Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05173 and RBAM_031530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:39
# Commandline: needle
# -asequence dna-align/BSNT_05173___yvfF.1.9828.seq
# -bsequence dna-align/RBAM_031530___epsO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05173___yvfF-RBAM_031530___epsO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05173___yvfF-RBAM_031530___epsO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05173___yvfF
# 2: RBAM_031530___epsO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1054
# Identity: 694/1054 (65.8%)
# Similarity: 694/1054 (65.8%)
# Gaps: 173/1054 (16.4%)
# Score: 2331.5
#
#
#=======================================
BSNT_05173___ 1 ATGGACAGCAAGCATTCG--ATG--ATCAGCC---TGAAACAGAAACTGT 43
||||||||| || ||| ||.|||| |.|||.|||..|||.
RBAM_031530__ 1 ATGGACAGC-------CGCCATGTTATGAGCCGATTAAAAGAGACGCTGA 43
BSNT_05173___ 44 CCGGGCTGCTCGACGTCATACCGAAACAATCAGAGATTATATATGCTGAC 93
|.||.||||||..|||.||||||...|||||.||.||.||||||||.|||
RBAM_031530__ 44 CGGGTCTGCTCAGCGTTATACCGCCGCAATCTGACATCATATATGCCGAC 93
BSNT_05173___ 94 TATCCTCTATACGGAAATGTAGGGGATTTATTTATTATGAAAGGAACAGA 143
|||||.||.|||||||||||||||||||||||.|||||||||||.||.||
RBAM_031530__ 94 TATCCCCTCTACGGAAATGTAGGGGATTTATTGATTATGAAAGGGACGGA 143
BSNT_05173___ 144 AGCTTTCTTTAAAGAACACGGGATTCGGGTCAGAAAACGCTGGAATCCTG 193
.||.||.|||||||..|||||.||.||.||||||.|.|||||||||||.|
RBAM_031530__ 144 GGCGTTTTTTAAAGCGCACGGCATCCGCGTCAGACAGCGCTGGAATCCCG 193
BSNT_05173___ 194 ACAATTTTCCAGTCGGGCG------------AAAGCTGGATCCTCATCTC 231
|||||||||||.||||||| ||||..|
RBAM_031530__ 194 ACAATTTTCCATTCGGGCGCCGGGCGGACAAAAAGACG------------ 231
BSNT_05173___ 232 ATCATCGTCTGCCAGGGAGGCGGAAACTTCGGGGATCTGTATCCGTATTA 281
|||||||||||.|||||.||||||||.|||||||||||.||||||||.||
RBAM_031530__ 232 ATCATCGTCTGTCAGGGTGGCGGAAATTTCGGGGATCTCTATCCGTACTA 281
BSNT_05173___ 282 TCAAGGC-TTTAGAGAGAAAATCGTCCAAACCTATCCGAACCACAAAATT 330
|| ||.| ||.||.||.|||||||||.||.|||.||||.|..|||..||.
RBAM_031530__ 282 TC-AGACGTTCAGGGAAAAAATCGTCAAATCCTTTCCGGAAAACAGGATC 330
BSNT_05173___ 331 GTGATCCTGCCGCAATCGATTTATTTTCA-----AAACA---------AA 366
||.||||||||||||||.||.||||.||| |.||| ||
RBAM_031530__ 331 GTCATCCTGCCGCAATCCATCTATTATCAGGATGAGACACGGCTTGAGAA 380
BSNT_05173___ 367 GACAACCTCAAACGGACGGCAGAGATATTTTCTAAGCATGCGAACCTTCA 416
|||| .|||| |.|.|||.|..||||...|.|.||.||
RBAM_031530__ 381 GACA-----------TCGGC---GCTTTTTGCGGAGCACAAGGATCTCCA 416
BSNT_05173___ 417 CATCATGACAAGGGAAAAAGCCTCCTATGCTACGGCACAGGCCTATTTTA 466
|.|..|.||.||.||..|.|..||.||.|..||.|||.|...||..|||.
RBAM_031530__ 417 CCTGTTTACGAGAGATCATGTGTCATACGAAACTGCAAAACACTTCTTTT 466
BSNT_05173___ 467 CAACAAATCACATTCAGCTTCTGCCTGATATGGCTCATCAGCTGTTTCC- 515
|..|.|||||.||...||||.|||||||.|||||.||||||||||.|||
RBAM_031530__ 467 CGGCGAATCATATCGGGCTTATGCCTGACATGGCCCATCAGCTGTATCCG 516
BSNT_05173___ 516 -------CGTCA----TTCC--CACGCAGCAGCCGTCCAATCAAAAGCTG 552
||||| .||| |||||.||||.|.|| ||
RBAM_031530__ 517 ATGGCGGCGTCAGCGGCTCCGTCACGCGGCAGGCTTC--AT--------- 555
BSNT_05173___ 553 AGATTTATCCGAACAGATCATGAAGCAAACCAGGCGCTTCAGGAA--CAC 600
||||||||.||.||| || |||| ||.
RBAM_031530__ 556 ---TTTATCCGCACGGAT--------------GG-------GGAAATCAA 581
BSNT_05173___ 601 GCAGAAGCGG-------------------AAAGCTACGACTGGCGCACG- 630
.|.|||||.| ||||||.|||||| |||.|
RBAM_031530__ 582 TCCGAAGCTGCAAAACAATTCTTCCGTTAAAAGCTGCGACTG--GCAGGA 629
BSNT_05173___ 631 -GTGCTGTCAGCTTCAGACCGCCGGACGATTGCTTTTCTCCAAACGCTGA 679
|||||||||||....||||||.||...||.||||||.||||||||||||
RBAM_031530__ 630 TGTGCTGTCAGCAAGCGACCGCAGGGGAATCGCTTTTTTCCAAACGCTGA 679
BSNT_05173___ 680 ACGTCTTGAATAAAAAAGCAGGCAACCCTTTGCCCATTGCGTATATATGG 729
|.||.||||||||||||||.||.|||||..||||.||||||....|.|||
RBAM_031530__ 680 ATGTTTTGAATAAAAAAGCGGGAAACCCGCTGCCGATTGCGCGGTTTTGG 729
BSNT_05173___ 730 GAAAAATACTCGGATTATATCGT--CCAA-AAAGCGATTCGGTTTTTCAG 776
.||...||.||.|||| ||.| |.|| |||.|..|.|.|||||||||
RBAM_031530__ 730 AAACGCTATTCCGATT---TCTTAACGAAGAAATCAGTCCTGTTTTTCAG 776
BSNT_05173___ 777 CCGTTACGAATCGGTGGAAACGTCAAGGCTGCACGGACACATCTTGTCTT 826
|.|.||||||||||||||||||||||||||.|||||.|||||..||||.|
RBAM_031530__ 777 CAGGTACGAATCGGTGGAAACGTCAAGGCTTCACGGCCACATTCTGTCCT 826
BSNT_05173___ 827 CTCTTCTTCAAAAAGAAAACACGGTCATTGATAATTCCTACGGGAAAAAC 876
|.|||||....|||...||.||.||||||||||||||.||||||||||||
RBAM_031530__ 827 CGCTTCTCGGGAAACCGAATACCGTCATTGATAATTCATACGGGAAAAAC 876
BSNT_05173___ 877 GCCAATTACTTTCATACCTGGATGGAAGGCGTGCCAAGCAC-------CC 919
|||||.||.|.|.|.|||||||||.| |.||||.| ||
RBAM_031530__ 877 GCCAACTATTATTACACCTGGATGCA-------CGAAGCGCCGGATGTCC 919
BSNT_05173___ 920 ATCTCATC----CAACACGCCTCAAAGAAGGAAAACCTTCCTGCTCACAT 965
.|||.||| .||| ||||...|.||||||||||||||| || |
RBAM_031530__ 920 GTCTGATCGGGGAAAC-CGCCGGCACGAAGGAAAACCTTCC-GC-----T 962
BSNT_05173___ 966 GTGA 969
.|||
RBAM_031530__ 963 TTGA 966
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