Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04492 and RBAM_031220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:00
# Commandline: needle
# -asequence dna-align/BSNT_04492___ytcB.1.9828.seq
# -bsequence dna-align/RBAM_031220.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04492___ytcB-RBAM_031220.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04492___ytcB-RBAM_031220.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04492___ytcB
# 2: RBAM_031220
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1168
# Identity: 536/1168 (45.9%)
# Similarity: 536/1168 (45.9%)
# Gaps: 455/1168 (39.0%)
# Score: 953.0
#
#
#=======================================
BSNT_04492___ 1 ATGAAA-ATACT-CG-TCACAGGAGCAGCGGGCTTTATCGGCTCCCACCT 47
|||||| |||.| || |.|..||||.|||.||.||||||||
RBAM_031220 1 ATGAAACATATTGCGATTATCGGAGGAGCCGGTTTTATCGG--------- 41
BSNT_04492___ 48 CTGCGAA------GAATTACTAAAAGATAAGAAACATAACGTTATTGGAA 91
..||||| |.||||.||.|.|||| ||.|||||
RBAM_031220 42 AAGCGAACTGGCGGCATTATTACAGGATA--------AAGGTTAT----- 78
BSNT_04492___ 92 TCGATGACTTTATCGGTCCTACTCCATTTTCCTTGAAATTAAAAAACCTT 141
.||.||| ||.||| .|.|||
RBAM_031220 79 -------------------CACACCA---TCATTG-------CAGACC-- 97
BSNT_04492___ 142 AAAAA----CCTGCT----GCA-AGAAAAGCGATTTACGTTCATAAAGGA 182
|||| ||.||| .|| .|||.|.|| |..||.|||
RBAM_031220 98 -AAAAGGAGCCGGCTTTTGACACTGAATACCG---------CCAAACGGA 137
BSNT_04492___ 183 AAATCTGCTGACAGCGGATCTTGC-TCCCTTACTG-GAA---------GG 221
.|.||| |||| |||| | ||||| |.| ||| ||
RBAM_031220 138 TATTCT--TGAC--CGGA-----CGTCCCT--CCGCGAATCATTGCGGGG 176
BSNT_04492___ 222 AGTGGACGTCATCTTTCATTTGGCGGCCATACCGGGT-------GTCCGC 264
||.|||.|...|..|.|||||||||||.|| ||| |.|.||
RBAM_031220 177 AGCGGATGCGGTTGTCCATTTGGCGGCAAT----GGTCGGAGTGGACAGC 222
BSNT_04492___ 265 TCAAGCTGGGGCAATCATTTTCACCCATATGCCGCACAT-------AATA 307
| ||.|..|||||.| |.|.|.|| .||| |||.
RBAM_031220 223 T---GCCGAAGCAATGA---------AGAAGACG-TCATACGGGTCAATT 259
BSNT_04492___ 308 TCCAAG---CGCTCCAAAGGCTCCTCGAGGCGTGCCGGGA---------- 344
|..||| || ..|||.|...|| ||||..|||.|.||
RBAM_031220 260 TTGAAGGAACG--AAAAACGTAACT-GAGGTATGCGGTGAATTGGGAATC 306
BSNT_04492___ 345 ---ACA-TTCTATTCAAA---CGTTC----GTCTTTG--CATCCACC--- 378
||| ||||.|||..| .|||| ||.||.| .||.||||
RBAM_031220 307 AGCACACTTCTTTTCTCATCGAGTTCAGAAGTGTTCGGAGATTCACCGGA 356
BSNT_04492___ 379 TCTTCCGTCTATGGCGAAAAACAAGGAAAAGTCAGTGAAAACACGTCGCT 428
|.||||.|.||..|.||.||.|| |||| |||
RBAM_031220 357 TTTTCCTTATACCGAGACAAGCA-------------GAAA-------GCT 386
BSNT_04492___ 429 TTCTCCTTTATCTCCGTACGGGGTAACAAA---GCTTACGGGAGAAAAGC 475
|||| ||| ||||||| |||||||
RBAM_031220 387 ------------TCCG-----------AAATCGGCTTACG---GAAAAGC 410
BSNT_04492___ 476 TTTGCCATGTGTATCAA-CAGAG-----TTT--------TGGCATTCC-- 509
|.|..|| ||| ||||| ||| .||| ||||
RBAM_031220 411 ----CAAACTG---CAATCAGAGGAATATTTGAGAGAACAGGC-TTCCGA 452
BSNT_04492___ 510 ---AATTGTGATTC------TCCGTTTTTTTACCGTATACGGGCCAAGAC 550
|.||...|||| ||||.|..||||..|||||||||||.|.||
RBAM_031220 453 CGAACTTCATATTCGGGTCGTCCGGTACTTTAATGTATACGGGCCGAAAC 502
BSNT_04492___ 551 AGCGGCCGGATAT-----------GGCTTTTCACC------------GGC 577
||||...||||.| .|.||||||.| |||
RBAM_031220 503 AGCGCGAGGATTTTGTCATCAATAAGTTTTTCAGCCTGGCCGAGAATGGC 552
BSNT_04492___ 578 TCATTAAGCAGCACCTT--------CAGC------AAAAGCCGCTTACCA 613
|| |.|||.||..||| |.|| |.|.||.|||| ||
RBAM_031220 553 TC--TGAGCTGCCTCTTTACGGGGACGGCGGACAAATACGCTGCTT--CA 598
BSNT_04492___ 614 TCT---TCGGTGATGGGCAGCAGTCAAGAGATTTCACTTATATC------ 654
.|| ||.||||| |.| ||||...|| ||||||.||
RBAM_031220 599 GCTACATCAGTGAT----ATC-GTCACCGGA----ACTTATCTCGCTCTC 639
BSNT_04492___ 655 ------------GGCGACTGTGTCAAAGGCATCACCGCTGTTCTTGGGAA 692
|.||.||.|| |||.|.||| .|.|.|||||
RBAM_031220 640 ACTCATGAAGGAGCCGTCTTTG---AAGACTTCA------ATATCGGGAA 680
BSNT_04492___ 693 --ACC--CCGCCTTAT--------------TGG-TGAAACAGTAAATATC 723
||| ||| || ||| |||||.|||.|||
RBAM_031220 681 CGACCAGCCG----ATCACGATAAAAGAACTGGCTGAAAAAGTCAAT--- 723
BSNT_04492___ 724 GGCGGCGCAGAGCGTGC-CTCAGTCATA---AAGGTTGTCTCCCTCATT- 768
|||| |||||.||.| ||||.|..||..||..||
RBAM_031220 724 -------------GTGCTCTCAGGCAGAGAGAAGGATAACTATCTGTTTA 760
BSNT_04492___ 769 -----------GAGGATATTTCCGGC------AGAAAAGCAACACTGCAC 801
||.|| |||| .|||||| |||..|.|.
RBAM_031220 761 AAAAACTGGGCGAAGA------CGGCGTGAGGGGAAAAG--ACATCGAAA 802
BSNT_04492___ 802 TTTT----------CGGACAAAATAGCAGGGGAACCGCGCAACACG--TG 839
|||| |.|.|||...||.|||.||| ||| ||
RBAM_031220 803 TTTTTAAGCGGGCGCCGTCAATCGAGAAGGCGAA---------ACGTTTG 843
BSNT_04492___ 840 GGCGGATA--TTTCAAAAGCAAAACAGCTCTTGCATTATAATCCCGCCAC 887
..|||.|| .|.|.||||.||..| ||.|| .||..||...|.
RBAM_031220 844 CTCGGTTACGCTCCGAAAGTAAGTC------TGAAT--GAAGGCCTGGAG 885
BSNT_04492___ 888 ATCCTTAAAGGATGGCTTGACCAACGAAATCACCTATTTATCGTCGCTGT 937
|||.|.|||| .|||...||.|||.|||..|.|| ||.||.|
RBAM_031220 886 ATCATAAAAG------ATGAAAGACAAAAGCACAAACTT----TCACTTT 925
BSNT_04492___ 938 ----ATCAGGGGGAATAA 951
|
RBAM_031220 926 CCTAA------------- 930
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