Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05195 and RBAM_031690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:41
# Commandline: needle
# -asequence dna-align/BSNT_05195___pnbA.1.9828.seq
# -bsequence dna-align/RBAM_031690___pnbA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05195___pnbA-RBAM_031690___pnbA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05195___pnbA-RBAM_031690___pnbA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05195___pnbA
# 2: RBAM_031690___pnbA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1571
# Identity: 1005/1571 (64.0%)
# Similarity: 1005/1571 (64.0%)
# Gaps: 223/1571 (14.2%)
# Score: 3028.5
#
#
#=======================================
BSNT_05195___ 1 ATGACTCATCAAATAGTAACGACTCAA------TACGGCAAAGTAAAGGG 44
||||| ||.|.|.||...|||| |.|||| |
RBAM_031690__ 1 ATGAC------AAAACTTACCGTTCAAACCCGCTGCGGC----------G 34
BSNT_05195___ 45 CAC--AACGGAAAACAG--------------CGTACATAAGTGGAAAGGC 78
||| ||.|| |||.| ||.||| |||||.|||
RBAM_031690__ 35 CACTGAAAGG--AACTGCCGGCCGCGGTGCCCGCACA----TGGAAGGGC 78
BSNT_05195___ 79 ATCCCCTATGCCAAGCCGCCTGTCGGACAATGGC---GTTTTAAAGCACC 125
||.||.||.||.||||||||.||||||.| || |.||||||||.||
RBAM_031690__ 79 ATACCGTACGCGAAGCCGCCCGTCGGAGA---GCTCAGATTTAAAGCGCC 125
BSNT_05195___ 126 TGAGCCGCCTGAAGTGTGGGAAGATGT----CCTTGATGCCACAGCATAC 171
.||||||||.|.|...|||||.|..|| | |||||....|.|.|
RBAM_031690__ 126 GGAGCCGCCCGCACCTTGGGACGGCGTAAAAC----ATGCCGATTCGTTC 171
BSNT_05195___ 172 GGCCCTATTTGCCCGCAGCCGTCTGATTTGCTGTCACTTTCG-TATACTG 220
||.||..||||.|||||||||..||||.|||||||..|.||| |.|.|.|
RBAM_031690__ 172 GGACCGGTTTGTCCGCAGCCGGATGATATGCTGTCTATATCGTTTTCCGG 221
BSNT_05195___ 221 AGCTGCCCCGC--CAGTCCGAGGATTGCTTGTTTGTCAATGTATTTGCGC 268
||.||..|||| ||.||.||.||||||.|.|...|||||||.||.||.|
RBAM_031690__ 222 AGATGTACCGCCTCAATCTGAAGATTGCCTTTACCTCAATGTTTTCGCCC 271
BSNT_05195___ 269 CTGACACTCCA---AGCCAAAACCTGCCTGTCATGGTTTGGATTCACGGA 315
|.|| |.|| .||.||||...||||||||||||.|||||.|||||.
RBAM_031690__ 272 CCGA---TTCAGAGGGCGAAAAAAAGCCTGTCATGGTATGGATACACGGC 318
BSNT_05195___ 316 GGCGCTTTTTATCTCGGCGCAGGCAGTGAGCCATTGTATGACGGATCAAA 365
||.||.||||||.|.||.||.||.||.||.||..|.||.||||||||...
RBAM_031690__ 319 GGAGCATTTTATTTAGGTGCCGGAAGCGAACCGCTTTACGACGGATCTGC 368
BSNT_05195___ 366 ACTTGCGGCGCAGGGAGAGGTCATTGTCGTTACACTGAACTATCGGCTGG 415
.|||||.||..|.|||||.||||||||.||.|||||.||.||..||||.|
RBAM_031690__ 369 CCTTGCCGCTGACGGAGATGTCATTGTAGTGACACTCAATTACAGGCTCG 418
BSNT_05195___ 416 GGCCGTTTGGCTTTTTGCACTTGTCTTCATTTGATGAGGCGTATTCCGAT 465
|.||.||.||||||||.||.||.|||||..||.||||..|||||||||..
RBAM_031690__ 419 GACCATTCGGCTTTTTACATTTATCTTCTATTCATGACACGTATTCCGCC 468
BSNT_05195___ 466 AACCTTGGGCTTTTAGACCAAGCCGCCGCACTGAAATGGGTGCGGGAGAA 515
||..|.|||||..|.||.||....|||||.|||...||||||..|||.||
RBAM_031690__ 469 AATATCGGGCTGCTCGATCAGATTGCCGCGCTGCGCTGGGTGAAGGACAA 518
BSNT_05195___ 516 TATCTCAGCGTTTGGCGGTGATCCCGATAACGTAACAGTATTTGGAGAAT 565
||||||.|..||.||.||.||.||.||||||||.||..|||||||.||||
RBAM_031690__ 519 TATCTCCGAATTCGGAGGAGACCCGGATAACGTCACGATATTTGGTGAAT 568
BSNT_05195___ 566 CCGCCGGCGGCATGAGCATTGCCGCGCTGCTTGCTATGCCTGCGGCAAAA 615
|.||.||||||||||||||.|||||.||..|.||.|||||||..||||||
RBAM_031690__ 569 CGGCAGGCGGCATGAGCATCGCCGCCCTTATGGCAATGCCTGACGCAAAA 618
BSNT_05195___ 616 GGCCTGTTCCAGAAAGCGATCATGGAAAGCGGCGCTTC------------ 653
||||||||.||.|||||.||..|.|||||||||||.||
RBAM_031690__ 619 GGCCTGTTTCATAAAGCCATTTTAGAAAGCGGCGCCTCTCATACGATCCC 668
BSNT_05195___ 654 -CCGAACAATGACAAAAGAACAAGCGGCAAGCACTGCGGCTGCCTTTTTA 702
.||.|| |||.||||||| ||..|||||.||.|||
RBAM_031690__ 669 GGCGGAC-ATGGCAAAAGA------------CATCGCGGCGGCATTT--- 702
BSNT_05195___ 703 CAAGTCCTTGGAATTAATGAGAGCCAG--CTGGATCAATTGCATACGGTT 750
|||.|||| ||||.| || |||||||||||...|.||
RBAM_031690__ 703 ------------ATTCATGA-AGCCGGCACT-GATCAATTGCAGGAGCTT 738
BSNT_05195___ 751 TCTGCGGAAGATTTGCTAAAAGCGGCTGATCAGCTTCGGATTGCAGAAAA 800
||.|...|.||.|||||.||..|.||.|||.|..|.|||....||..|.|
RBAM_031690__ 739 TCCGTTAATGACTTGCTTAAGACTGCGGATAAAGTGCGGCGCTCACTAGA 788
BSNT_05195___ 801 AGAAAATATCTTTCAGCTGTTCTTCCAGCCCGCCCTTGATCCGAAAACGC 850
..||||.||.||||||||.||.||.|||||||||.|.||||||...||..
RBAM_031690__ 789 TCAAAACATTTTTCAGCTTTTGTTTCAGCCCGCCATCGATCCGGCCACAT 838
BSNT_05195___ 851 TGCCTGAAGAACCAGAAAAAGCGATCGCAGAAGGGGCTGCTTCCGGCATT 900
||||||.||||||.|..|||||.||.|||||.|||||.||....|||||.
RBAM_031690__ 839 TGCCTGCAGAACCGGTGAAAGCCATAGCAGACGGGGCCGCAGAAGGCATA 888
BSNT_05195___ 901 CCTCTATTGATTGGAACAACCCGTGATGAAGGATATTTATTTTTCACCCC 950
|||.|..|.||.|||||.|..||||||||||.||||||.|||||||||||
RBAM_031690__ 889 CCTATGATCATCGGAACCAATCGTGATGAAGCATATTTGTTTTTCACCCC 938
BSNT_05195___ 951 GGATTCAGACGTTCATTCTCAGGAAACGC----------TTGATGCAGCG 990
.|||.|||||.|||||||..||.|||.|| || ||||
RBAM_031690__ 939 TGATACAGACATTCATTCCGAGAAAAAGCAGCAAGATTATT--TGCA--- 983
BSNT_05195___ 991 CTCGAGTCTTTAC----TAGGGAAGCCGCTGGCA--GAGAAAGTTGCCGA 1034
|..|||| .||.||| || ||| |||.|||..||.||
RBAM_031690__ 984 ------TTATTACCTCGGAGAGAA----CT-GCACCGAGCAAGCAGCAGA 1022
BSNT_05195___ 1035 TTTGTATCCGCGTTCTCTGGAAA--GCCAAATTCATATGATGACTGAT-T 1081
|||.|||||||.|||..| ||| |.|||||..||||||||||.||| |
RBAM_031690__ 1023 TTTATATCCGCATTCATT--AAAGGGACAAATCGATATGATGACGGATCT 1070
BSNT_05195___ 1082 TATTATTTTGGCGCCCTGCCGTCGCCTATGCATCCGCACAGTCTCATTAC 1131
.||| ||.|||||.||.||.|||||.|..|||...|.||||||.||..||
RBAM_031690__ 1071 GATT-TTCTGGCGGCCGGCTGTCGCTTTCGCACAAGGACAGTCGCAGCAC 1119
BSNT_05195___ 1132 GCCCCTGTCTGGATGTACAGGTTCGATTGGCA-CCCGAAGAAGCCGCCGT 1180
||.||.||||||||||||.|.||.|||||||| ..|||| |..|||||||
RBAM_031690__ 1120 GCACCGGTCTGGATGTACCGCTTTGATTGGCATGGCGAA-ACACCGCCGT 1168
BSNT_05195___ 1181 ACAATAAAGCGTTTCACGCATTAGAGCTTCCTTTTGTCTTTGGAAATCTG 1230
...|||||||..|||||||..|.||..|.||.|||||.||.|||||..|.
RBAM_031690__ 1169 TTCATAAAGCCGTTCACGCTCTGGAATTGCCGTTTGTGTTCGGAAACTTT 1218
BSNT_05195___ 1231 GA--CGGATTGGAACGAATG-----GCAAAA-----GCGGAGATTACGGA 1268
|| | ||.|| |||.| ||||.| .|||.|||.|||.|
RBAM_031690__ 1219 GATTC---TTTGA--GAAAGACGCTGCAAGAACCGCTCGGTGATGACGCA 1263
BSNT_05195___ 1269 TGAGGTGAAACAGCTTTCTCACAC-GATACAATCAGCGTGGATCACGTTC 1317
.|||||||||| ||.|| .||.|||||.||.|||.||.|.||.
RBAM_031690__ 1264 -------GAACAGCTTTC-CAAACAAATCCAATCCGCATGGCTCGCTTTT 1305
BSNT_05195___ 1318 GCCAAAACAGGAAACCCAAGCACCGAAGCT---GTGAATTGGCCGACGTA 1364
||.|||||.||||||||.|.|||| .|| .|.||||||||
RBAM_031690__ 1306 GCAAAAACCGGAAACCCGAACACC---TCTCACTTCAATTGGCC------ 1346
BSNT_05195___ 1365 TCATGAAGA----AACGA-----GAGAGACGCTGATTTTAGATTCAGAGA 1405
||||.| |.||| |.||.||..||.||||..| ||..||
RBAM_031690__ 1347 ---TGAATATGATACCGATTCACGCGAAACTTTGCTTTTCAA--CACGGA 1391
BSNT_05195___ 1406 TTACG--ATCGAAAAAGATCCCGAATCTGAAAAAAG--GCAGAAACTATT 1451
|..|| .||||||..||||||||.||.|.||||.| ||| |
RBAM_031690__ 1392 TACCGCTGTCGAAAGTGATCCCGATTCAGCAAAACGCCGCA--------T 1433
BSNT_05195___ 1452 CC--CTCCAAAAGGTGAATAA 1470
|| .|.||| |.||||
RBAM_031690__ 1434 CCTGTTTCAA-----GCATAA 1449
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.