Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05179 and RBAM_031570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05179.1.9828.seq
# -bsequence dna-align/RBAM_031570___epsK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05179-RBAM_031570___epsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05179-RBAM_031570___epsK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05179
# 2: RBAM_031570___epsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1551
# Identity: 1087/1551 (70.1%)
# Similarity: 1087/1551 (70.1%)
# Gaps: 135/1551 ( 8.7%)
# Score: 3772.5
#
#
#=======================================
BSNT_05179 0 -------------------------------------------------- 0
RBAM_031570__ 1 ATGAAATTTGCCATTAATTTCGGCGCCAATGTGACGGCGTTTTTACTATC 50
BSNT_05179 1 -------------------ATGACGCCTTTTATTGTCAAAACGCTCGGTG 31
||||||||.||||||||.|||||..|.||||
RBAM_031570__ 51 GGTGTTTTTATCAGTGTGGATGACGCCCTTTATTGTGAAAACATTAGGTG 100
BSNT_05179 32 TGGAAGCGTTTGGCTTTGTTCACTTGACACAAAATGTGATTAATTACTTT 81
||||.||.|||||.|||||.||..|||||||.|||.|.|||||.||.||.
RBAM_031570__ 101 TGGAGGCTTTTGGGTTTGTCCATCTGACACAGAATATCATTAACTATTTC 150
BSNT_05179 82 TCGGTTATTACCGTGGCGCTCAGCTCGGTTGTCGTTCGGTTCTTTTCTGT 131
||..||||||||||.|||||.|||||.||.||.||..||||.||.||.||
RBAM_031570__ 151 TCTATTATTACCGTTGCGCTGAGCTCTGTCGTTGTGAGGTTTTTCTCCGT 200
BSNT_05179 132 TGCTGCCCACAGGGGAGAGC-GGGAGAAAGCAAATGCGTATATCAGCAAT 180
.||.||||||||||| ||.| ||||..|.||.|||||||||.|.||||||
RBAM_031570__ 201 CGCCGCCCACAGGGG-GAACAGGGATGAGGCCAATGCGTATGTAAGCAAT 249
BSNT_05179 181 TATTTAGCGGCCTCTGTTTTGATTTC---ATTGCT-GCTCTTGCTGCCGC 226
||||||||.||.|||||..||||.|| |||.|| ||| .||||||
RBAM_031570__ 250 TATTTAGCCGCGTCTGTCGTGATATCTCTATTACTCGCT----GTGCCGC 295
BSNT_05179 227 TTGCGGGTTCGGCTTTTTTTATTGACCGCGTCATGAATGTGCCGCAAGCG 276
|.||.||..|||||||||||||||||....|.||||||||||||...|.|
RBAM_031570__ 296 TCGCCGGGACGGCTTTTTTTATTGACAAGATTATGAATGTGCCGGCCGGG 345
BSNT_05179 277 CTTTTGGCAGATGTGCGTTTGTCGATTTTAATCGGCAGTTTGCTGTTTAT 326
||.||..|.||||||.|..|.||.|||.||||||||||..||||||||||
RBAM_031570__ 346 CTCTTAACGGATGTGAGGCTCTCTATTGTAATCGGCAGCGTGCTGTTTAT 395
BSNT_05179 327 TTTAACGTTTCTGATGGCGGGTTTCGGTGCTGCACCATTTTATGCCAACC 376
..|.||||||.|.|||||||||||||...|.|..||.||||.|||||||.
RBAM_031570__ 396 GCTGACGTTTTTTATGGCGGGTTTCGCGACGGGGCCGTTTTTTGCCAACA 445
BSNT_05179 377 GCCTTTATATCACCAGTTCCATTCAGGCGGTGCAAATGCTTATACGGGTG 426
..|||||||||||.||.|||||||||||.|||||||||||..|..|||||
RBAM_031570__ 446 AGCTTTATATCACAAGCTCCATTCAGGCCGTGCAAATGCTGGTCAGGGTG 495
BSNT_05179 427 CTGTCTGTGCT-GCTCCTGTTTGCATGCTTTGCGCCGAAAATCTGGCAGA 475
||||.|||||| ||| ||||||.|.|||.|..||||||||||||||||||
RBAM_031570__ 496 CTGTGTGTGCTCGCT-CTGTTTACGTGCCTGCCGCCGAAAATCTGGCAGA 544
BSNT_05179 476 TCCAGCTTGCAGCTTTAGCTGGTGCTGTTATTGCGTCTGTGCTGTCTTTC 525
||||||||.|.||.|||||.||.||.||...||||.|.||||||.||||.
RBAM_031570__ 545 TCCAGCTTTCGGCATTAGCGGGAGCCGTCTGTGCGGCCGTGCTGACTTTT 594
BSNT_05179 526 TATTTCTTCAAAAAGCTGATTCCGTGGTTTTCGTTT----CGTATGAAGG 571
|..||.||.||.||..|||||||||||||||| ||| |||| ||
RBAM_031570__ 595 TTCTTTTTTAAGAAATTGATTCCGTGGTTTTC-TTTCAGCCGTA--AA-- 639
BSNT_05179 572 ATCTT-TCATTCCGCACTAGCAAGGAGCTGTTTCAAGCGGGCGCATGGAG 620
|.||| |||||.|..||.|||||.|.|||||||..|||.||.||.|||||
RBAM_031570__ 640 ACCTTGTCATTACAGACGAGCAAAGTGCTGTTTTCAGCCGGTGCCTGGAG 689
BSNT_05179 621 CTCCGTCAATCAAATCGGCGTCCTGCTTTTTTTGCAGATTGATCTGTTAA 670
|||.|||||.||.||||||||.|||||.|||.||||||||||.||..|.|
RBAM_031570__ 690 CTCTGTCAACCAGATCGGCGTGCTGCTGTTTCTGCAGATTGACCTCATGA 739
BSNT_05179 671 CCGCCAATTTGATGCTTGGGGCGTCCGCATCCGGG-AAATACGCGGCGAT 719
|.|||||..|..||||.|||.||||.| |..|||| ...||.||||||||
RBAM_031570__ 740 CGGCCAACCTCGTGCTGGGGCCGTCTG-AGGCGGGTGTCTATGCGGCGAT 788
BSNT_05179 720 TATCCAGTTTCCGCTGCTTTTGCGCAG----CTTGGCCGGAACGGTCGCA 765
|||.||.||.|||||.| |||.||| ||| |||||.|||.|.||.
RBAM_031570__ 789 TATTCAATTCCCGCTCC---TGCTCAGAAGTCTT-GCCGGGACGCTTGCT 834
BSNT_05179 766 TCCCTGTTTGCGCCCATCATGACTTCATATTATTCAAAAGGCGATATGGA 815
||.|||||||||||..|..|||||||.|||||.||||||||.||||||||
RBAM_031570__ 835 TCACTGTTTGCGCCGGTTTTGACTTCCTATTACTCAAAAGGGGATATGGA 884
BSNT_05179 816 AGGATTGATGAATTACGCCAATAAGGCAGTAAGGCTCAATGGTCTTTTGC 865
|||..|..||..|||||||||||||||.||..||.|.||.||.|||.|||
RBAM_031570__ 885 AGGTCTCCTGTCTTACGCCAATAAGGCTGTGCGGATGAACGGGCTTCTGC 934
BSNT_05179 866 TTGCACTTCCTGCTGCCTTATTGGGCGGATTGGCGGGACCTTTTCTGACA 915
|.||.|||||.||.||.|||||.||.||..|.||.|.|||.||||||.|.
RBAM_031570__ 935 TCGCGCTTCCCGCCGCATTATTAGGAGGGCTTGCCGAACCGTTTCTGGCG 984
BSNT_05179 916 ATCTGGCTCGGACCGTCCTT--TTCA-ACGATAGCACCGCTTTTATTTAT 962
||.|||||.||.|||||.|| |.|| ||| ||.||||||||||.|||
RBAM_031570__ 985 ATTTGGCTGGGCCCGTCGTTTGTGCAGACG---GCGCCGCTTTTATATAT 1031
BSNT_05179 963 TCATGCCGGATACTTGGTTGTCAGCCTCGCCTTTATGCCGCTGTTTTATA 1012
|||.||||..||.||||..|||||.|||.|..|.||||||||.|||||..
RBAM_031570__ 1032 TCACGCCGCGTATTTGGCGGTCAGTCTCTCTGTCATGCCGCTTTTTTACG 1081
BSNT_05179 1013 TATGGACCGCTTTTAATCAACAAAAAACACCGGCGATTGTTACCCTGCTG 1062
|||||||.|||||||||.||||||||||.||.||..|.||||| .
RBAM_031570__ 1082 TATGGACGGCTTTTAATAAACAAAAAACGCCCGCCGTCGTTAC------T 1125
BSNT_05179 1063 TTAGGT----GCGG--TGAATGTGGTGCTGGCGGTCACGCTGAGCGGGCC 1106
|||.|| |||| |||||||..|..||||.||....||.|||||.||
RBAM_031570__ 1126 TTATGTTTAGGCGGACTGAATGTCATATTGGCCGTGGTTCTCAGCGGACC 1175
BSNT_05179 1107 GGCTCATCTCGGTCTGTACGGCATAACATTGGCAGGGGCCATTTCTCTTA 1156
|||.||||||||.|||||||||||.||..|.||.||.||..|.|||||.|
RBAM_031570__ 1176 GGCACATCTCGGGCTGTACGGCATCACCATCGCCGGTGCAGTCTCTCTCA 1225
BSNT_05179 1157 TTTTAAAAAATGCCATCTTTACGCCGCTTTACGTATCCCGCATTACAGGC 1206
||||.|||||||||.||||.||||||||.||.||.||.|..|||||.|||
RBAM_031570__ 1226 TTTTGAAAAATGCCGTCTTCACGCCGCTGTATGTTTCGCATATTACGGGC 1275
BSNT_05179 1207 -TACAAAAAGCACGTGTTCTTTAAAGGCATCATCGGGCTTCTTT--CAGC 1253
|.||.|||.| ||.|||.|..||||||||..||||.| |.|| |.||
RBAM_031570__ 1276 TTTCAGAAAAC-CGCGTTTTACAAAGGCATGTTCGGCC--CGTTGGCGGC 1322
BSNT_05179 1254 CGCTGTATTTGCCTGGGCGGTCTGTAAGGCAATTCAGTTCGTTGTGA-AG 1302
.||.||||||||||||||.|||||...||..||.|.|.| |||.|.| .|
RBAM_031570__ 1323 GGCCGTATTTGCCTGGGCTGTCTGCCGGGGTATCCGGCT-GTTTTCACCG 1371
BSNT_05179 1303 ATTGACAGCT-GGCCGTCATTGATAGCGACGGGAGTGACAGTCAGCTTTT 1351
.||||||||| |||||.| .||||.||..||||..|..|.||..||.|..
RBAM_031570__ 1372 CTTGACAGCTGGGCCGGC-CTGATCGCCGCGGGGCTTGCCGTATGCATGA 1420
BSNT_05179 1352 GCTACGCTGTTTTCGCTTTTATGCTCGTTTGTACAAAAGAGGAAAGACAG 1401
||||.||.|..|||||||||.|..||.|||||||.|||||.|||||.|.|
RBAM_031570__ 1421 GCTATGCCGCATTCGCTTTTTTCTTCATTTGTACGAAAGAAGAAAGGCGG 1470
BSNT_05179 1402 CTGGTATTA---AAACGGTTTCGAAAAACGAAAGGAGCTGTGAATCTTTG 1448
||.|..||| ||| |..||||||..||||||||||||..|..||||
RBAM_031570__ 1471 CTTGCTTTACAGAAA---TGCCGAAAAGTGAAAGGAGCTGTTCAGATTTG 1517
BSNT_05179 1449 A 1449
|
RBAM_031570__ 1518 A 1518
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