Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05883 and RBAM_031250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:24
# Commandline: needle
# -asequence dna-align/BSNT_05883___ywaD.1.9828.seq
# -bsequence dna-align/RBAM_031250___ywaD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05883___ywaD-RBAM_031250___ywaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05883___ywaD-RBAM_031250___ywaD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05883___ywaD
# 2: RBAM_031250___ywaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1593
# Identity: 808/1593 (50.7%)
# Similarity: 808/1593 (50.7%)
# Gaps: 513/1593 (32.2%)
# Score: 1818.0
#
#
#=======================================
BSNT_05883___ 1 ------------------------ATGAAAAAGCTTTTGACTGTAATGAC 26
|||||| ||||.|
RBAM_031250__ 1 GTGTTAATAAGAGGAGGGATTATGATGAAA----TTTTCA---------- 36
BSNT_05883___ 27 GATGGCTGTTTTAACTGCCGGCACACTGCTCTTGCCGGCACAGAGTGTCA 76
|||| ||.|.|| |.|.| ||.|.||| ||.||||
RBAM_031250__ 37 ---------TTTA--TGTCAGC-CGCGG----TGGCAGCA---AGCGTCA 67
BSNT_05883___ 77 ---------CCCCTGCCGCACACGCTGTACAAATATCA-----AAT-AGC 111
|..||||||..| ||||||.|.||..||| |.| |||
RBAM_031250__ 68 TATGGGGCGCGTCTGCCGGGC-CGCTGTCCGAAACTCATGCTTATTCAGC 116
BSNT_05883___ 112 ---GAGCGCG-AGCTTCCATTCAAAGC----AAAGCATGCGTACTCTACC 153
||.|||| .|.|| ||..|.|| .|.|||| .|.|| ||.
RBAM_031250__ 117 CGTGACCGCGCCGGTT---TTTGATGCTGATGAGGCAT-TGGAC---ACG 159
BSNT_05883___ 154 ATTTCTCAGCTAAGTGAAGCAATCGG-CCCCAGAATAGCCGGAACTGCAG 202
||...|.|.||.||||||.|.||||| ||.|.|.| |.||||||||||
RBAM_031250__ 160 ATGCATGATCTGAGTGAAACCATCGGACCGCGGGA-AACCGGAACTGC-- 206
BSNT_05883___ 203 CTGAAA-AAAAGAGTGC---------CCTATTG-ATCGCC---------- 231
|||| |||||...|| |.|||.| ||||||
RBAM_031250__ 207 --GAAAGAAAAGGAAGCGGCTGAATACATATCGAATCGCCTGCGGGCTCA 254
BSNT_05883___ 232 ----------------------TCAT---CAATGAGAAAATTAAAGCTTG 256
|||| ||.||| ||||.|| |||
RBAM_031250__ 255 GGGCGCCAGTGTCAAAGTACAGTCATTTCCATTGA-AAAAGTA---CTT- 299
BSNT_05883___ 257 ATGTGAAGGTTCAACGATTCGACATTCCTGACCGGCTTGAGGGAACACTG 306
|..||||||| |
RBAM_031250__ 300 ---TTCAGGTTCA------------------------------------G 310
BSNT_05883___ 307 TCTTCAGCAGGACGCGAT-----ATTCTTCTCCAAGCGGCGTCCGGCTCA 351
|| .||||.||| ||| |||| |.|| ||| ||||.
RBAM_031250__ 311 TC-ACAGCGGGA---GATCATGAATTC---------CCGC-TCC-GCTCC 345
BSNT_05883___ 352 GC-------TCCGACTGAGGAACAAGGGCTGACGGCCCCGCTTTACAAT- 393
|| |||| |||..|||.|||.|||| |.|||
RBAM_031250__ 346 GCTGATCAATCCG-CTGTTGAAAAAGAGCTG-------------AGAATT 381
BSNT_05883___ 394 ----GCGGGATT--------GGGCT----ATCAAAAGGACTTTACCGC-- 425
|.|||||| .|||| |||| |||
RBAM_031250__ 382 GAGGGAGGGATTTTTGACGGCGGCTGCGGATCA------------CGCGA 419
BSNT_05883___ 426 TGAC---------GCCAAGGGCAAAATCGCTTTAATTTCCAGAGGAGA-- 464
|||| |||||.||.||.||.||..|.||...|..||||.|
RBAM_031250__ 420 TGACGTAACAGGAGCCAAAGGAAAGATTGCAGTGATACGCGAAGGAAAGA 469
BSNT_05883___ 465 --CCTGACTTATTACGAGAAAG-CCAAAAATGCCGAAGCCGCCGGAGCAA 511
||.| ||.|...|||| .||||.||||||||...||.|||||.|
RBAM_031250__ 470 TCCCCG-----TTTCTCAAAAGATCAAACATGCCGAACAAGCGGGAGCCA 514
BSNT_05883___ 512 AAGCTGTCATCATTTATAA-CA-ACAAAGAAAGC-CTCGTGCC-TATGAC 557
||||.|||||.|||||||| || ||||..|||.| ||| ||| |..|.|
RBAM_031250__ 515 AAGCAGTCATTATTTATAATCAGACAACAAAACCGCTC--GCCGTCCGTC 562
BSNT_05883___ 558 GCCAAACCTGTCGGGAAATAAAG---TCGGCATTCCGGTCGTC-GGCATT 603
..||.||| .|||||| ||...||.|||| ||.| ||.||.
RBAM_031250__ 563 CGCATACC--------GATAAAGGAATCACGATACCGG-CGGCGGGTATG 603
BSNT_05883___ 604 AAGAAAGAAGACGGCGAAGCACTTACCCAGCA--AAAAGAAGCCA--CCT 649
||.|||||||||||.|||||||| .|.||| |||||.||.|| |.|
RBAM_031250__ 604 AAAAAAGAAGACGGTGAAGCACT---GCTGCAGGAAAAGCAGGCAGTCAT 650
BSNT_05883___ 650 TAAAACTAAAAGC-ATTCACAAACCAAACCTCTCAGAACATCATCGGAAT 698
|.||..|||||.| || |.|||||..|||||.||.||.||.||.||
RBAM_031250__ 651 TCAATTTAAAAACTAT--AAAAACCGCACCTCACAAAATATTATAGG--- 695
BSNT_05883___ 699 TAAAAAAC---CAAAGAACATCA----AAC-------ATCCAGACATTGT 734
||| |||||..|..|| ||| ||.|.||.|||.|
RBAM_031250__ 696 -----AACGCGCAAAGCGCCACAGGCCAACTCTTCTGATGCTGATATTAT 740
BSNT_05883___ 735 GTACGTGACGGCCCATTACGACAGTGTTCCTTTTTCA---------CCCG 775
.||.||.||.||.|||||.|||||.|| | ||||
RBAM_031250__ 741 TTATGTCACAGCGCATTATGACAGCGT---------AAAAGGCGCGCCCG 781
BSNT_05883___ 776 GAGCAAATGACAACGGCTCAGGAACCTCTGTTATGCTGGAGATGGCGCGT 825
||||..||||.||||.||||||.||.||||...|.|||||.|
RBAM_031250__ 782 GAGCGGATGATAACGCCTCAGGCACATCTGCCGTTCTGGAAA-------- 823
BSNT_05883___ 826 GTC---------TTAAAAAGCGTTCCATCTGATAAAGAAATCCGCTTTAT 866
|| ||.|.|..|.|.||....||.|||||.|||||||||||
RBAM_031250__ 824 -TCAGCAAACAATTGACACACATACCGAAAGACAAAGAGATCCGCTTTAT 872
BSNT_05883___ 867 CGCT-TTCGGCGCCGAAGAGCT-CGGCCTGCTCGGCTCCTCTCACTATGT 914
| || |||||.||.|||||..| .||.|||| .||.||.|||.|.||.||
RBAM_031250__ 873 C-CTGTTCGGTGCAGAAGAATTATGGTCTGC-GGGTTCATCTTATTACGT 920
BSNT_05883___ 915 -AGATCATCTATCGGAAAAAGAGCTGAAACGA------AGCGAAGTGAAC 957
||..|| ||..||.|.|| ||||| || |||.|.|..||.
RBAM_031250__ 921 CAGTACA-CTCACGAACAA-----TGAAA-GAAAGCACAGCCAGGCCAAT 963
BSNT_05883___ 958 TTCAACTTAGATATGGTAGGCACAAGCTGGGAAAAAGCGTCTGAGCTGTA 1007
||.||....||||||.|.|..||...|||||||.|||||..|.|..|||.
RBAM_031250__ 964 TTTAATGCCGATATGATTGCGACTGACTGGGAAGAAGCGAGTCAAATGTG 1013
BSNT_05883___ 1008 TGTCA--ACACATTGGACGGCCAATCTAAC------------TATGTTTG 1043
||||| ||.|.| ||||||.|....||| ||||.|
RBAM_031250__ 1014 TGTCACGACTCCT--GACGGCAAGGAAAACCCGAGCGTCCGGTATGCT-- 1059
BSNT_05883___ 1044 GGAATCCAGCCATACAGCTGCTGAAAAA-----ATTGGGTTTGACAGCCT 1088
||| |.|||.||||||||| .|||| |.| ||||.
RBAM_031250__ 1060 -GAA---------AAAGCCGCTGAAAAATCCCGCTTGG---TCA-AGCCA 1095
BSNT_05883___ 1089 GTCTCTGACACAGGGAGGATCATCTGATCATGTGCCATTCCACGAAGCCG 1138
..| ||||..|||...||.|..||.||.|||||..|.||..|.|||||.|
RBAM_031250__ 1096 AAC-CTGATTCAGCTCGGTTACTCAGACCATGTCTCTTTTTATGAAGCAG 1144
BSNT_05883___ 1139 GCATTGATTCC----GCCAACTTTATTTGG-GGAGACCCG-GAAACAGAA 1182
| |||||| ||.||||..|||||| ..||.|||| .|.||||.|
RBAM_031250__ 1145 G----GATTCCGTCGGCTAACTGGATTTGGCTCAGCCCCGATACACAGGA 1190
BSNT_05883___ 1183 GAAGTTGAGCCGTGGTATCATACCCCCGAAGACTCG-----ATCGAACAT 1227
|..| |.|||.||||||||.||| .|||.| | ||..||||.
RBAM_031250__ 1191 GCCG--GGGCCCTGGTATCACACC----GAGAAT-GATAATATGAAACAC 1233
BSNT_05883___ 1228 ATCAGCAAAGAACGCCTCCAGCAAGCAGGCGAT--CTTGTGACAGCCGCA 1275
||||||||||||.|..|..||.|||| |.||| ||.||..|.||.||.
RBAM_031250__ 1234 ATCAGCAAAGAAAGATTAGAGAAAGC--GGGATCACTCGTTTCCGCGGCT 1281
BSNT_05883___ 1276 GTCTATGAGGCTGTGAAAAGAGAGAAGAAACCAAAAACCATTAAGAAACA 1325
||...||||||.||||| ||||.||
RBAM_031250__ 1282 GTAACTGAGGCAGTGAA-----AGAATAA--------------------- 1305
BSNT_05883___ 1326 AATGAAGGCCAAAGCAACTGACATTTTTGAAGATATCAAATAA 1368
RBAM_031250__ 1305 ------------------------------------------- 1305
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