Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05141 and RBAM_031360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:38
# Commandline: needle
# -asequence dna-align/BSNT_05141___yvbV.1.9828.seq
# -bsequence dna-align/RBAM_031360___yvbV.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05141___yvbV-RBAM_031360___yvbV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05141___yvbV-RBAM_031360___yvbV.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05141___yvbV
# 2: RBAM_031360___yvbV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity: 716/938 (76.3%)
# Similarity: 716/938 (76.3%)
# Gaps: 40/938 ( 4.3%)
# Score: 2708.5
#
#
#=======================================
BSNT_05141___ 1 ATGAAGCAGCTCTCAAAAACGCGGACAGCTCTCCTGCTCGCATTTCTCGT 50
.||||.|||||.||.||||..|.|||.|||||..||||.||.|||||.||
RBAM_031360__ 1 GTGAAACAGCTTTCGAAAATACAGACGGCTCTTATGCTGGCGTTTCTAGT 50
BSNT_05141___ 51 CATCATGTGGGGCGTCAATTGGCCGCTGTCCAAAGCCGCGCTCGCCTATT 100
||...|.|||||..|.||.|||||||||.|.||.||||||||.|||||||
RBAM_031360__ 51 CACGGTATGGGGAATTAACTGGCCGCTGACAAAGGCCGCGCTTGCCTATT 100
BSNT_05141___ 101 CTCCGCCATTATTGTTCGCGGGCATCCGAACGCTGATCGGCGGGCTTTTA 150
|.|||||..|..||||.||.||.|||||.||||||||||||||.|||.||
RBAM_031360__ 101 CGCCGCCTCTTCTGTTTGCCGGAATCCGCACGCTGATCGGCGGACTTCTA 150
BSNT_05141___ 151 TTAGTCATTGTCGCACTGCCGCGTATTCATAAATTACGCTTAAAAGAAAC 200
|||.|.||.||.||.|||||.|||.||.|.||..|.||.||.||||||||
RBAM_031360__ 151 TTATTAATGGTGGCGCTGCCCCGTTTTAAAAAGCTGCGTTTTAAAGAAAC 200
BSNT_05141___ 201 GTGGCCGATTTATCTTGTTTCTGCTCTTTTAAATATTACATTATTCTACG 250
|||||||||.||||||.|||||||..|||||||||||||.|||||.||||
RBAM_031360__ 201 GTGGCCGATCTATCTTATTTCTGCCATTTTAAATATTACTTTATTTTACG 250
BSNT_05141___ 251 GCCTGCAAACGATCGGGCTGAATTATCTTCCGGCCGGCCTGTTTTCTGCA 300
|||||||||||.||||..|||||||.||.||.||||||.|.|||||.||.
RBAM_031360__ 251 GCCTGCAAACGGTCGGCTTGAATTACCTGCCTGCCGGCTTATTTTCAGCC 300
BSNT_05141___ 301 ATCGTCTTCTTCCAGCCTGTTCTGATGGGTGTATTTTCTTGGCTGTGGCT 350
|||||.||.||||||||.||..|.|||||.||.|||||||||||||||||
RBAM_031360__ 301 ATCGTGTTTTTCCAGCCGGTGTTAATGGGCGTTTTTTCTTGGCTGTGGCT 350
BSNT_05141___ 351 CGGCGAATCCATGT----TTGTAATGAAAGTGATCGGGCTCATCCTCGGT 396
|||.|||||.|||| || |.|||.|...|||.||.||.||.||.
RBAM_031360__ 351 CGGGGAATCGATGTATCCTT----TAAAAATAGCCGGTCTTATTCTGGGC 396
BSNT_05141___ 397 TTTGCGGGAGTAGCCGTCATTAGTGCTGCGGGCTTTGGCGGGCATATTTC 446
|||||.||.||.||||||||.||.||.||.||.||.||.||.||||||||
RBAM_031360__ 397 TTTGCCGGTGTCGCCGTCATCAGCGCAGCCGGTTTCGGAGGCCATATTTC 446
BSNT_05141___ 447 TGTCATTGGGATTCTTCTGGCTCTCGGCTCCGCAATCAGCTGGGCGCTCG 496
|.||...||.||||||.||||..|.||||||||..|||||||||||||||
RBAM_031360__ 447 TATCGCCGGCATTCTTTTGGCCTTAGGCTCCGCGGTCAGCTGGGCGCTCG 496
BSNT_05141___ 497 GGACGGTATATATGAAAAAAACAGGCAGCCGCGTCGATTCCATCTGGATG 546
|.|||||||||.||||||.|||.|||.|.||||..||..|.|||||||||
RBAM_031360__ 497 GCACGGTATATGTGAAAAGAACGGGCGGACGCGCGGACGCTATCTGGATG 546
BSNT_05141___ 547 GTCGCTCTGCAGCTGACGATCGGAAGCGTGTTTCTGCTT---ATATCCGG 593
||||||||||||||...||||||..||||| |||||| |..|||||
RBAM_031360__ 547 GTCGCTCTGCAGCTTCTGATCGGCGGCGTG---CTGCTTGTCAGCTCCGG 593
BSNT_05141___ 594 C---TTTTGGACAGAAAGCTTTTCGGCGATCCAATGGACAGCTCCGTTTA 640
| |||| |||||||||||||.|||||.|||||||.|||||||||.|
RBAM_031360__ 594 CCATTTTT---CAGAAAGCTTTTCAGCGATTCAATGGAAAGCTCCGTTCA 640
BSNT_05141___ 641 -TCACGAGCCTGCTGTTCATCTCCGTATTCGTTATCGCGCTCGGCTGGCT 689
||.| |||||.||||||||.||.||.||.||||||||||||||||||||
RBAM_031360__ 641 TTCTC-AGCCTTCTGTTCATTTCAGTTTTTGTTATCGCGCTCGGCTGGCT 689
BSNT_05141___ 690 TGTCTTTTTTACGCTTGTCGGTTCAGGCGAAGCAAGCAAGGTCGCATCTT 739
.|.||||||||||||||||||||||||.||||||||||||||.||.||||
RBAM_031360__ 690 CGCCTTTTTTACGCTTGTCGGTTCAGGGGAAGCAAGCAAGGTTGCCTCTT 739
BSNT_05141___ 740 ATACTTTTTTGATTCCGCTCATATCAAT---CGTGGCCAGCTCCATTTTC 786
|.||.||..||||.|||||||||||.|| ||| ||||||.||.|||
RBAM_031360__ 740 ACACCTTCCTGATCCCGCTCATATCCATTACCGT---CAGCTCGATATTC 786
BSNT_05141___ 787 CTGCATGAACCGCTCACCCTTAGCCTCTTGGCAGGGCTGCTGCTGATTGT 836
||||||||.|||||.|||.|.|||||.||.||.||.|||||.|||||.||
RBAM_031360__ 787 CTGCATGAGCCGCTGACCGTCAGCCTTTTAGCCGGACTGCTTCTGATCGT 836
BSNT_05141___ 837 CACGAGCATCTGTCTCGTGAATACAAAATCAAAAGCGCAGAAA------G 880
|||.|||||.|||.|.|||||||.||.|.||||....|.|||| |
RBAM_031360__ 837 CACAAGCATTTGTTTTGTGAATATAACACCAAAGAAACTGAAAACACCTG 886
BSNT_05141___ 881 CTGCGGCGATTGGTATAAACGAGAAAGCTGCACAATAA 918
||..||| .|.|.||| |.||.||.|..||.|||
RBAM_031360__ 887 CTCTGGC----CGCAGAAA--AAAAGGCCGTTCATTAA 918
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