Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04490 and RBAM_031240

See Amino acid alignment / Visit BSNT_04490 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:00
# Commandline: needle
#    -asequence dna-align/BSNT_04490___ytcA.1.9828.seq
#    -bsequence dna-align/RBAM_031240.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04490___ytcA-RBAM_031240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04490___ytcA-RBAM_031240.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04490___ytcA
# 2: RBAM_031240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1668
# Identity:     742/1668 (44.5%)
# Similarity:   742/1668 (44.5%)
# Gaps:         714/1668 (42.8%)
# Score: 1215.0
# 
#
#=======================================

BSNT_04490___      0 --------------------------------------------------      0
                                                                       
RBAM_031240        1 ATGAATACTGTCACAAAAGAAGCCAGCAACCTTGGTCAAAAACGGCTGTT     50

BSNT_04490___      1 --------ATGAAA-----------ATTTGT----GTGGTTGGCGCCGGG     27
                             .|||||           | ||||    |||.|.|||...||.
RBAM_031240       51 ACATCTGATTGAAACGAAGCAGGCGA-TTGTAGGCGTGTTAGGCATGGGA     99

BSNT_04490___     28 TATGTCGG-TTTAACCCTATCAGCGGCACTGGCATCCATCGGACATGACA     76
                     |||||.|| |||   |||.|    .||.||||.||...|||   || |.|
RBAM_031240      100 TATGTGGGATTT---CCTCT----TGCGCTGGAATGTGTCG---AT-AAA    138

BSNT_04490___     77 TGATATGCACAGACAA---------AGACGTCAAAAAAATCGGGCAGCTG    117
                     .|||        ||||         |..||.||||||       ||| ||
RBAM_031240      139 GGAT--------ACAATGTTATCGGATTCGACAAAAA-------CAG-TG    172

BSNT_04490___    118 AAAAAAGGAGTCATTCCCTT-TTATGAGCCTGG--GCTTTCAGATGCAAT    164
                       ||||||     ||.|||| |||...||| ||  ||...||.||.|||.
RBAM_031240      173 --AAAAGG-----TTTCCTTGTTAGCCGCC-GGAAGCAGCCATATTCAAG    214

BSNT_04490___    165 ACTTCGTTG-CGGCAATCT---CTCG--TTTTC------------TTCTG    196
                     |..|.|..| ||.||..||   ||||  |||.|            |||  
RBAM_031240      215 ATATAGAGGACGACAGACTGAACTCGGCTTTACAAACAAAACGCTTTC--    262

BSNT_04490___    197 AAGTGAAATCGAGCATGGAGGA-ATGTCCCGTTATTTTTATC-------G    238
                          ||||| |||   |..|| |||||.|       |.|||       |
RBAM_031240      263 -----AAATC-AGC---GCCGACATGTCGC-------TCATCCAAAAATG    296

BSNT_04490___    239 CAGTCGGAACCCCGCCGCGTTCGGACGGATCA--GCTGATA-------CG    279
                     |                      |||  ||||  | |||||       ||
RBAM_031240      297 C----------------------GAC--ATCATTG-TGATATGTGTGCCG    321

BSNT_04490___    280 AAAGCCCTGCAGTCCGTC------------ATCGGTGATTTAAGCGA---    314
                     |.|.|||||.|      |            |||...|||||||.|.|   
RBAM_031240      322 ACACCCCTGAA------CAAAAAAGACAAGATCCCCGATTTAACCTACAT    365

BSNT_04490___    315 -GTCAATCC------------GATCGTATA---AA---ACCAT-------    338
                      |.||.|.|            |||||..||   ||   |.|||       
RBAM_031240      366 CGACAGTGCAGTTGACAGCATGATCGCTTATGGAAGGCAGCATCAGCTTT    415

BSNT_04490___    339 ---TATTACGAAAAGCA----CTGTTCCGCCCGGGACAAATGAAAACATA    381
                        |.|||  .||||||    ||.|    |||||.|| ||.|||||    
RBAM_031240      416 TAATTTTA--GAAAGCACCACCTAT----CCCGGAAC-AACGAAAA----    454

BSNT_04490___    382 GCAAAACAGCTGATTGCCTCCGGAGTGTC--------------------T    411
                       ||||     |||||||..|.||.||.|                    |
RBAM_031240      455 --AAAA-----GATTGCCGACAGAATGGCATCAAGCCGCGGCATGAAAAT    497

BSNT_04490___    412 AGAAAC---CTCTTTAATGTCGTATCCAATCCGG--AGTTTC--TGCGGG    454
                     ||.|||   ||.|||.|.|.|.|||.|  |||||  ||..||  |.||||
RBAM_031240      498 AGGAACAGACTTTTTTACGGCTTATTC--TCCGGAAAGAATCGATCCGGG    545

BSNT_04490___    455 ---AAGGCAATGCCTTATATGACATGCTGCA-----TCCTGACAAAACAG    496
                        .|||||       |||||  |.|.|.||     ||||      |.||
RBAM_031240      546 CAACAGGCA-------ATATG--AAGTTTCAGATATTCCT------AAAG    580

BSNT_04490___    497 TCATCGGTGTTCAGGA-------AGA-------AGA-------TCA-CGT    524
                     |..||||     .|||       |||       |||       ||| |||
RBAM_031240      581 TAGTCGG-----CGGAACCACACAGACTTGCACAGAACTTGCCTCAGCGT    625

BSNT_04490___    525 AT--CGGCAGCCATCGTCAAATCCATTTACAAACACATTGATACCCCTTT    572
                     .|  |.||| ||||.|          ||||||  .||||.|   |||..|
RBAM_031240      626 TTTACAGCA-CCATTG----------TTACAA--GCATTCA---CCCGGT    659

BSNT_04490___    573 TATCGTTAC---AAGCTTAGCGGGAGCAGAGCTGATCAAA----TATGCC    615
                     .| |.|.||   |||  ||||.|.|  |.||||    |||    || |..
RBAM_031240      660 GA-CCTCACCCGAAG--TAGCTGAA--ACAGCT----AAACTCCTA-GAG    699

BSNT_04490___    616 AACAATT-TCTTTTTAGCGGCCAAAATTTCGTTTATTAACGAAATGGC--    662
                     ||.|.|| ||.||.|    |.|||.||..|..||||.||.||||||||  
RBAM_031240      700 AATACTTATCGTTAT----GTCAATATAGCTCTTATCAATGAAATGGCGC    745

BSNT_04490___    663 -------CCG---------------CATATGTGAAGCCTATC--------    682
                            |||               .|||||.||||.| |||        
RBAM_031240      746 TTAATTGCCGTGAACTTGATATTGATATATGGGAAGTC-ATCTGCGCGGC    794

BSNT_04490___    683 -------AA-----TCAGATATCTCAGATATTTCCCGCGCTATCGGTCTA    720
                            ||     ||.|.|.||..|.||.|.|||||.||          
RBAM_031240      795 GGACACGAAGCCGTTCGGCTTTCAAAAATTTATCCCGGGC----------    834

BSNT_04490___    721 GACCCAAGGA-TCGGGAAGCACTTTTTGCAGGCAGGCATCGGATACGGA-    768
                       |||  ||| ||||              ||||   |||.|.||.|.|| 
RBAM_031240      835 --CCC--GGAGTCGG--------------AGGC---CATTGTATCCCGAT    863

BSNT_04490___    769 -GGCTCTTGTT--TTCCAAAGGATCTGC---------AGGCGCTGCA---    803
                      |...|||.||  |||.||.||||| ||         ||| ||||||   
RBAM_031240      864 TGATCCTTTTTACTTCAAATGGATC-GCGAATGAAAAAGG-GCTGCAGAC    911

BSNT_04490___    804 ------ATTTGCT---GCCCAGGAAA--AA----AACACGGAGACCTTCC    838
                           |.|||.|   ||..|.||||  ||    ||||.|..||  ||.|
RBAM_031240      912 AAAATTAATTGATCTCGCGGACGAAATCAATTCCAACATGCCGA--TTTC    959

BSNT_04490___    839 TGCTC-CGGGCCGTGCAGCACATTAATGACACCCAGCTTGGCCTGTATAT    887
                     || || |.|.|..|||      ||  |||.||      ||||..|     
RBAM_031240      960 TG-TCTCTGACTATGC------TT--TGAAAC------TGGCGGG-----    989

BSNT_04490___    888 CAA--AAAAATACAGTCATTCTTCGAAACACTTCAAGGCAAGAA-AGCGG    934
                     |||  |.||||.||| |||           |||      ||.|| ||.||
RBAM_031240      990 CAAAGACAAATGCAG-CAT-----------CTT------AATAATAGGGG   1021

BSNT_04490___    935 CTGTACTCGGCATTTCCTT-CAAACCGAATACTGATGACATCCG---GAA    980
                     |.|             ||| .|||...|||||..|||||  |||   |||
RBAM_031240     1022 CAG-------------CTTATAAAAAAAATACAAATGAC--CCGCGTGAA   1056

BSNT_04490___    981 TTCTCAGGCTGTCAGACTGATGGAAAGGCTGGCGGAGCTGGGATG-----   1025
                     |.|||||..|.|..|| |.||||||....||..|||...||||||     
RBAM_031240     1057 TCCTCAGTGTTTACGA-TAATGGAAGAATTGATGGACAAGGGATGCGCGA   1105

BSNT_04490___   1026 -TGATGTTCATGCA------TAT------GATC-----------CTGAAG   1051
                      ||||..||||| |      |||      ||||           |.||||
RBAM_031240     1106 TTGATTATCATG-ATCCGTTTATCAGCGAGATCCGCTTGAATGACGGAAG   1154

BSNT_04490___   1052 CTGTA------------CTTCC-----AGAACATTTGCGGCAA-CATGTA   1083
                     |.|.|            |||.|     ||||||..|    ||| || |||
RBAM_031240     1155 CCGCAAACAATCTGTCCCTTTCACAAAAGAACAAAT----CAATCA-GTA   1199

BSNT_04490___   1084 --AC----TCAGCATTC-TCAAGCTTTTGATGCGATCGAAGAGAGTGACT   1126
                       ||    |||.||||| |..||.|...||||..|||||..|.||     
RBAM_031240     1200 CGACGTCATCATCATTCATACAGATCACGATGTCATCGACTACAG-----   1244

BSNT_04490___   1127 TTTTATTTTTGGCGACAGAATGGC---CTGAGTTTTTAGCGTTTGATTGG   1173
                        ||||||    || ||.|||.|   |.||    |||.| |||||    
RBAM_031240     1245 ---TATTTT----GA-AGGATGTCTCACCGA----TTATC-TTTGA----   1277

BSNT_04490___   1174 AAAAAGGCTGCAGATATCATGAAAGGGCGTCTTGTGATTGACGGGCGCAA   1223
                               ||     ||.||||        ||| ||        ||||
RBAM_031240     1278 ----------CA-----CAAGAAA--------TGT-AT--------GCAA   1295

BSNT_04490___   1224 CGTACTAAAAAAAGAACTGATCGAGGCTTGCGGCCTGATCTGTACGGGAG   1273
                     .|     |||||..|.|    |||...||||               .|||
RBAM_031240     1296 GG-----AAAAATCAGC----CGACAATTGC---------------AGAG   1321

BSNT_04490___   1274 TTGGCCGTC-CATGA---   1287
                     ||    ||| |.|.|   
RBAM_031240     1322 TT----GTCACTTTATAG   1335


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