Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05139 and RBAM_031340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:37
# Commandline: needle
# -asequence dna-align/BSNT_05139___yvbT.1.9828.seq
# -bsequence dna-align/RBAM_031340___yvbT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05139___yvbT-RBAM_031340___yvbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05139___yvbT-RBAM_031340___yvbT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05139___yvbT
# 2: RBAM_031340___yvbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity: 813/1016 (80.0%)
# Similarity: 813/1016 (80.0%)
# Gaps: 13/1016 ( 1.3%)
# Score: 3213.0
#
#
#=======================================
BSNT_05139___ 1 ATGTCT-AACAACCAACGCAAAGATACCTTGC--TTTCTGTCTTGAATTT 47
|||.|| ||||..||..| |||||||| ||| ||||.||.||||||||
RBAM_031340__ 1 ATGGCTGAACATACATTG-AAAGATAC--TGCGTTTTCCGTATTGAATTT 47
BSNT_05139___ 48 ATCTCCGGTTGTTCAGGGAGGAACGATTGCAGAATCATTCCGAAACAGCA 97
|||.|||||.||.|||||.||||||.||||.|||||.|||||.|||||||
RBAM_031340__ 48 ATCGCCGGTCGTACAGGGGGGAACGGTTGCTGAATCGTTCCGCAACAGCA 97
BSNT_05139___ 98 TGGACTTGGCGCGCCGGGCAGAGGAATGGGGCTATCACCGTTACTGGCTT 147
||||.||.||||||||.||.|||||.|||||||||.||||.||.||||||
RBAM_031340__ 98 TGGATTTAGCGCGCCGCGCCGAGGAGTGGGGCTATAACCGCTATTGGCTT 147
BSNT_05139___ 148 GCTGAACATCATAATATAGAAGGTGTTGCAAGCTCTGCCACCGCAGTTTT 197
||.||.|||||||||||||||||.|||||.|||||.||.||.||.||..|
RBAM_031340__ 148 GCGGAGCATCATAATATAGAAGGAGTTGCCAGCTCGGCAACGGCGGTGCT 197
BSNT_05139___ 198 GATTGGCCATATTGCCGGAGGCACGAAGAAAATCCGCGTCGGTTCCGGCG 247
|||.|||||.||.||||||||||||||.|||||||||||||||||.||.|
RBAM_031340__ 198 GATCGGCCACATCGCCGGAGGCACGAAAAAAATCCGCGTCGGTTCTGGGG 247
BSNT_05139___ 248 GCATTATGCTCCCGAACCACTCTTCATTAGTCATTGCTGAACAATTCGGC 297
|.||||||||.|||||.||.||||||.|.||.||.||.||.||||||||.
RBAM_031340__ 248 GTATTATGCTGCCGAATCATTCTTCACTTGTGATCGCGGAGCAATTCGGA 297
BSNT_05139___ 298 ACACTGGAAACACTGTATCCCGGGCGGATTGATCTGGGGCTTGGACGTGC 347
||.||.|||||..|||||||.|||||||||||.||||||||.|||||.||
RBAM_031340__ 298 ACCCTTGAAACGTTGTATCCGGGGCGGATTGACCTGGGGCTCGGACGCGC 347
BSNT_05139___ 348 GCCGGGAACAGACCAATTGACAGCCAGAGCGCTCCGAAGAAACATCAACA 397
||||||.||.||||||||.||.||.|||||..|.|||||||||||.||||
RBAM_031340__ 348 GCCGGGGACCGACCAATTAACGGCGAGAGCCTTACGAAGAAACATAAACA 397
BSNT_05139___ 398 GCGGTGAGGATTTTCCAGAACAATTAGAGGAACTGCGCAATTATTTTAAA 447
||||.||.||||||||.||.||..|.||.|||.||.|.|||||.||.|||
RBAM_031340__ 398 GCGGGGAAGATTTTCCGGAGCAGCTTGAAGAATTGAGAAATTACTTCAAA 447
BSNT_05139___ 448 CCGTCAGGAAATGTGCGCAATCAAGTTCGCGCCATTCCCGGAG-AGGGCA 496
|||||.||.|||||||||||||||||.|||||||||||.||.| |||||
RBAM_031340__ 448 CCGTCCGGCAATGTGCGCAATCAAGTCCGCGCCATTCCGGGCGAAGGGC- 496
BSNT_05139___ 497 TAGATGTGCCGATTTGGCTGCTGGGCTCAAGCGGCTTCAGCGCCCGTCTG 546
|.||.||||||||.|||||..||||||||||||||||||||||.|||||.
RBAM_031340__ 497 TGGACGTGCCGATCTGGCTTTTGGGCTCAAGCGGCTTCAGCGCGCGTCTT 546
BSNT_05139___ 547 GCTGGCGAACTTGGTCTTCCGTTTGCGTTCGCGGCCCATTTCTCACCGGC 596
||.||.||.||.||.||||||||.||.||.|||||.||.||.||||||..
RBAM_031340__ 547 GCGGGAGAGCTCGGGCTTCCGTTCGCCTTTGCGGCTCACTTTTCACCGAA 596
BSNT_05139___ 597 GAATACGGTTCCCGCTTTGGAGCTGTACCGCAATTCCTTCACG-CCGTCA 645
.||.||.||.|||||..|.|||||||||||||..|||||| || ||.|||
RBAM_031340__ 597 AAACACCGTGCCCGCCCTTGAGCTGTACCGCAGCTCCTTC-CGTCCATCA 645
BSNT_05139___ 646 GACGTGCTCGACGAACCGTATGCGATGGTCGGTGTCACCATTATCGCGGC 695
|||||.||.||..|||||||.|||||||||||.||||||.|.||.||.||
RBAM_031340__ 646 GACGTACTGGATCAACCGTACGCGATGGTCGGCGTCACCGTCATTGCCGC 695
BSNT_05139___ 696 AGATACAAACGAGAAAGCGCAGCACCTTGCGACTTCGCATTATCAAAGGT 745
.|||||..||||.||.|||.||||.||.||.||.||||||||||||||.|
RBAM_031340__ 696 CGATACGGACGAAAAGGCGGAGCATCTGGCAACATCGCATTATCAAAGAT 745
BSNT_05139___ 746 TTCTTGATCTTGTCCGCGGTACGCCGAACCAGCTTAAACCGCCTGTTGAG 795
||.|.||.||.||||||||.||||||||||||||.||.||.||||||||.
RBAM_031340__ 746 TTTTAGACCTCGTCCGCGGCACGCCGAACCAGCTGAAGCCTCCTGTTGAA 795
BSNT_05139___ 796 GATATGGACCAAATCTGGAGCCCGTATGAAAAAGCGATGGTCAATGAGCA 845
||.|||||.|||||||||...||||||||||||||||||||||||||.||
RBAM_031340__ 796 GACATGGATCAAATCTGGTCGCCGTATGAAAAAGCGATGGTCAATGAACA 845
BSNT_05139___ 846 GCTGAGCTCCACGATTGTCGGAGGTCCGGAAGAAGTGAAGGCGAAGCTTG 895
|||.|||||.|||||.|||||.||.|||||....|||||||..|||||.|
RBAM_031340__ 846 GCTCAGCTCAACGATCGTCGGCGGACCGGAGCGTGTGAAGGAAAAGCTGG 895
BSNT_05139___ 896 AAGATTTCGTCAAAACGACACAGGCTGACGAAATTATGGTTAACTCAGAA 945
||...|||.||...||.||||||||.||.|||||.|||||.||.||||||
RBAM_031340__ 896 AAAGCTTCATCCGGACAACACAGGCGGATGAAATCATGGTGAATTCAGAA 945
BSNT_05139___ 946 ACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGT 995
|.||||||.||.||.|||||||||.|.||.|||||||||||||| ||.
RBAM_031340__ 946 AGCTTTGAGCATGCTGACAGAATGAGATCATTTGAAATCATCGC---CGA 992
BSNT_05139___ 996 TTGGAACAACAGATAA 1011
.|..||.|||||.|.|
RBAM_031340__ 993 ATTAAAAAACAGCTGA 1008
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