Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05183 and RBAM_031600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05183___yveR.1.9828.seq
# -bsequence dna-align/RBAM_031600___epsH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05183___yveR-RBAM_031600___epsH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05183___yveR-RBAM_031600___epsH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05183___yveR
# 2: RBAM_031600___epsH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1112
# Identity: 752/1112 (67.6%)
# Similarity: 752/1112 (67.6%)
# Gaps: 151/1112 (13.6%)
# Score: 2506.5
#
#
#=======================================
BSNT_05183___ 1 ATGGAAACATCTGCGGTTAGTCTGTTAGTCGCTGTTTATAACACAGAAAC 50
|||||||||.|.|||||.|||.|.|||.|.|||||.|||||.||.|||||
RBAM_031600__ 1 ATGGAAACACCCGCGGTCAGTTTATTAATTGCTGTGTATAATACGGAAAC 50
BSNT_05183___ 51 ATATATCAGAACG-TGTCTCGAATCCCTGCGGAACCAGACAGTGGACAAT 99
.||| |.||||.| ||..|.||.||..|||..||.|||.|..|.|.||||
RBAM_031600__ 51 TTAT-TTAGAAAGATGCTTAGATTCATTGCTCAATCAGTCGCTCGCCAAT 99
BSNT_05183___ 100 ATTGAAATCATCATCGTCAATGACGGTTC------TCAAGACGCCAGCCC 143
||.||||||.|...|||.||||||||.|| |||| |||||
RBAM_031600__ 100 ATCGAAATCGTGGCCGTTAATGACGGGTCAACGGATCAA------AGCCC 143
BSNT_05183___ 144 GG-------------ATATCGCAGAAGAATACGCCAAAATGGACAACAGG 180
|| .||| |||||| || |||..|.||.
RBAM_031600__ 144 GGCGGTTCTTGAAGCCTAT--CAGAAG----CG-------GGATGAGAGA 180
BSNT_05183___ 181 TTCAAGGTGATTCATCAGGAGAACCAGGGTCTCGGTGCGGTTCGGAATAA 230
.||..|||.|||||||||.|.||||..||.|||||.|||||.||.||.||
RBAM_031600__ 181 ATCCGGGTCATTCATCAGCAAAACCGTGGGCTCGGCGCGGTCCGCAACAA 230
BSNT_05183___ 231 AGGCATTGAGGCAGCACGCGGCGAATTTATCGCGTTTATCGATTCAGACG 280
.||.||.|||||.||.|||||||||||||||||.|||||.|||.|.||||
RBAM_031600__ 231 GGGGATCGAGGCGGCGCGCGGCGAATTTATCGCTTTTATTGATGCGGACG 280
BSNT_05183___ 281 ATTGGATCGAACCTGATTATTGCGAGCAGATGCTCCGGGCA--------- 321
|.|||.|.||||||||||||||| |.|.|||
RBAM_031600__ 281 ACTGGGTTGAACCTGATTATTGC-----------CTGCGCATGTATGAAA 319
BSNT_05183___ 322 ----GCAGGC-GATGAAACTGATCTGGTCATTTGCAATTATGCCGCAGAG 366
|.|||| |||.|..|||||||.||.||||||.|.|||||.||.|||
RBAM_031600__ 320 AAGCGAAGGCTGATCAGGCTGATCTCGTGATTTGCGAATATGCGGCCGAG 369
BSNT_05183___ 367 TTTGAGGACACTGGCAAAACCATGGACTCTGACATTGCC----CAAACCT 412
||||.|||.||.||.|||||| ||| ||| |.
RBAM_031600__ 370 TTTGCGGATACGGGGAAAACC---------------GCCGTTTCAA--CG 402
BSNT_05183___ 413 ATCAGGATCAG--------------CCGAAGGAGCACTATA--TCAAGGC 446
||| |..|||| ||||| |..|||.|| |.||.|.
RBAM_031600__ 403 ATC-GCTTCAGCGTACGCGGGCCGTCCGAA--ACAACTGTACCTGAAAGA 449
BSNT_05183___ 447 GTTATTCGAAGGGAAG-GTCAGAGGGTTTTCATGGAACAAACTGTACAGA 495
.|||||.||| ||||| |||||.||.||||||||||||||.|||||||.|
RBAM_031600__ 450 TTTATTTGAA-GGAAGAGTCAGCGGTTTTTCATGGAACAAGCTGTACAAA 498
BSNT_05183___ 496 AGAAGCATGATTGAAGC-CCATCGGCTGTCG-TTTCCGCTCCGAGGCGAG 543
||||.||||||.| ||| .||||.|||| || ||||||||.||.|..|||
RBAM_031600__ 499 AGAACCATGATCG-AGCATCATCAGCTG-CGCTTTCCGCTTCGTGATGAG 546
BSNT_05183___ 544 CTGGAGCATGTCGAGGATCAGTTTTTCAGCTTCAGGGCTCACTTTTTCGC 593
|||||.||.||.||||||||||..||||||.||.||||.||..|||.|||
RBAM_031600__ 547 CTGGAACACGTGGAGGATCAGTACTTCAGCCTCCGGGCGCATGTTTACGC 596
BSNT_05183___ 594 CCGCTCAGTATCCTACGTAAAAACGCCGCTCTATCATTATCGAATTCACC 643
..|..|.||.||.|||||..|...||||||||||||||||||.||||||.
RBAM_031600__ 597 AGGTGCGGTCTCGTACGTGGATCAGCCGCTCTATCATTATCGGATTCACT 646
BSNT_05183___ 644 TTTCCTCCATTGTGCAGCGCTATCAGAAAAAATTGTTTGAATCAGGACTT 693
|..|.|||||||||||..|||||||||||||..|||||||.|||||.||.
RBAM_031600__ 647 TGACTTCCATTGTGCAAAGCTATCAGAAAAAGCTGTTTGACTCAGGTCTC 696
BSNT_05183___ 694 GCGCTGTATGAGGC-GAATGCGGCGTTTTTACAGGAGAACAACAAACTGG 742
|..||.||| .||| |||.|.|.|.|||||.|..||.||| ||
RBAM_031600__ 697 GTTCTCTAT-CGGCTGAACGAGACTTTTTTGCGTGAAAAC--------GG 737
BSNT_05183___ 743 --------AGGAGTATCGCAAGGAGCTTGATACCTTTATCGTTCTTCAC- 783
||||.||.||..|||||||.|||...||.|||||||..|||
RBAM_031600__ 738 CTGCTTACAGGAATACCGGCAGGAGCTGGATTTTTTCATCGTTCAGCACG 787
BSNT_05183___ 784 -AGCAGCATCTGCATGCTGAATGAATGGAAAACGAGCGGCA-----GCCG 827
|.||| |||||.||||||||||||||| |||||.| ||.|
RBAM_031600__ 788 GAACAG--TCTGCCTGCTGAATGAATGGA-----AGCGGAATAATGGCGG 830
BSNT_05183___ 828 CCGGCTGTTTGAAAAGCTTAGA--AATGTTGGCGTGATATGCGCGGACCC 875
||||.|.|.|||.||| |.|| |||.|..||..|||||||||.||.||
RBAM_031600__ 831 CCGGTTTTCTGAGAAG--TGGAAGAATATCAGCCGGATATGCGCTGATCC 878
BSNT_05183___ 876 GGTGTTTCAAGAAAGTCTTTCAAAAACGGGTACCGCTCCTTTTGACACAA 925
.|||||||.....||.|||||.|||||.||.||.||.||.||||||.|.|
RBAM_031600__ 879 CGTGTTTCGCCTGAGCCTTTCCAAAACCGGAACGGCGCCGTTTGACGCCA 928
BSNT_05183___ 926 AACGGTCATGCCTGCTTCTGATGGCGAAATACAGAA--TGATTCCGTTCG 973
||||.||||||||.||.||..||||||| .|.||| ||||||||||||
RBAM_031600__ 929 AACGCTCATGCCTTCTGCTTTTGGCGAA--GCTGAAGCTGATTCCGTTCG 976
BSNT_05183___ 974 TCGCGATGGCATCGGCTGTGTATCAGCGGGTGATCGAGTACAAAATGAGA 1023
|..||.|||||||.||.|.|||||||||||..||||||||||||||||.|
RBAM_031600__ 977 TGTCGCTGGCATCAGCCGCGTATCAGCGGGCAATCGAGTACAAAATGAAA 1026
BSNT_05183___ 1024 AACAGAGGGTGA 1035
|.||||||||||
RBAM_031600__ 1027 ATCAGAGGGTGA 1038
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