Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05141 and RBAM_031360

See Amino acid alignment / Visit BSNT_05141 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:38
# Commandline: needle
#    -asequence dna-align/BSNT_05141___yvbV.1.9828.seq
#    -bsequence dna-align/RBAM_031360___yvbV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05141___yvbV-RBAM_031360___yvbV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05141___yvbV-RBAM_031360___yvbV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05141___yvbV
# 2: RBAM_031360___yvbV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity:     716/938 (76.3%)
# Similarity:   716/938 (76.3%)
# Gaps:          40/938 ( 4.3%)
# Score: 2708.5
# 
#
#=======================================

BSNT_05141___      1 ATGAAGCAGCTCTCAAAAACGCGGACAGCTCTCCTGCTCGCATTTCTCGT     50
                     .||||.|||||.||.||||..|.|||.|||||..||||.||.|||||.||
RBAM_031360__      1 GTGAAACAGCTTTCGAAAATACAGACGGCTCTTATGCTGGCGTTTCTAGT     50

BSNT_05141___     51 CATCATGTGGGGCGTCAATTGGCCGCTGTCCAAAGCCGCGCTCGCCTATT    100
                     ||...|.|||||..|.||.|||||||||.|.||.||||||||.|||||||
RBAM_031360__     51 CACGGTATGGGGAATTAACTGGCCGCTGACAAAGGCCGCGCTTGCCTATT    100

BSNT_05141___    101 CTCCGCCATTATTGTTCGCGGGCATCCGAACGCTGATCGGCGGGCTTTTA    150
                     |.|||||..|..||||.||.||.|||||.||||||||||||||.|||.||
RBAM_031360__    101 CGCCGCCTCTTCTGTTTGCCGGAATCCGCACGCTGATCGGCGGACTTCTA    150

BSNT_05141___    151 TTAGTCATTGTCGCACTGCCGCGTATTCATAAATTACGCTTAAAAGAAAC    200
                     |||.|.||.||.||.|||||.|||.||.|.||..|.||.||.||||||||
RBAM_031360__    151 TTATTAATGGTGGCGCTGCCCCGTTTTAAAAAGCTGCGTTTTAAAGAAAC    200

BSNT_05141___    201 GTGGCCGATTTATCTTGTTTCTGCTCTTTTAAATATTACATTATTCTACG    250
                     |||||||||.||||||.|||||||..|||||||||||||.|||||.||||
RBAM_031360__    201 GTGGCCGATCTATCTTATTTCTGCCATTTTAAATATTACTTTATTTTACG    250

BSNT_05141___    251 GCCTGCAAACGATCGGGCTGAATTATCTTCCGGCCGGCCTGTTTTCTGCA    300
                     |||||||||||.||||..|||||||.||.||.||||||.|.|||||.||.
RBAM_031360__    251 GCCTGCAAACGGTCGGCTTGAATTACCTGCCTGCCGGCTTATTTTCAGCC    300

BSNT_05141___    301 ATCGTCTTCTTCCAGCCTGTTCTGATGGGTGTATTTTCTTGGCTGTGGCT    350
                     |||||.||.||||||||.||..|.|||||.||.|||||||||||||||||
RBAM_031360__    301 ATCGTGTTTTTCCAGCCGGTGTTAATGGGCGTTTTTTCTTGGCTGTGGCT    350

BSNT_05141___    351 CGGCGAATCCATGT----TTGTAATGAAAGTGATCGGGCTCATCCTCGGT    396
                     |||.|||||.||||    ||    |.|||.|...|||.||.||.||.||.
RBAM_031360__    351 CGGGGAATCGATGTATCCTT----TAAAAATAGCCGGTCTTATTCTGGGC    396

BSNT_05141___    397 TTTGCGGGAGTAGCCGTCATTAGTGCTGCGGGCTTTGGCGGGCATATTTC    446
                     |||||.||.||.||||||||.||.||.||.||.||.||.||.||||||||
RBAM_031360__    397 TTTGCCGGTGTCGCCGTCATCAGCGCAGCCGGTTTCGGAGGCCATATTTC    446

BSNT_05141___    447 TGTCATTGGGATTCTTCTGGCTCTCGGCTCCGCAATCAGCTGGGCGCTCG    496
                     |.||...||.||||||.||||..|.||||||||..|||||||||||||||
RBAM_031360__    447 TATCGCCGGCATTCTTTTGGCCTTAGGCTCCGCGGTCAGCTGGGCGCTCG    496

BSNT_05141___    497 GGACGGTATATATGAAAAAAACAGGCAGCCGCGTCGATTCCATCTGGATG    546
                     |.|||||||||.||||||.|||.|||.|.||||..||..|.|||||||||
RBAM_031360__    497 GCACGGTATATGTGAAAAGAACGGGCGGACGCGCGGACGCTATCTGGATG    546

BSNT_05141___    547 GTCGCTCTGCAGCTGACGATCGGAAGCGTGTTTCTGCTT---ATATCCGG    593
                     ||||||||||||||...||||||..|||||   ||||||   |..|||||
RBAM_031360__    547 GTCGCTCTGCAGCTTCTGATCGGCGGCGTG---CTGCTTGTCAGCTCCGG    593

BSNT_05141___    594 C---TTTTGGACAGAAAGCTTTTCGGCGATCCAATGGACAGCTCCGTTTA    640
                     |   ||||   |||||||||||||.|||||.|||||||.|||||||||.|
RBAM_031360__    594 CCATTTTT---CAGAAAGCTTTTCAGCGATTCAATGGAAAGCTCCGTTCA    640

BSNT_05141___    641 -TCACGAGCCTGCTGTTCATCTCCGTATTCGTTATCGCGCTCGGCTGGCT    689
                      ||.| |||||.||||||||.||.||.||.||||||||||||||||||||
RBAM_031360__    641 TTCTC-AGCCTTCTGTTCATTTCAGTTTTTGTTATCGCGCTCGGCTGGCT    689

BSNT_05141___    690 TGTCTTTTTTACGCTTGTCGGTTCAGGCGAAGCAAGCAAGGTCGCATCTT    739
                     .|.||||||||||||||||||||||||.||||||||||||||.||.||||
RBAM_031360__    690 CGCCTTTTTTACGCTTGTCGGTTCAGGGGAAGCAAGCAAGGTTGCCTCTT    739

BSNT_05141___    740 ATACTTTTTTGATTCCGCTCATATCAAT---CGTGGCCAGCTCCATTTTC    786
                     |.||.||..||||.|||||||||||.||   |||   ||||||.||.|||
RBAM_031360__    740 ACACCTTCCTGATCCCGCTCATATCCATTACCGT---CAGCTCGATATTC    786

BSNT_05141___    787 CTGCATGAACCGCTCACCCTTAGCCTCTTGGCAGGGCTGCTGCTGATTGT    836
                     ||||||||.|||||.|||.|.|||||.||.||.||.|||||.|||||.||
RBAM_031360__    787 CTGCATGAGCCGCTGACCGTCAGCCTTTTAGCCGGACTGCTTCTGATCGT    836

BSNT_05141___    837 CACGAGCATCTGTCTCGTGAATACAAAATCAAAAGCGCAGAAA------G    880
                     |||.|||||.|||.|.|||||||.||.|.||||....|.||||      |
RBAM_031360__    837 CACAAGCATTTGTTTTGTGAATATAACACCAAAGAAACTGAAAACACCTG    886

BSNT_05141___    881 CTGCGGCGATTGGTATAAACGAGAAAGCTGCACAATAA    918
                     ||..|||    .|.|.|||  |.||.||.|..||.|||
RBAM_031360__    887 CTCTGGC----CGCAGAAA--AAAAGGCCGTTCATTAA    918


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