Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05139 and RBAM_031340

See Amino acid alignment / Visit BSNT_05139 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:37
# Commandline: needle
#    -asequence dna-align/BSNT_05139___yvbT.1.9828.seq
#    -bsequence dna-align/RBAM_031340___yvbT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05139___yvbT-RBAM_031340___yvbT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05139___yvbT-RBAM_031340___yvbT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05139___yvbT
# 2: RBAM_031340___yvbT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1016
# Identity:     813/1016 (80.0%)
# Similarity:   813/1016 (80.0%)
# Gaps:          13/1016 ( 1.3%)
# Score: 3213.0
# 
#
#=======================================

BSNT_05139___      1 ATGTCT-AACAACCAACGCAAAGATACCTTGC--TTTCTGTCTTGAATTT     47
                     |||.|| ||||..||..| ||||||||  |||  ||||.||.||||||||
RBAM_031340__      1 ATGGCTGAACATACATTG-AAAGATAC--TGCGTTTTCCGTATTGAATTT     47

BSNT_05139___     48 ATCTCCGGTTGTTCAGGGAGGAACGATTGCAGAATCATTCCGAAACAGCA     97
                     |||.|||||.||.|||||.||||||.||||.|||||.|||||.|||||||
RBAM_031340__     48 ATCGCCGGTCGTACAGGGGGGAACGGTTGCTGAATCGTTCCGCAACAGCA     97

BSNT_05139___     98 TGGACTTGGCGCGCCGGGCAGAGGAATGGGGCTATCACCGTTACTGGCTT    147
                     ||||.||.||||||||.||.|||||.|||||||||.||||.||.||||||
RBAM_031340__     98 TGGATTTAGCGCGCCGCGCCGAGGAGTGGGGCTATAACCGCTATTGGCTT    147

BSNT_05139___    148 GCTGAACATCATAATATAGAAGGTGTTGCAAGCTCTGCCACCGCAGTTTT    197
                     ||.||.|||||||||||||||||.|||||.|||||.||.||.||.||..|
RBAM_031340__    148 GCGGAGCATCATAATATAGAAGGAGTTGCCAGCTCGGCAACGGCGGTGCT    197

BSNT_05139___    198 GATTGGCCATATTGCCGGAGGCACGAAGAAAATCCGCGTCGGTTCCGGCG    247
                     |||.|||||.||.||||||||||||||.|||||||||||||||||.||.|
RBAM_031340__    198 GATCGGCCACATCGCCGGAGGCACGAAAAAAATCCGCGTCGGTTCTGGGG    247

BSNT_05139___    248 GCATTATGCTCCCGAACCACTCTTCATTAGTCATTGCTGAACAATTCGGC    297
                     |.||||||||.|||||.||.||||||.|.||.||.||.||.||||||||.
RBAM_031340__    248 GTATTATGCTGCCGAATCATTCTTCACTTGTGATCGCGGAGCAATTCGGA    297

BSNT_05139___    298 ACACTGGAAACACTGTATCCCGGGCGGATTGATCTGGGGCTTGGACGTGC    347
                     ||.||.|||||..|||||||.|||||||||||.||||||||.|||||.||
RBAM_031340__    298 ACCCTTGAAACGTTGTATCCGGGGCGGATTGACCTGGGGCTCGGACGCGC    347

BSNT_05139___    348 GCCGGGAACAGACCAATTGACAGCCAGAGCGCTCCGAAGAAACATCAACA    397
                     ||||||.||.||||||||.||.||.|||||..|.|||||||||||.||||
RBAM_031340__    348 GCCGGGGACCGACCAATTAACGGCGAGAGCCTTACGAAGAAACATAAACA    397

BSNT_05139___    398 GCGGTGAGGATTTTCCAGAACAATTAGAGGAACTGCGCAATTATTTTAAA    447
                     ||||.||.||||||||.||.||..|.||.|||.||.|.|||||.||.|||
RBAM_031340__    398 GCGGGGAAGATTTTCCGGAGCAGCTTGAAGAATTGAGAAATTACTTCAAA    447

BSNT_05139___    448 CCGTCAGGAAATGTGCGCAATCAAGTTCGCGCCATTCCCGGAG-AGGGCA    496
                     |||||.||.|||||||||||||||||.|||||||||||.||.| ||||| 
RBAM_031340__    448 CCGTCCGGCAATGTGCGCAATCAAGTCCGCGCCATTCCGGGCGAAGGGC-    496

BSNT_05139___    497 TAGATGTGCCGATTTGGCTGCTGGGCTCAAGCGGCTTCAGCGCCCGTCTG    546
                     |.||.||||||||.|||||..||||||||||||||||||||||.|||||.
RBAM_031340__    497 TGGACGTGCCGATCTGGCTTTTGGGCTCAAGCGGCTTCAGCGCGCGTCTT    546

BSNT_05139___    547 GCTGGCGAACTTGGTCTTCCGTTTGCGTTCGCGGCCCATTTCTCACCGGC    596
                     ||.||.||.||.||.||||||||.||.||.|||||.||.||.||||||..
RBAM_031340__    547 GCGGGAGAGCTCGGGCTTCCGTTCGCCTTTGCGGCTCACTTTTCACCGAA    596

BSNT_05139___    597 GAATACGGTTCCCGCTTTGGAGCTGTACCGCAATTCCTTCACG-CCGTCA    645
                     .||.||.||.|||||..|.|||||||||||||..|||||| || ||.|||
RBAM_031340__    597 AAACACCGTGCCCGCCCTTGAGCTGTACCGCAGCTCCTTC-CGTCCATCA    645

BSNT_05139___    646 GACGTGCTCGACGAACCGTATGCGATGGTCGGTGTCACCATTATCGCGGC    695
                     |||||.||.||..|||||||.|||||||||||.||||||.|.||.||.||
RBAM_031340__    646 GACGTACTGGATCAACCGTACGCGATGGTCGGCGTCACCGTCATTGCCGC    695

BSNT_05139___    696 AGATACAAACGAGAAAGCGCAGCACCTTGCGACTTCGCATTATCAAAGGT    745
                     .|||||..||||.||.|||.||||.||.||.||.||||||||||||||.|
RBAM_031340__    696 CGATACGGACGAAAAGGCGGAGCATCTGGCAACATCGCATTATCAAAGAT    745

BSNT_05139___    746 TTCTTGATCTTGTCCGCGGTACGCCGAACCAGCTTAAACCGCCTGTTGAG    795
                     ||.|.||.||.||||||||.||||||||||||||.||.||.||||||||.
RBAM_031340__    746 TTTTAGACCTCGTCCGCGGCACGCCGAACCAGCTGAAGCCTCCTGTTGAA    795

BSNT_05139___    796 GATATGGACCAAATCTGGAGCCCGTATGAAAAAGCGATGGTCAATGAGCA    845
                     ||.|||||.|||||||||...||||||||||||||||||||||||||.||
RBAM_031340__    796 GACATGGATCAAATCTGGTCGCCGTATGAAAAAGCGATGGTCAATGAACA    845

BSNT_05139___    846 GCTGAGCTCCACGATTGTCGGAGGTCCGGAAGAAGTGAAGGCGAAGCTTG    895
                     |||.|||||.|||||.|||||.||.|||||....|||||||..|||||.|
RBAM_031340__    846 GCTCAGCTCAACGATCGTCGGCGGACCGGAGCGTGTGAAGGAAAAGCTGG    895

BSNT_05139___    896 AAGATTTCGTCAAAACGACACAGGCTGACGAAATTATGGTTAACTCAGAA    945
                     ||...|||.||...||.||||||||.||.|||||.|||||.||.||||||
RBAM_031340__    896 AAAGCTTCATCCGGACAACACAGGCGGATGAAATCATGGTGAATTCAGAA    945

BSNT_05139___    946 ACCTTTGAACACGCAGACAGAATGCGTTCGTTTGAAATCATCGCTGACGT    995
                     |.||||||.||.||.|||||||||.|.||.||||||||||||||   ||.
RBAM_031340__    946 AGCTTTGAGCATGCTGACAGAATGAGATCATTTGAAATCATCGC---CGA    992

BSNT_05139___    996 TTGGAACAACAGATAA   1011
                     .|..||.|||||.|.|
RBAM_031340__    993 ATTAAAAAACAGCTGA   1008


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