Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05183 and RBAM_031600

See Amino acid alignment / Visit BSNT_05183 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:40
# Commandline: needle
#    -asequence dna-align/BSNT_05183___yveR.1.9828.seq
#    -bsequence dna-align/RBAM_031600___epsH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05183___yveR-RBAM_031600___epsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05183___yveR-RBAM_031600___epsH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05183___yveR
# 2: RBAM_031600___epsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1112
# Identity:     752/1112 (67.6%)
# Similarity:   752/1112 (67.6%)
# Gaps:         151/1112 (13.6%)
# Score: 2506.5
# 
#
#=======================================

BSNT_05183___      1 ATGGAAACATCTGCGGTTAGTCTGTTAGTCGCTGTTTATAACACAGAAAC     50
                     |||||||||.|.|||||.|||.|.|||.|.|||||.|||||.||.|||||
RBAM_031600__      1 ATGGAAACACCCGCGGTCAGTTTATTAATTGCTGTGTATAATACGGAAAC     50

BSNT_05183___     51 ATATATCAGAACG-TGTCTCGAATCCCTGCGGAACCAGACAGTGGACAAT     99
                     .||| |.||||.| ||..|.||.||..|||..||.|||.|..|.|.||||
RBAM_031600__     51 TTAT-TTAGAAAGATGCTTAGATTCATTGCTCAATCAGTCGCTCGCCAAT     99

BSNT_05183___    100 ATTGAAATCATCATCGTCAATGACGGTTC------TCAAGACGCCAGCCC    143
                     ||.||||||.|...|||.||||||||.||      ||||      |||||
RBAM_031600__    100 ATCGAAATCGTGGCCGTTAATGACGGGTCAACGGATCAA------AGCCC    143

BSNT_05183___    144 GG-------------ATATCGCAGAAGAATACGCCAAAATGGACAACAGG    180
                     ||             .|||  ||||||    ||       |||..|.||.
RBAM_031600__    144 GGCGGTTCTTGAAGCCTAT--CAGAAG----CG-------GGATGAGAGA    180

BSNT_05183___    181 TTCAAGGTGATTCATCAGGAGAACCAGGGTCTCGGTGCGGTTCGGAATAA    230
                     .||..|||.|||||||||.|.||||..||.|||||.|||||.||.||.||
RBAM_031600__    181 ATCCGGGTCATTCATCAGCAAAACCGTGGGCTCGGCGCGGTCCGCAACAA    230

BSNT_05183___    231 AGGCATTGAGGCAGCACGCGGCGAATTTATCGCGTTTATCGATTCAGACG    280
                     .||.||.|||||.||.|||||||||||||||||.|||||.|||.|.||||
RBAM_031600__    231 GGGGATCGAGGCGGCGCGCGGCGAATTTATCGCTTTTATTGATGCGGACG    280

BSNT_05183___    281 ATTGGATCGAACCTGATTATTGCGAGCAGATGCTCCGGGCA---------    321
                     |.|||.|.|||||||||||||||           |.|.|||         
RBAM_031600__    281 ACTGGGTTGAACCTGATTATTGC-----------CTGCGCATGTATGAAA    319

BSNT_05183___    322 ----GCAGGC-GATGAAACTGATCTGGTCATTTGCAATTATGCCGCAGAG    366
                         |.|||| |||.|..|||||||.||.||||||.|.|||||.||.|||
RBAM_031600__    320 AAGCGAAGGCTGATCAGGCTGATCTCGTGATTTGCGAATATGCGGCCGAG    369

BSNT_05183___    367 TTTGAGGACACTGGCAAAACCATGGACTCTGACATTGCC----CAAACCT    412
                     ||||.|||.||.||.||||||               |||    |||  |.
RBAM_031600__    370 TTTGCGGATACGGGGAAAACC---------------GCCGTTTCAA--CG    402

BSNT_05183___    413 ATCAGGATCAG--------------CCGAAGGAGCACTATA--TCAAGGC    446
                     ||| |..||||              |||||  |..|||.||  |.||.|.
RBAM_031600__    403 ATC-GCTTCAGCGTACGCGGGCCGTCCGAA--ACAACTGTACCTGAAAGA    449

BSNT_05183___    447 GTTATTCGAAGGGAAG-GTCAGAGGGTTTTCATGGAACAAACTGTACAGA    495
                     .|||||.||| ||||| |||||.||.||||||||||||||.|||||||.|
RBAM_031600__    450 TTTATTTGAA-GGAAGAGTCAGCGGTTTTTCATGGAACAAGCTGTACAAA    498

BSNT_05183___    496 AGAAGCATGATTGAAGC-CCATCGGCTGTCG-TTTCCGCTCCGAGGCGAG    543
                     ||||.||||||.| ||| .||||.|||| || ||||||||.||.|..|||
RBAM_031600__    499 AGAACCATGATCG-AGCATCATCAGCTG-CGCTTTCCGCTTCGTGATGAG    546

BSNT_05183___    544 CTGGAGCATGTCGAGGATCAGTTTTTCAGCTTCAGGGCTCACTTTTTCGC    593
                     |||||.||.||.||||||||||..||||||.||.||||.||..|||.|||
RBAM_031600__    547 CTGGAACACGTGGAGGATCAGTACTTCAGCCTCCGGGCGCATGTTTACGC    596

BSNT_05183___    594 CCGCTCAGTATCCTACGTAAAAACGCCGCTCTATCATTATCGAATTCACC    643
                     ..|..|.||.||.|||||..|...||||||||||||||||||.||||||.
RBAM_031600__    597 AGGTGCGGTCTCGTACGTGGATCAGCCGCTCTATCATTATCGGATTCACT    646

BSNT_05183___    644 TTTCCTCCATTGTGCAGCGCTATCAGAAAAAATTGTTTGAATCAGGACTT    693
                     |..|.|||||||||||..|||||||||||||..|||||||.|||||.||.
RBAM_031600__    647 TGACTTCCATTGTGCAAAGCTATCAGAAAAAGCTGTTTGACTCAGGTCTC    696

BSNT_05183___    694 GCGCTGTATGAGGC-GAATGCGGCGTTTTTACAGGAGAACAACAAACTGG    742
                     |..||.||| .||| |||.|.|.|.|||||.|..||.|||        ||
RBAM_031600__    697 GTTCTCTAT-CGGCTGAACGAGACTTTTTTGCGTGAAAAC--------GG    737

BSNT_05183___    743 --------AGGAGTATCGCAAGGAGCTTGATACCTTTATCGTTCTTCAC-    783
                             ||||.||.||..|||||||.|||...||.|||||||..||| 
RBAM_031600__    738 CTGCTTACAGGAATACCGGCAGGAGCTGGATTTTTTCATCGTTCAGCACG    787

BSNT_05183___    784 -AGCAGCATCTGCATGCTGAATGAATGGAAAACGAGCGGCA-----GCCG    827
                      |.|||  |||||.|||||||||||||||     |||||.|     ||.|
RBAM_031600__    788 GAACAG--TCTGCCTGCTGAATGAATGGA-----AGCGGAATAATGGCGG    830

BSNT_05183___    828 CCGGCTGTTTGAAAAGCTTAGA--AATGTTGGCGTGATATGCGCGGACCC    875
                     ||||.|.|.|||.|||  |.||  |||.|..||..|||||||||.||.||
RBAM_031600__    831 CCGGTTTTCTGAGAAG--TGGAAGAATATCAGCCGGATATGCGCTGATCC    878

BSNT_05183___    876 GGTGTTTCAAGAAAGTCTTTCAAAAACGGGTACCGCTCCTTTTGACACAA    925
                     .|||||||.....||.|||||.|||||.||.||.||.||.||||||.|.|
RBAM_031600__    879 CGTGTTTCGCCTGAGCCTTTCCAAAACCGGAACGGCGCCGTTTGACGCCA    928

BSNT_05183___    926 AACGGTCATGCCTGCTTCTGATGGCGAAATACAGAA--TGATTCCGTTCG    973
                     ||||.||||||||.||.||..|||||||  .|.|||  ||||||||||||
RBAM_031600__    929 AACGCTCATGCCTTCTGCTTTTGGCGAA--GCTGAAGCTGATTCCGTTCG    976

BSNT_05183___    974 TCGCGATGGCATCGGCTGTGTATCAGCGGGTGATCGAGTACAAAATGAGA   1023
                     |..||.|||||||.||.|.|||||||||||..||||||||||||||||.|
RBAM_031600__    977 TGTCGCTGGCATCAGCCGCGTATCAGCGGGCAATCGAGTACAAAATGAAA   1026

BSNT_05183___   1024 AACAGAGGGTGA   1035
                     |.||||||||||
RBAM_031600__   1027 ATCAGAGGGTGA   1038


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