Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01794 and RBAM_031390
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:30
# Commandline: needle
# -asequence dna-align/BSNT_01794___yhjM.1.9828.seq
# -bsequence dna-align/RBAM_031390.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01794___yhjM-RBAM_031390.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01794___yhjM-RBAM_031390.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01794___yhjM
# 2: RBAM_031390
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1173
# Identity: 589/1173 (50.2%)
# Similarity: 589/1173 (50.2%)
# Gaps: 381/1173 (32.5%)
# Score: 1211.0
#
#
#=======================================
BSNT_01794___ 1 ATGCCTACAATTGATGAAATAGCAAA-ATTATGC-AATGTGTCTAAAACC 48
|||.|.|..|||...||.|||||||| | |.|| ||.||.|||...||.
RBAM_031390 1 ATGACAAACATTACAGAGATAGCAAAGA--AAGCGAACGTTTCTCGGACA 48
BSNT_01794___ 49 ACAGTGTCAAGAGTATTGAATAATCATCCGTATGTGTCGAAA----GAAA 94
|||||.||.|||||..|.||.||||||||.||||| ||| ||.|
RBAM_031390 49 ACAGTTTCCAGAGTTCTCAACAATCATCCTTATGT----AAAACCTGAGA 94
BSNT_01794___ 95 AAAGAGA---TATGATCTTAAAGGCAATTAACGAACTTGACTACACTCCC 141
|..|.|| |.|| |||||.||.||.||.|||.| .
RBAM_031390 95 AGCGGGACGCTGTG---TTAAAAGCTATGAAGGAATT------------A 129
BSNT_01794___ 142 AATTATTTAGCTCGGAATTTT--AGGAGA--AA--TA---AG-----ACA 177
||||||.||.| ||.||| |.|.|| || || || |.|
RBAM_031390 130 AATTATGTACC----AAATTTCAACGCGATTAACCTATCCAGGGGGAAGA 175
BSNT_01794___ 178 CAAACGATAGCTTTA-TCG--------GTTCCGAGTATCGACCATCCATT 218
|||| |.|| ||| |||||.|..|||.|||||||.||
RBAM_031390 176 CAAA-------TGTATTCGGAGTCATTGTTCCTAAAATCAACCATCCGTT 218
BSNT_01794___ 219 TTTTGCTCAATTAAT------AAAAGGGGTCTCTCATGAAGCACTGTTTA 262
|||...|.||.|.|| ||.||| .|||| .||.||
RBAM_031390 219 TTTCAGTAAACTGATTGCCGGAATAGG---------CGAAG---AGTGTA 256
BSNT_01794___ 263 AGAATTACAAGGTAATTGTATTTCAGACCTTTT------ATGACAAACA- 305
|.|| ||| |||||..|.||.| |||.| || ||||.|
RBAM_031390 257 ATAA--ACA---TAATTACAGTTTA---CTTGTGCACCAAT--CAAATAA 296
BSNT_01794___ 306 -GA--CAGAGCTAGAATTATTAGAGTT---------ATTGAAACATAAA- 342
|| |.||.|.||| |.|.||||| |||||||.|.|||
RBAM_031390 297 CGATCCTGAACAAGA---AATGGAGTTTTTTAACAGATTGAAATACAAAC 343
BSNT_01794___ 343 -GAAGTGGATGGTATTATTCTTGGAA--CTTTAGAA--------AATGAA 381
|| |.||.|||.||||| ||||.| ||.||.|| .|.|.|
RBAM_031390 344 TGA--TTGACGGTCTTATT-TTGGGATCCTGTATAAGCCCTCATCACGTA 390
BSNT_01794___ 382 TGGGATCAGATATC-------------------CCCT-------TTCTTA 405
...||..||||||| .||| ||||..
RBAM_031390 391 CTCGACGAGATATCTGAGTTTGGCAATATTGTTTCCTGTGAAGCTTCTGC 440
BSNT_01794___ 406 AAGTA-------TGGTCCTAT-CTTATTATGTAATGAATATCATCACTCA 447
|||.| ||..|.||| .|||||| |||||.|.|||
RBAM_031390 441 AAGCAAACAGGTTGCACATATATTTATTA----------ATCATGAGTCA 480
BSNT_01794___ 448 GCGGACATCACGAT---AATTGGGTATGAT----GAATTTGAAGCTAC-- 488
||| ||||..|| ||||| ||.|| |||.|..|.| ||
RBAM_031390 481 --GGA-ATCAAAATGGCAATTG---ATCATCTGCGAAATCAAGG--ACAT 522
BSNT_01794___ 489 --ATACATGGGGGTA-GTACATTTAATTGAAAGAG-------GGCATA-- 526
||.|||.||..|| |||.|...|||...||||| ||||||
RBAM_031390 523 CAATCCATTGGTCTATGTATAGGAAATCCTAAGAGCGGTGTTGGCATAAG 572
BSNT_01794___ 527 ---AAAAAATTGGGTTTTGTTTTGATACTCCATATAGCGAAGCTCAATGT 573
||||||.|...|||| |||.|.|
RBAM_031390 573 CAGAAAAAAATCATTTTT-------------------------TCACTTT 597
BSNT_01794___ 574 CAGAGGAAAGAGGGTTATTTGAAAGCTTTACAAGATTAC-GATTTACATC 622
| |||| |||| ||| ||||.|.||
RBAM_031390 598 C----GAAA----------TGAA-------------TACGGATTGAAAT- 619
BSNT_01794___ 623 ATAGAAGCG--AATGGATA-TTCGGCGAAATGTTTAATATCGAGGATGGC 669
|.||.| |||.|.|| ||.|..|||..||..|.|||.|||.||||
RBAM_031390 620 ---GGAGTGATAATTGGTACTTTGAGGAACAGTACACTATTGAGAATGG- 665
BSNT_01794___ 670 TTTCGTGTTTTTCATA-----AGATAAAGGAT--CTAA--AGGACA---- 706
.||| ||..|||..|| |||| |.|.||
RBAM_031390 666 ------------TATAGAAATAGCAAAATTATTACTAAATAAGTCACCTC 703
BSNT_01794___ 707 GACCCTCAGCAATATTTACAGGAAATGATCAAGTCGCCGCAGGGATTATT 756
|.||..|.|||||..||..|||||.||||.|.||.||.||||||||.|||
RBAM_031390 704 GTCCTGCGGCAATGGTTGTAGGAAGTGATTATGTTGCGGCAGGGATCATT 753
BSNT_01794___ 757 AAACAGGCGATGAAAAATGGCTTTAA----AGTTCCAGAAGACTTAGCTG 802
.|..|.||||..|.|.|.|| || |.|.||.|||||..|.||.|
RBAM_031390 754 TATGAAGCGAAAAGACAGGG----AATACGAATACCTGAAGAACTGGCGG 799
BSNT_01794___ 803 TAATTGGTTTTGACAACC----------------AATTGATCTGCCAAGT 836
|.||.||.|||||.||.| |||.||.||..|||
RBAM_031390 800 TTATAGGATTTGATAATCAGCCGATATCTAAGGTAATAGAACTTTCAA-- 847
BSNT_01794___ 837 CGTTACTCCGACCATAACAA-CAATTGATATCCCCGTAATAGAATTAGGT 885
||.||| |.||| ||||| |.|||.||.||.
RBAM_031390 848 CGATAC---------ATCAACCAATT------------AAAGAGTTGGGA 876
BSNT_01794___ 886 C-AACAGGCTGTGTTGAAAATCATCGAGTCCATTTCGGGTAATGCCACTT 934
| ||||| ||.|.|.|..||| ||...||||
RBAM_031390 877 CAAACAG--------------CAGCAAATTTATT-------ATATAACTT 905
BSNT_01794___ 935 TA-----AACAGAAGA----------ATTATTAAACTGCCAAC--AAAGC 967
.| |||| |||| ||.|.|||..|| ||| |||.|
RBAM_031390 906 AATGAATAACA-AAGATGTCCCCAATATAAATAAGTTG--AACCTAAAAC 952
BSNT_01794___ 968 TTATTATAAGAGAATCAACGTAA 990
||||||.||||.|.|||||.|||
RBAM_031390 953 TTATTAAAAGAAAGTCAACTTAA 975
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