Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01394 and RBAM_031160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:06
# Commandline: needle
# -asequence dna-align/BSNT_01394___yfiS.1.9828.seq
# -bsequence dna-align/RBAM_031160.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01394___yfiS-RBAM_031160.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01394___yfiS-RBAM_031160.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01394___yfiS
# 2: RBAM_031160
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1549
# Identity: 705/1549 (45.5%)
# Similarity: 705/1549 (45.5%)
# Gaps: 635/1549 (41.0%)
# Score: 1230.5
#
#
#=======================================
BSNT_01394___ 1 -------ATGGAA-------------AAACCGTTGTTTCGCAATCAAAAA 30
||.||| |||.|.|||.|..|| |.|
RBAM_031160 1 ATGACATATCGAACACCGAACTATGCAAAGCTTTGGTGTGC------ACA 44
BSNT_01394___ 31 GGACTGATGACACTGTTAGCCTCGCAAACCATTTCTTC--------ACTT 72
|| ||| ||||||| ||
RBAM_031160 45 GG-----------TGT---------------TTTCTTCAGCAGCGGAC-- 66
BSNT_01394___ 73 GGAGACTGGCTTCACATT--TTGGCC-------GTGCTAACATTAGCCGC 113
||.|.|||||| |||| |..||| |||||...|||..|||
RBAM_031160 67 GGGGTCTGGCT---CATTGCTCTGCCGCTGTTAGTGCTGGAATTGACCG- 112
BSNT_01394___ 114 TTTTCAGCTTCATGCT--TCTCCATTAGATATGTCGCTTTTAATGATGTC 161
.||||...||.|| ||..|.||| |..||||||..||..||
RBAM_031160 113 ---GCAGCAAAATTCTAGTCGGCGTTA------TTTCTTTTATCGAACTC 153
BSNT_01394___ 162 GTTTGCTTTGCC--TGTCATT----GTACTCGGACCTGTATCGGGT---C 202
| |||| ||.|||| ||.||.| ||||| |
RBAM_031160 154 G-------TGCCGTTGACATTTGGCGTGCTGG---------CGGGTCCAC 187
BSNT_01394___ 203 TGCTTGCCGACCGTTTTGACAGAAAAA---CGATCATGTTTCTGTCTGAA 249
||.||| .|||...|.|||||| |||||.|||.|.|| ||.|
RBAM_031160 188 TGATTG------ATTTATTCCGAAAAAAGTCGATCTTGTATTTG--TGCA 229
BSNT_01394___ 250 AT--CGGACGTGCCCTCACCGTTATCAGCTGCGTTTATGTCAGTGAGCTT 297
|| .||.||.|||..||...|.|||..|| ||.|.|| |||
RBAM_031160 230 ATACGGGTCGGGCCGCCATTATGATCCTCT-------TGGCGGT--GCT- 269
BSNT_01394___ 298 TGGCAGC--------TTTA-----CGTATTGCTATGCCTTCAGAGCTGT- 333
|||| |||| |||.|.|.|| ||| |.|.|||
RBAM_031160 270 ---CAGCGCGAACGATTTATTAACCGTGTGGATA-GCC----GGGGTGTG 311
BSNT_01394___ 334 ----TTTTCTTCACTTTTTTCACCTGCTAAAAACGGAAAGCTTAAGGAAT 379
||||.| ||.|.| |||| ||.|| |.||| .|
RBAM_031160 312 CGCCTTTTGT---CTATCT----CTGC---AATCG--ATGCT------GT 343
BSNT_01394___ 380 TGGCTCCGG---AA---GCACACATTCAGCAGGCTGTT--TCCGCCAGCA 421
|.||.|||| || ||...||||| .||||.| |||||.|.||
RBAM_031160 344 TTGCGCCGGCGAAAGTCGCGATCATTC----CGCTGCTCGTCCGCAAACA 389
BSNT_01394___ 422 GCATCATTGATAACAG----------TG--CAAAA--------------- 444
||||| ||||| ||| || |||.|
RBAM_031160 390 GCATC-TTGAT--CAGGCGACATCTCTGATCAATACGAGTGACTTGATCG 436
BSNT_01394___ 445 -----ATCTTCGGCCCTGCCC----TTG----GCGGCATGCTGATCGCTG 481
|||.|||| ||| ||||.||..||||.||.|
RBAM_031160 437 GACTCATCGTCGG--------AAAATTGATCAGCGGGATCATGATTGCGG 478
BSNT_01394___ 482 CTGTCTCTATAC---ATTCTGTTTTCTATATTAACGCCGGCGCCTTTCTT 528
||.| ||..|.| ||.||||||.|..|| ||||.|...||.|||.|.
RBAM_031160 479 CTAT-TCCGTTCGGGATGCTGTTTGCCCTA--AACGGCACTGCTTTTTTG 525
BSNT_01394___ 529 CTTTCCGCTGTCAT------------TTTGTTTTTC----CTCCCCAAAG 562
.|.||.|| |.||| ||.||.|||| |..|||||.|
RBAM_031160 526 ATCTCTGC-GGCATTTATCGCGTTCATTCGTATTTCAGAACAGCCCAATG 574
BSNT_01394___ 563 ATGCTTTTTTACAAAAAGCCAATACACCTCAAGA---AAAAACATCAGCA 609
| |||||| |||...|.||.|||| ||||.|
RBAM_031160 575 A-----------AAAAAG-CAACGGAACTGAAGATGTAAAAGC------- 605
BSNT_01394___ 610 CTTGCTTCTATTAAAGAAGGCCTTCAGTATTTGAAA-------CGG-ATG 651
|..|||.||||.|| ||||| ||| |||
RBAM_031160 606 -------CGGTTACAGAATGC----------TGAAAGGAAATGCGGCATG 638
BSNT_01394___ 652 CC--ACTTCT-TTTAATAGGCTTACTCACAGCTTGCGTCGT---TCTCTT 695
.| ||.||| |...||| ||| ||.|||||| ||||
RBAM_031160 639 GCTGACATCTGTCGGATA--CTT---------TTTCGTCGTAAATCTC-- 675
BSNT_01394___ 696 TGTTTTGCAGATTGGTGATTCCCAGGC--TATCATTC--TTAT----CCG 737
||.|||.|| ||| ||| ||| |.|| |||
RBAM_031160 676 --------------GTCATTGCC-GGCCTTAT--TTCAGTAATGGGGCCG 708
BSNT_01394___ 738 -TTCT------------TTTTCAGGCGCTCCGCCTGAGCT-TGCAGGCTG 773
|||| ||||||| |.||.|| |.|.|..||
RBAM_031160 709 ATTCTTGCTGTGGAGCGTTTTCAG---------CAGAACTATTCTGTATG 749
BSNT_01394___ 774 GTGCATGGCCGTCA-----------------GCGGAGCCGGCATGCTCCT 806
|| |.||||||| ||| ||.|||||..|
RBAM_031160 750 GT---TTGCCGTCATGTATTCAATGTTTCAGGCG-----GGGATGCTTTT 791
BSNT_01394___ 807 TACGGCGGCAATTGCCGGCAGACGGCGAATCACCTCTTATTTTCTTTATT 856
.|||||| |.|||.| ||||
RBAM_031160 792 -----GGGCAAT--CTGGCCG-------------------------TATT 809
BSNT_01394___ 857 TCTCAGCTGGGACCTTTC----TGCTTGGACTAGCAACTGGA--GGCGTG 900
|.|||..|||.| |.| .|||||.|| |..|||.| .||| |
RBAM_031160 810 TTTCAAATGGAA---TACAAAACGCTTGAAC---CGGCTGTACCCGCG-G 852
BSNT_01394___ 901 CCATTTCTGAGCGGAATGGGAATTGCCGGCAT--TGCTCTTTTTATTTTC 948
.|.|| |.|||.|..||.|.||| .||| |||||.|.|| |||||
RBAM_031160 853 ACGTT----AACGGCAGCGGGACTGC--TCATTATGCTCCTGTT-TTTTC 895
BSNT_01394___ 949 GCTTT------TTT-----CATCATGGGAGCGGCTT--------TTGG-- 977
.|.|| ||| |||||| ||| ||||
RBAM_031160 896 CCCTTCATGGGTTTGAGTGCATCAT--------CTTCCTGGTACTTGGCA 937
BSNT_01394___ 978 ------TCTGGTCCATATTCCAT-TTCAAA-----------TTCTCGTGC 1009
|||.|| ||||| .|| |.|||| ||| |
RBAM_031160 938 TCATCATCTCGT--ATATT-GATGTGCAAACGGTGCTGTATTTC-----C 979
BSNT_01394___ 1010 AAACAACAGTGCCGGTTGATTACAGCGGCAGGGTGTTTGGCGCCA----- 1054
|||..||.||.||||..|..||...|||.|||||.|||| ||
RBAM_031160 980 AAAAGACGGTTCCGGCCGCATATTTCGGAAGGGTCTTTG----CACTGAT 1025
BSNT_01394___ 1055 --TTCAGAGCGCGACAACCCTCGCCTCCATCCTCGGCATGGCGGGCG-GA 1101
|| |||||..||...|||| | ||
RBAM_031160 1026 TTTT---------------------TCCATTGTCAAAATGG-----GTGA 1049
BSNT_01394___ 1102 GGCATGCTGGCGGAATGGATCGGTGT-TTCAC-TTGCTTTTCTTGTCTGT 1149
..| ||||.||| .||.||| |.||| ..||||
RBAM_031160 1050 ACC--GCTGTCGG------CCGCTGTCTACACAGGGCTT----------- 1080
BSNT_01394___ 1150 GGCTGCTTGCTGATCTTGATTGGGTTGATTACACTT--------GTAGG- 1190
|||| ||.||| |||.||.| |||||.|.|| ||.||
RBAM_031160 1081 --CTGC-TGTTGA---TGAATGCG--GATTATATTTTTGCGGCGGTCGGA 1122
BSNT_01394___ 1191 --------TAAGAAAG------------TTTCAGAAAG-CAGGCGATATC 1219
||.||..| ||||||..|| ||.|.||
RBAM_031160 1123 CTGACCCTTACGATCGTTTTTGCTATTTTTTCAGTCAGACAAGGGA---- 1168
BSNT_01394___ 1220 TTGTCACCAAAAGTA--ACAAAGGAGCACAA--GGATAA---------- 1254
||| ||||.| |||.||.| |||| ||||.|
RBAM_031160 1169 --GTC----AAAGAAATACAGAGAA--ACAAGCGGATCAATCCGTCTGA 1209
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