGAAAAATGGAGAAGTT---- 87
|||.||.|....||||||.|.|.|||...||.||||| ..||
RBAM_031700__ 33 AGCTGTCAGCGCAGATGGCTATCTTGCGCGGGAAAAT-----CATTCTTT 77
BSNT_06252___ 88 -GATTGGTGCATTAT-GGACCCTGATATGGG-----------GTTTACTG 124
||||||| |.|| ||| .|||| |.|.| |.||| ||
RBAM_031700__ 78 AGATTGGT---TAATCGGA-ACTGA-AGGTGAAGACGGCACCGATTA-TG 121
BSNT_06252___ 125 A---TTTCT-TAAATCAAATTGATACTATTTTAT-AT-AGCAGAAAAAGC 168
| ||||| |.|||| ..|.|||||.| |.|| || .|||||||||..
RBAM_031700__ 122 AAGCTTTCTATGAATC-TGTCGATACGA--TCATCATGGGCAGAAAAACA 168
BSNT_06252___ 169 TACGATTTATGGGGACAATA-------TATTCCAAAAGATGAAGACCCTG 211
||||| |||| ||| |||| .||||
RBAM_031700__ 169 TACGA-------GGAC-ATATTGGTTTTATT--------------GCCTG 196
BSNT_06252___ 212 ATACAGAAAAGGAACTT---TGGAAATTGGTTCATAGTAAAAAGAA--AT 256
|||||.|| |..||| ||| |||||| .|
RBAM_031700__ 197 ---------AGGAATTTCCGTACAAA--GGT---------AAAGAATGCT 226
BSNT_06252___ 257 ATGTTTTTTCCAGAACACAAAATGAGATTGA-------TAATCAAGCCAT 299
||||.|||||..| ||.||||| ||.|.|| |||
RBAM_031700__ 227 ATGTGTTTTCGCG----------GACATTGACCGGGCGTACTGAA--CAT 264
BSNT_06252___ 300 AT----TTATAAATGATAATATTCTTGAAGA--------AGTAAATAA-- 335
.| || |||||.|||||| |.|..||||
RBAM_031700__ 265 GTGCGGTT-----------TATTCATGAAGAGCCTGCCGATTTTATAAAA 303
BSNT_06252___ 336 --ATTGAA-----GAAAAAGTCTGGCAAAGACATCTGGCTATATGGT--- 375
|||||| ||.|| |||||....||.||| ||.||
RBAM_031700__ 304 GCATTGAAACGCCGAGAA-----GGCAAGCGGATTTGG----ATTGTCGG 344
BSNT_06252___ 376 --GGAGCGAGTCT-CATTACAAC---TTTT-----ATAAATTTGGGGCTT 414
||||.|| ||| | |.||.| |||| |.||| |||
RBAM_031700__ 345 CGGGAGTGA-TCTGC--TGCACCCGGTTTTGGAGGAAAAA-------CTT 384
BSNT_06252___ 415 GTTGATGAATTTAGATTATCTATTCA------CCCTGTTGTTTTGGGAGA 458
||.|||| ||.||||| ||||| |||.|||.|..|.||...
RBAM_031700__ 385 GTCGATG-----AGTTTATC-ATTCAGATCGCCCCCGTTCTGCTCGGCCG 428
BSNT_06252___ 459 AGGAAAACCGTTGTTTATTGATGT--AAAAC---AGA---GGATAAATTT 500
.|||| |||.|| ||| |||.| ||| |||.|.|
RBAM_031700__ 429 CGGAA--------TTTCTT--TGTTCAAACCCGGAGACCGGGAGACA--- 465
BSNT_06252___ 501 AAAAATGG--TGAA-------------------TACAAGAACATTTTCCT 529
|| |||| ||.||| ||.|||.|
RBAM_031700__ 466 ------GGGCTGAAGCTGACTGATGTCAGGCGCTATAAG--CAATTTGC- 506
BSNT_06252___ 530 CTGGCGTTGTGCAAATCGTTTATCATTGGAA-TG-GCTAA 567
||.|| |||| |||| ||| || |.|.|
RBAM_031700__ 507 --GGAGT--TGCA------TTAT-----GAAGTGAGATGA 531
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