Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04490 and RBAM_031240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:00
# Commandline: needle
# -asequence dna-align/BSNT_04490___ytcA.1.9828.seq
# -bsequence dna-align/RBAM_031240.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04490___ytcA-RBAM_031240.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04490___ytcA-RBAM_031240.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04490___ytcA
# 2: RBAM_031240
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1668
# Identity: 742/1668 (44.5%)
# Similarity: 742/1668 (44.5%)
# Gaps: 714/1668 (42.8%)
# Score: 1215.0
#
#
#=======================================
BSNT_04490___ 0 -------------------------------------------------- 0
RBAM_031240 1 ATGAATACTGTCACAAAAGAAGCCAGCAACCTTGGTCAAAAACGGCTGTT 50
BSNT_04490___ 1 --------ATGAAA-----------ATTTGT----GTGGTTGGCGCCGGG 27
.||||| | |||| |||.|.|||...||.
RBAM_031240 51 ACATCTGATTGAAACGAAGCAGGCGA-TTGTAGGCGTGTTAGGCATGGGA 99
BSNT_04490___ 28 TATGTCGG-TTTAACCCTATCAGCGGCACTGGCATCCATCGGACATGACA 76
|||||.|| ||| |||.| .||.||||.||...||| || |.|
RBAM_031240 100 TATGTGGGATTT---CCTCT----TGCGCTGGAATGTGTCG---AT-AAA 138
BSNT_04490___ 77 TGATATGCACAGACAA---------AGACGTCAAAAAAATCGGGCAGCTG 117
.||| |||| |..||.|||||| ||| ||
RBAM_031240 139 GGAT--------ACAATGTTATCGGATTCGACAAAAA-------CAG-TG 172
BSNT_04490___ 118 AAAAAAGGAGTCATTCCCTT-TTATGAGCCTGG--GCTTTCAGATGCAAT 164
|||||| ||.|||| |||...||| || ||...||.||.|||.
RBAM_031240 173 --AAAAGG-----TTTCCTTGTTAGCCGCC-GGAAGCAGCCATATTCAAG 214
BSNT_04490___ 165 ACTTCGTTG-CGGCAATCT---CTCG--TTTTC------------TTCTG 196
|..|.|..| ||.||..|| |||| |||.| |||
RBAM_031240 215 ATATAGAGGACGACAGACTGAACTCGGCTTTACAAACAAAACGCTTTC-- 262
BSNT_04490___ 197 AAGTGAAATCGAGCATGGAGGA-ATGTCCCGTTATTTTTATC-------G 238
||||| ||| |..|| |||||.| |.||| |
RBAM_031240 263 -----AAATC-AGC---GCCGACATGTCGC-------TCATCCAAAAATG 296
BSNT_04490___ 239 CAGTCGGAACCCCGCCGCGTTCGGACGGATCA--GCTGATA-------CG 279
| ||| |||| | ||||| ||
RBAM_031240 297 C----------------------GAC--ATCATTG-TGATATGTGTGCCG 321
BSNT_04490___ 280 AAAGCCCTGCAGTCCGTC------------ATCGGTGATTTAAGCGA--- 314
|.|.|||||.| | |||...|||||||.|.|
RBAM_031240 322 ACACCCCTGAA------CAAAAAAGACAAGATCCCCGATTTAACCTACAT 365
BSNT_04490___ 315 -GTCAATCC------------GATCGTATA---AA---ACCAT------- 338
|.||.|.| |||||..|| || |.|||
RBAM_031240 366 CGACAGTGCAGTTGACAGCATGATCGCTTATGGAAGGCAGCATCAGCTTT 415
BSNT_04490___ 339 ---TATTACGAAAAGCA----CTGTTCCGCCCGGGACAAATGAAAACATA 381
|.||| .|||||| ||.| |||||.|| ||.|||||
RBAM_031240 416 TAATTTTA--GAAAGCACCACCTAT----CCCGGAAC-AACGAAAA---- 454
BSNT_04490___ 382 GCAAAACAGCTGATTGCCTCCGGAGTGTC--------------------T 411
|||| |||||||..|.||.||.| |
RBAM_031240 455 --AAAA-----GATTGCCGACAGAATGGCATCAAGCCGCGGCATGAAAAT 497
BSNT_04490___ 412 AGAAAC---CTCTTTAATGTCGTATCCAATCCGG--AGTTTC--TGCGGG 454
||.||| ||.|||.|.|.|.|||.| ||||| ||..|| |.||||
RBAM_031240 498 AGGAACAGACTTTTTTACGGCTTATTC--TCCGGAAAGAATCGATCCGGG 545
BSNT_04490___ 455 ---AAGGCAATGCCTTATATGACATGCTGCA-----TCCTGACAAAACAG 496
.||||| ||||| |.|.|.|| |||| |.||
RBAM_031240 546 CAACAGGCA-------ATATG--AAGTTTCAGATATTCCT------AAAG 580
BSNT_04490___ 497 TCATCGGTGTTCAGGA-------AGA-------AGA-------TCA-CGT 524
|..|||| .||| ||| ||| ||| |||
RBAM_031240 581 TAGTCGG-----CGGAACCACACAGACTTGCACAGAACTTGCCTCAGCGT 625
BSNT_04490___ 525 AT--CGGCAGCCATCGTCAAATCCATTTACAAACACATTGATACCCCTTT 572
.| |.||| ||||.| |||||| .||||.| |||..|
RBAM_031240 626 TTTACAGCA-CCATTG----------TTACAA--GCATTCA---CCCGGT 659
BSNT_04490___ 573 TATCGTTAC---AAGCTTAGCGGGAGCAGAGCTGATCAAA----TATGCC 615
.| |.|.|| ||| ||||.|.| |.|||| ||| || |..
RBAM_031240 660 GA-CCTCACCCGAAG--TAGCTGAA--ACAGCT----AAACTCCTA-GAG 699
BSNT_04490___ 616 AACAATT-TCTTTTTAGCGGCCAAAATTTCGTTTATTAACGAAATGGC-- 662
||.|.|| ||.||.| |.|||.||..|..||||.||.||||||||
RBAM_031240 700 AATACTTATCGTTAT----GTCAATATAGCTCTTATCAATGAAATGGCGC 745
BSNT_04490___ 663 -------CCG---------------CATATGTGAAGCCTATC-------- 682
||| .|||||.||||.| |||
RBAM_031240 746 TTAATTGCCGTGAACTTGATATTGATATATGGGAAGTC-ATCTGCGCGGC 794
BSNT_04490___ 683 -------AA-----TCAGATATCTCAGATATTTCCCGCGCTATCGGTCTA 720
|| ||.|.|.||..|.||.|.|||||.||
RBAM_031240 795 GGACACGAAGCCGTTCGGCTTTCAAAAATTTATCCCGGGC---------- 834
BSNT_04490___ 721 GACCCAAGGA-TCGGGAAGCACTTTTTGCAGGCAGGCATCGGATACGGA- 768
||| ||| |||| |||| |||.|.||.|.||
RBAM_031240 835 --CCC--GGAGTCGG--------------AGGC---CATTGTATCCCGAT 863
BSNT_04490___ 769 -GGCTCTTGTT--TTCCAAAGGATCTGC---------AGGCGCTGCA--- 803
|...|||.|| |||.||.||||| || ||| ||||||
RBAM_031240 864 TGATCCTTTTTACTTCAAATGGATC-GCGAATGAAAAAGG-GCTGCAGAC 911
BSNT_04490___ 804 ------ATTTGCT---GCCCAGGAAA--AA----AACACGGAGACCTTCC 838
|.|||.| ||..|.|||| || ||||.|..|| ||.|
RBAM_031240 912 AAAATTAATTGATCTCGCGGACGAAATCAATTCCAACATGCCGA--TTTC 959
BSNT_04490___ 839 TGCTC-CGGGCCGTGCAGCACATTAATGACACCCAGCTTGGCCTGTATAT 887
|| || |.|.|..||| || |||.|| ||||..|
RBAM_031240 960 TG-TCTCTGACTATGC------TT--TGAAAC------TGGCGGG----- 989
BSNT_04490___ 888 CAA--AAAAATACAGTCATTCTTCGAAACACTTCAAGGCAAGAA-AGCGG 934
||| |.||||.||| ||| ||| ||.|| ||.||
RBAM_031240 990 CAAAGACAAATGCAG-CAT-----------CTT------AATAATAGGGG 1021
BSNT_04490___ 935 CTGTACTCGGCATTTCCTT-CAAACCGAATACTGATGACATCCG---GAA 980
|.| ||| .|||...|||||..||||| ||| |||
RBAM_031240 1022 CAG-------------CTTATAAAAAAAATACAAATGAC--CCGCGTGAA 1056
BSNT_04490___ 981 TTCTCAGGCTGTCAGACTGATGGAAAGGCTGGCGGAGCTGGGATG----- 1025
|.|||||..|.|..|| |.||||||....||..|||...||||||
RBAM_031240 1057 TCCTCAGTGTTTACGA-TAATGGAAGAATTGATGGACAAGGGATGCGCGA 1105
BSNT_04490___ 1026 -TGATGTTCATGCA------TAT------GATC-----------CTGAAG 1051
||||..||||| | ||| |||| |.||||
RBAM_031240 1106 TTGATTATCATG-ATCCGTTTATCAGCGAGATCCGCTTGAATGACGGAAG 1154
BSNT_04490___ 1052 CTGTA------------CTTCC-----AGAACATTTGCGGCAA-CATGTA 1083
|.|.| |||.| ||||||..| ||| || |||
RBAM_031240 1155 CCGCAAACAATCTGTCCCTTTCACAAAAGAACAAAT----CAATCA-GTA 1199
BSNT_04490___ 1084 --AC----TCAGCATTC-TCAAGCTTTTGATGCGATCGAAGAGAGTGACT 1126
|| |||.||||| |..||.|...||||..|||||..|.||
RBAM_031240 1200 CGACGTCATCATCATTCATACAGATCACGATGTCATCGACTACAG----- 1244
BSNT_04490___ 1127 TTTTATTTTTGGCGACAGAATGGC---CTGAGTTTTTAGCGTTTGATTGG 1173
|||||| || ||.|||.| |.|| |||.| |||||
RBAM_031240 1245 ---TATTTT----GA-AGGATGTCTCACCGA----TTATC-TTTGA---- 1277
BSNT_04490___ 1174 AAAAAGGCTGCAGATATCATGAAAGGGCGTCTTGTGATTGACGGGCGCAA 1223
|| ||.|||| ||| || ||||
RBAM_031240 1278 ----------CA-----CAAGAAA--------TGT-AT--------GCAA 1295
BSNT_04490___ 1224 CGTACTAAAAAAAGAACTGATCGAGGCTTGCGGCCTGATCTGTACGGGAG 1273
.| |||||..|.| |||...|||| .|||
RBAM_031240 1296 GG-----AAAAATCAGC----CGACAATTGC---------------AGAG 1321
BSNT_04490___ 1274 TTGGCCGTC-CATGA--- 1287
|| ||| |.|.|
RBAM_031240 1322 TT----GTCACTTTATAG 1335
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