Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05181 and RBAM_031580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:40
# Commandline: needle
# -asequence dna-align/BSNT_05181___yveT.1.9828.seq
# -bsequence dna-align/RBAM_031580___epsJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05181___yveT-RBAM_031580___epsJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05181___yveT-RBAM_031580___epsJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05181___yveT
# 2: RBAM_031580___epsJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1104
# Identity: 721/1104 (65.3%)
# Similarity: 721/1104 (65.3%)
# Gaps: 144/1104 (13.0%)
# Score: 2130.5
#
#
#=======================================
BSNT_05181___ 1 ATGACC---CCGCTCGTCAGCATTATTGTCCCGATGTAT----CATGTTG 43
|||||| |||||.||.|||.|.||.||.||||||||| || |
RBAM_031580__ 1 ATGACCGCGCCGCTTGTGAGCGTGATCGTGCCGATGTATAAGACA----G 46
BSNT_05181___ 44 AACCATTTATAGGGGAGTGCATTGATTCTTTGCTTCGTCAA-----ACGC 88
|.||.|||||....||.|||...|.|||||| ..||| ||||
RBAM_031580__ 47 AGCCTTTTATGAAAGAATGCGCGGTTTCTTT-----AACAAAACAGACGC 91
BSNT_05181___ 89 TTTCTGATATTGAAATCATCCTCGTGAATGACGGAACACCGGATCGTTCA 138
|....||.||.||||||||..||||.||||||||..|||||||||..|||
RBAM_031580__ 92 TGAGAGACATCGAAATCATTTTCGTCAATGACGGTTCACCGGATCAGTCA 141
BSNT_05181___ 139 -GGCGAAATTGCAGAGGATTAT-----GCAAAACGGGATGCGAGAATCCG 182
|||| .|||||.|| |..|| |||.|| ||||||||||||||
RBAM_031580__ 142 GGGCG-GATTGCTGA--ACAATTCGCCGCAGAA---GATGCGAGAATCCG 185
BSNT_05181___ 183 GGTCATTCATCAGGCAAACGGCGGGCTTAGTTCAGCGCGAAATACGGGAA 232
|||.||||||.|.|.|||||||||.||.||.||.||.||.|||.|.||||
RBAM_031580__ 186 GGTGATTCATAAAGAAAACGGCGGCCTCAGCTCGGCCCGCAATGCCGGAA 235
BSNT_05181___ 233 TAAAGGCCGCGCGGGGCACTTACATCGGCTTTGTAGACGGAGACGATTAT 282
||||.|||||.||.|||..|||.|||||.||||..|||||.||.||.|||
RBAM_031580__ 236 TAAAAGCCGCCCGCGGCCGTTATATCGGTTTTGCGGACGGCGATGACTAT 285
BSNT_05181___ 283 GTATC--ATCCGCCATGTTCCAGAGACTGGCTGAAGAAGCGGAGGAAAAT 330
||..| |..|| ||||||.||.|.||...|||||||||||||.|.||.
RBAM_031580__ 286 GTGACGGAAACG--ATGTTCGAGCGGCTTTATGAAGAAGCGGAGAAGAAC 333
BSNT_05181___ 331 CGGCTCGACATCGTCGGATGCGGTTTTTA----CAAACAGTCATCGGACA 376
|||||.||.||||.|||||||||.|.||| .|||| |.|.||..|.|
RBAM_031580__ 334 CGGCTGGATATCGCCGGATGCGGCTATTATAAGGAAAC-GCCGTCTAAGA 382
BSNT_05181___ 377 GGCGGACATATGTGCCGCCGCAGCTTGAGGCAAACCGCGTGCTGACGAAA 426
..||.||||||.||||||||...|||..|.|...||||||..|.|| |.
RBAM_031580__ 383 AACGAACATATATGCCGCCGTCCCTTCCGCCGGGCCGCGTCTTCAC--AG 430
BSNT_05181___ 427 C-CA-GAAATGACTGAACGGCTTAAACATGCTCACGAAACGAGATTTATC 474
| || ||||||||||.|..|||.|..|.|||.||||||....|.|||||.
RBAM_031580__ 431 CGCATGAAATGACTGCATTGCTGACCCGTGCGCACGAACATCGGTTTATT 480
BSNT_05181___ 475 TGGTATGTATGGCGTTATCTTTACCGCCGTG-AGCTTTTTGATAGGGCGA 523
||||||||.|||||.|||.|.|||||..|.| ||| .|||..||||
RBAM_031580__ 481 TGGTATGTGTGGCGCTATATATACCGGAGAGAAGC--ATTGCAAGGG--- 525
BSNT_05181___ 524 ATCTGATGTTTGATGAAGACATCCGTTTTGCCGAAGACTCTCCCTTCAAT 573
|||.||||..|||||||.|||||.|||||||||||||||||.||.|||
RBAM_031580__ 526 --CTGTTGTTCCATGAAGATATCCGGTTTGCCGAAGACTCTCCGTTTAAT 573
BSNT_05181___ 574 TTGTCCGCTTTTTGCGAAGCGGAGCGGGTGAAAATGCTTGATGAGGGATT 623
|||.|.||.||..||.||||.|..||..|.|||.||.|.||.||.||..|
RBAM_031580__ 574 TTGGCAGCGTTCCGCCAAGCCGCACGTATCAAAGTGATAGACGAAGGGCT 623
BSNT_05181___ 624 GTACATTTATCGTGAAAACCCGAACAGCCTGACAGAAATCCCTTATAAAC 673
|||.||.||.||.|||||.|||.|.||.||.|||||||.|||.|.|||.|
RBAM_031580__ 624 GTATATCTACCGGGAAAATCCGCAAAGTCTTACAGAAACCCCGTTTAAGC 673
BSNT_05181___ 674 CGGCGA--TGGATGAACATCTTCAAAAACAATATCAAGCTAAAATCGCAT 721
| |.| |.|||.||.|.||.|||||.||||||.||||.|||||.||.|
RBAM_031580__ 674 C--CCACTTAGATCAAGAACTGCAAAAGCAATATAAAGCGAAAATGGCTT 721
BSNT_05181___ 722 TCTA-----CAATCACTATGGCTTAGCAGGCGCATGCCAAGAA--GAT-T 763
|.|| |.|.| .||||.| |.|.|||.|||| |.| ||| |
RBAM_031580__ 722 TTTATGAGGCGAAC----GGGCTGA-CGGACGCCTGCC--GGAGCGATAT 764
BSNT_05181___ 764 TGAATGTGTACA----TTTGCAGGCACCAGCTTCCGATGCTTTTGGCAAA 809
.|| |||| |.||||.|||.|||.||||||||||..|.||.||
RBAM_031580__ 765 CGA-----TACATATTTGTGCAAGCATCAGATTCCGATGCTGATCGCCAA 809
BSNT_05181___ 810 TGCCTGTGCTTCTCCGAATTCGCCGAAAGACATCAAAAAGA--------- 850
.||.||.||..|.|||.|..||.| ||||| |||
RBAM_031580__ 810 CGCATGCGCCGCCCCGCAGCCGTC-----ACATC----AGATTACGGCGC 850
BSNT_05181___ 851 AGATCAGACAG-ATTTTATCCTATGACATGGT-------GCG----GCAG 888
|.||| |.||| ||.|||.|.||||||||||| ||| ||||
RBAM_031580__ 851 ACATC-GGCAGAATCTTAACGTATGACATGGTAAAAACGGCGGTGCGCAG 899
BSNT_05181___ 889 ---GCTGT-CAGACATACA---CCGTTTGAGAAATTATTAAGAGGAGAGC 931
||.|| |.|.||||.| |.|.|.|.| ||.||||
RBAM_031580__ 900 GACGCCGTGCCGCCATAAACAGCTGCTGGCG------------GGGGAGC 937
BSNT_05181___ 932 GCTTGGTATTAGCACTGTGTAAATGGCGGCTCACTTTTC-TCATCAAGCT 980
||.||||..|.|..|||||.|||..|||.||..||.||| ||..||.||
RBAM_031580__ 938 GCGTGGTGCTCGGTCTGTGCAAAATGCGCCTTCCTCTTCTTCTGCATGC- 986
BSNT_05181___ 981 GTTTTTCGAGC----ATCGGGGGATAATGAAAGGCAGTGC-GAAGCAAGC 1025
|||||||||.| ||| ||.|..|||||||||||| |||| .|||
RBAM_031580__ 987 GTTTTTCGAACGGAAATC----GAAAGAGAAAGGCAGTGCGGAAG-GAGC 1031
BSNT_05181___ 1026 ATGA 1029
||||
RBAM_031580__ 1032 ATGA 1035
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