Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05115 and RBAM_031080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:35
# Commandline: needle
# -asequence dna-align/BSNT_05115___opuCC.1.9828.seq
# -bsequence dna-align/RBAM_031080___opuCC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05115___opuCC-RBAM_031080___opuCC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05115___opuCC-RBAM_031080___opuCC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05115___opuCC
# 2: RBAM_031080___opuCC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 935
# Identity: 744/935 (79.6%)
# Similarity: 744/935 (79.6%)
# Gaps: 34/935 ( 3.6%)
# Score: 2970.5
#
#
#=======================================
BSNT_05115___ 1 TTGAAAATGA---CAAAAATCAAATGGCT--------TGGCGC-GTTTGC 38
||||||| || ||||| .|.||||.| |||||| ||..||
RBAM_031080__ 1 TTGAAAA-GAAACCAAAA--GAGATGGATGTGCGTACTGGCGCTGTCAGC 47
BSNT_05115___ 39 T-CTCGTCTTTGTCATGCTGCTAGGCGGCTGCTCTCTGCCGGGTCTCGGC 87
| ||| ||||.|||||||||||.||.||.||.||.||..||
RBAM_031080__ 48 TGCTC----------TGCTTCTAGGCGGCTGTTCCCTTCCCGGCCTGAGC 87
BSNT_05115___ 88 GGCGCTTCTGACGACACGATCAAAATCGGGGCGCAAAGCATGACAGAATC 137
||.|||||.||.||.|||||||||||||||||||||||||||||.|||||
RBAM_031080__ 88 GGGGCTTCCGATGATACGATCAAAATCGGGGCGCAAAGCATGACGGAATC 137
BSNT_05115___ 138 AGAAATTTTAGCGAATATGATCGCGCAGCTTATTGAACATGATACAGATT 187
|||||||.|.||.|||||||||||.|||.|.|||||.||..|||||||.|
RBAM_031080__ 138 AGAAATTATCGCCAATATGATCGCACAGATGATTGAGCACAATACAGACT 187
BSNT_05115___ 188 TGAATACCGCTTTAGTGAAAAACCTCGGCTCAAACTATGTTCAGCACCAA 237
|||||||.||.|||.|.|||||||||||.||.||||||||.|||||.||.
RBAM_031080__ 188 TGAATACGGCATTAATTAAAAACCTCGGATCGAACTATGTCCAGCAGCAG 237
BSNT_05115___ 238 GCGATGCTGGGCGGTGACATTGATATTTCAGCCACGCGCTATTCCGGAAC 287
||||||||.||||||||.||.|||||..|.||.||||||||.||.|||||
RBAM_031080__ 238 GCGATGCTCGGCGGTGAAATCGATATCGCCGCGACGCGCTACTCGGGAAC 287
BSNT_05115___ 288 AGATTTAACAAGCACCCTCGGCAAGGAAGCGGAGAAAGATCCGAAAAAAG 337
.||||||||.|||||||||||||.|||||||||.|||||.||||||||||
RBAM_031080__ 288 GGATTTAACGAGCACCCTCGGCATGGAAGCGGAAAAAGACCCGAAAAAAG 337
BSNT_05115___ 338 CGCTGAACATTGTGCAGAACGAGTTTCAAAAGCGCTTTTCTTATAAATGG 387
|..|...|||.||.|||||.||.|||.|.||.|||||...|||.||||||
RBAM_031080__ 338 CATTATCCATCGTCCAGAAGGAATTTGAGAAACGCTTCCATTACAAATGG 387
BSNT_05115___ 388 TTTGATTCCTACGGCTTTGATAACACGTATGCCTTCACCGTAACAAAAAA 437
||||||||.|||||.|||||.|||||.||.||.||.|||||.||.|||.|
RBAM_031080__ 388 TTTGATTCTTACGGATTTGAGAACACATACGCTTTTACCGTCACGAAAGA 437
BSNT_05115___ 438 GTTTGCGGAAAATGAGCATATTA-ACACCGTGTCCGACCTGAAAAAAAAT 486
..||||||||||.||.||| ||| |||..||||||||..|.||.||..||
RBAM_031080__ 438 ACTTGCGGAAAAAGACCAT-TTAGACAAAGTGTCCGATATTAAGAAGCAT 486
BSNT_05115___ 487 GCCTCCCAATATAAATTAGGCGTCGACAATGCCTGGCTGAAACGGAAAGG 536
||....||||.|||..|.||.||.||||||||.|||||||||.|.|||||
RBAM_031080__ 487 GCGGATCAATTTAAGCTCGGTGTAGACAATGCGTGGCTGAAAAGAAAAGG 536
BSNT_05115___ 537 CGACGGATATAAAGGCTTTGTCAGCACATATGGCTTTGAATTCGGCACAA 586
||||||.||||||||||||..|..|||.||.|||||||||||||||||||
RBAM_031080__ 537 CGACGGCTATAAAGGCTTTACCGACACGTACGGCTTTGAATTCGGCACAA 586
BSNT_05115___ 587 CTTATCCGATGCAGATCGGGCTTGTCTATGACGCAGTCAAAAACGGGAAA 636
|.|||||||||||||||||.|||||.||.||.||.||.||||||||||||
RBAM_031080__ 587 CCTATCCGATGCAGATCGGACTTGTATACGATGCCGTGAAAAACGGGAAA 636
BSNT_05115___ 637 ATGGACGCCGTTTTGGCTTATTCAACGGATGGACGGATTAAAGCATACGA 686
|||||.|||||..|.||.|||||||||||.||||||||||||||.|||||
RBAM_031080__ 637 ATGGATGCCGTCCTCGCCTATTCAACGGACGGACGGATTAAAGCGTACGA 686
BSNT_05115___ 687 TCTGAAAATCTTAAAAGACGATAAGCGTTTCTTCCCGCCGTATGACTGTT 736
|||||||||.|||||||||||.|||||.||.|||||||||||||||||||
RBAM_031080__ 687 TCTGAAAATTTTAAAAGACGACAAGCGGTTTTTCCCGCCGTATGACTGTT 736
BSNT_05115___ 737 CACCGGTGATTCCGGAAAAGGTGCTTAAGGAGCATCCGGAGCTTGAGGG- 785
|.|||||.|||||.||.|..|||||.|||.|||||||.||.||..||||
RBAM_031080__ 737 CGCCGGTCATTCCCGACAGCGTGCTGAAGCAGCATCCTGAACTGAAGGGC 786
BSNT_05115___ 786 --TGTGATCAATAAGCTGATTGGGCAAATCGACACGGAAACGATGCAGGA 833
|||| |||||.|||||.||..|||||||.|||||||||||||||||
RBAM_031080__ 787 ATTGTG---AATAAACTGATCGGCAAAATCGATACGGAAACGATGCAGGA 833
BSNT_05115___ 834 ACTTAATTATGAAGTGGATGGCAAGCTGAAGGAGCCGTCTGTCGTAGCAA 883
|.|.|||||.||.|||||.|||||||||||.||.|||||.|||||.||.|
RBAM_031080__ 834 ATTGAATTACGAGGTGGACGGCAAGCTGAAAGAACCGTCCGTCGTCGCTA 883
BSNT_05115___ 884 AGGAATTTTTAGAGAAACATCATTATTTTGACTAA 918
|.||||||||.||||||||||||||||||||.|||
RBAM_031080__ 884 AAGAATTTTTGGAGAAACATCATTATTTTGAATAA 918
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