Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05118 and RBAM_031110

See Amino acid alignment / Visit BSNT_05118 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:36
# Commandline: needle
#    -asequence dna-align/BSNT_05118___yvbF.1.9828.seq
#    -bsequence dna-align/RBAM_031110___yvbF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05118___yvbF-RBAM_031110___yvbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05118___yvbF-RBAM_031110___yvbF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05118___yvbF
# 2: RBAM_031110___yvbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 558
# Identity:     443/558 (79.4%)
# Similarity:   443/558 (79.4%)
# Gaps:           0/558 ( 0.0%)
# Score: 1755.0
# 
#
#=======================================

BSNT_05118___      1 GTGAAAAAAACCGCTCTCGACATCATTGAACATGCTGAAGAGCATCTCAT     50
                     |||.||||||.||||||.||.|||||.|..||||||||||||||||||||
RBAM_031110__      1 GTGGAAAAAAACGCTCTTGATATCATCGGGCATGCTGAAGAGCATCTCAT     50

BSNT_05118___     51 TGAGAAGATTGCCGAAAATATGCATACGTTTGGAATGCCTTCAACTGTCG    100
                     |||||..||.|||||.|||||||||||.||.||||||||..|.||..|.|
RBAM_031110__     51 TGAGAGAATCGCCGAGAATATGCATACATTCGGAATGCCGGCCACACTTG    100

BSNT_05118___    101 GACGTGTGCTCGGAATTATTTATATGAATCGAAAACCGATGACCTTAAGC    150
                     |||||||||||||.||||||||||||||.||.||.||||||||.||||..
RBAM_031110__    101 GACGTGTGCTCGGTATTATTTATATGAACCGCAAGCCGATGACGTTAAAT    150

BSNT_05118___    151 GAGCTCTCTGAGGCAACGGGCATGAGCAAAACACGGATGAGCCAGGTTGT    200
                     |||||.||.|||||.||.||.|||||||||||..|||||||||||||.||
RBAM_031110__    151 GAGCTGTCAGAGGCGACCGGGATGAGCAAAACGAGGATGAGCCAGGTGGT    200

BSNT_05118___    201 CCGGGAAATGATCGATGCCAATATCGCCGAAAAGGTGTTTGAAAAAGGCG    250
                     |||.|||||||.|||||.||||.|.||.|||||.||||||||||||||||
RBAM_031110__    201 CCGCGAAATGACCGATGTCAATCTGGCTGAAAAAGTGTTTGAAAAAGGCG    250

BSNT_05118___    251 TACGAAAAGACCTTTATGACGTCGAGCAGGATTATTATCAAACCTTCATT    300
                     |.||.|||||||||||||||||.||.|..||||||||.||.||.||.||.
RBAM_031110__    251 TTCGGAAAGACCTTTATGACGTGGAACGTGATTATTACCAGACGTTTATC    300

BSNT_05118___    301 TCTTTATTTGCGGCGAATTGGACAAAGGTCGTGAGCAAAAACAAAGTGCT    350
                     ||..|.|||.||||.|||||||||||||..||.||||||||||||.||||
RBAM_031110__    301 TCCCTGTTTACGGCAAATTGGACAAAGGCGGTCAGCAAAAACAAAATGCT    350

BSNT_05118___    351 GTATAAAAAATTAAACCGGGAACTGAGTGATCTTTTACAAAGGGACGGGC    400
                     .|||||||||.|.|||||.||.||||.|||.|||.|..||..|||....|
RBAM_031110__    351 CTATAAAAAACTGAACCGCGAGCTGACTGAGCTTCTGGAATCGGAAAATC    400

BSNT_05118___    401 TTACCCCGGAAGCGGAAGAGAAAGTCAATCAGCTGCTGAATGAATTAAAA    450
                     |.|..||.||....|||||.||||.|..||||||..||.|||||.|.|..
RBAM_031110__    401 TCAGTCCCGATATTGAAGAAAAAGCCCGTCAGCTTTTGGATGAACTGACG    450

BSNT_05118___    451 GAATGGCTTCATTACTATGATTGGCTGAGCAGGTTGATTGAATTTTTTGA    500
                     ||.|||||||||||.|||||.|||||||||.|.|||||.|||||||||||
RBAM_031110__    451 GATTGGCTTCATTATTATGACTGGCTGAGCCGTTTGATAGAATTTTTTGA    500

BSNT_05118___    501 GAGTGAGGAAGTCTTTCGGTACGTGCCAAAAACAAAAGAAAGCAGCTCTC    550
                     ||||||.|||||.||||.|.|.|||||.||||.|.||.||||||||.|.|
RBAM_031110__    501 GAGTGAAGAAGTGTTTCAGCATGTGCCGAAAATAGAAAAAAGCAGCACCC    550

BSNT_05118___    551 TAAAATAA    558
                     .||.||||
RBAM_031110__    551 GAAGATAA    558


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.